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PubMed · 11590107

BioLayout--an automatic graph layout algorithm for similarity visualization.

A J Enright·C A Ouzounis
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Abstract

UNLABELLED: Graph layout is extensively used in the field of mathematics and computer science, however these ideas and methods have not been extended in a general fashion to the construction of graphs for biological data. To this end, we have implemented a version of the Fruchterman Rheingold graph layout algorithm, extensively modified for the purpose of similarity analysis in biology. This algorithm rapidly and effectively generates clear two (2D) or three-dimensional (3D) graphs representing similarity relationships such as protein sequence similarity. The implementation of the algorithm is general and applicable to most types of similarity information for biological data. AVAILABILITY: BioLayout is available for most UNIX platforms at the following web-site: http://www.ebi.ac.uk/research/cgg/services/layout.

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AlgorithmsAmino Acid SequenceComputer GraphicsDatabases, ProteinImage Processing, Computer-AssistedImaging, Three-DimensionalSoftwareJournal Article

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BibTeXRIS

A J Enright, C A Ouzounis. 2001. BioLayout--an automatic graph layout algorithm for similarity visualization.. https://doi.org/10.1093/bioinformatics%2F17.9.853

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