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PubMed · 15067685

Diffusion-collision model algorithms for protein folding kinetics.

Zlatko Vasilkoski·David L Weaver
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Abstract

The diffusion-collision model (DCM) of protein folding is described qualitatively and quantitatively. The input parameters required to perform a calculation are explained, and the output data are outlined. Three examples are given of calculating DCM folding kinetics: the Engrailed Homeodomain (a three-helix bundle with three helical microdomains, pdb code 1ENH), protein G (with three microdomains having a beta-hairpin-alpha-helix-beta-hairpin motif, pdb code 1PGA), and apomyoglobin (with eight helices and seven strong microdomain-microdomain pairings).

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AlgorithmsApoproteinsComputer SimulationDiffusionImmunoglobulin GKineticsModels, TheoreticalMyoglobinProtein FoldingJournal Article

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BibTeXRIS

Zlatko Vasilkoski, David L Weaver. 2004. Diffusion-collision model algorithms for protein folding kinetics.. https://doi.org/10.1002/jcc.20032

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