Regulatory sequence analysis tools.

Jacques van Helden

doi:10.1093/nar/gkg567

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PubMed · 12824373

Regulatory sequence analysis tools.

Jacques van Helden

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Abstract

The web resource Regulatory Sequence Analysis Tools (RSAT) (http://rsat.ulb.ac.be/rsat) offers a collection of software tools dedicated to the prediction of regulatory sites in non-coding DNA sequences. These tools include sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Alternative formats are supported for the representation of regulatory motifs (strings or position-specific scoring matrices) and several algorithms are proposed for pattern discovery. RSAT currently holds >100 fully sequenced genomes and these data are regularly updated from GenBank.

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5' Flanking Region Algorithms Binding Sites Computer Graphics Genome Internet Regulatory Sequences, Nucleic Acid Sequence Analysis, DNA Software Transcription Factors User-Computer Interface Journal Article Research Support, Non-U.S. Gov't

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Jacques van Helden. 2003-07-01. Regulatory sequence analysis tools.. https://doi.org/10.1093/nar%2Fgkg567

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