Biomedical subjects

Zhenli Zhang

Publications and source records attributed to Zhenli Zhang.

8 recordsLinked to original sources

PubMed2007

A precise packing sequence for self-assembled convex structures.

Molecular simulations of the self-assembly of cone-shaped particles with specific, attractive interactions are performed. Upon cooling from random initial conditions, we find that the cones self-assemble into clusters and that clusters comprised of particular numbers of cones (e.g., 4-17, 20, 27, 32, and 42) have a unique and precisely packed structure that is robust over a range of cone angles. These precise clusters form a sequence of structures at specific cluster sizes (a "precise packing sequence") that for small sizes is identical to that observed in evaporation-driven assembly of colloidal spheres. We further show that this sequence is reproduced and extended in simulations of two simple models of spheres self-assembling from random initial conditions subject to convexity constraints, including an initial spherical convexity constraint for moderate- and large-sized clusters. This sequence contains six of the most common virus capsid structures obtained in vivo, including large chiral clusters and a cluster that may correspond to several non-icosahedral, spherical virus capsids obtained in vivo. Our findings suggest that this precise packing sequence results from free energy minimization subject to convexity constraints and is applicable to a broad range of assembly processes.

Capsid↗

PubMed2006

Simulation studies of self-assembly of end-tethered nanorods in solution and role of rod aspect ratio and tether length.

We present temperature versus concentration phase diagrams for "shape amphiphiles" comprised of tethered moderate and low aspect ratio rods. Simulations of moderate aspect ratio rods (first reported by Horsch et al. [Phys. Rev. Lett. 95, 056105 (2005)]) predict their self-assembly into spherical micelles with bcc order, long micelles with nematic order, a racemic mixture of hexagonally ordered chiral cylinders, two perforated phases: one with tetragonal order and one with hexagonal order, and a smectic C lamellar phase. In contrast, we predict here that small aspect ratio tethered rods self-assemble into bcc ordered spherical micelles, hexagonally ordered cylinders, and a smectic C lamellar phase. We compare and contrast the phases obtained for the two aspect ratios and examine in further detail several unusual phases. Our simulations also reveal that for moderate aspect ratio rods there is a tendency toward phases with decreasing interfacial curvature with decreasing coil size, including a double gyroid phase. In addition, we investigate the role of tether length on the assembled structures. Our results are applicable to short rod-coil block copolymers and rodlike nanoparticles with polymer tethers, and to colloidal building blocks comprised of a flexible string of colloids tethered to a rigid string of colloids, with the interactions scaled appropriately.

Journal Article↗

PubMed2006

Self-assembly of CdTe nanocrystals into free-floating sheets.

In their physical dimensions, surface chemistry, and degree of anisotropic interactions in solution, CdTe nanoparticles are similar to proteins. We experimentally observed their spontaneous, template-free organization into free-floating particulate sheets, which resemble the assembly of surface layer (S-layer) proteins. Computer simulation and concurrent experiments demonstrated that the dipole moment, small positive charge, and directional hydrophobic attraction are the driving forces for the self-organization process. The data presented here highlight the analogy of the solution behavior of the two vastly different classes of chemical structures.

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PubMed2006

Self-assembly of laterally-tethered nanorods.

We report results from a computational study of laterally tethered nanorod "shape amphiphiles". Our simulations predict that the model nanorods self-assemble into stepped-ribbon-like micelles, a centered rectangular stepped-ribbon phase, and two structurally different liquid crystalline bilayer phases: one in which the bilayers have C(mm) symmetry and another in which they have P(2) symmetry. We provide a possible explanation for the transition between the two C(mm) and P(2) liquid crystalline phases.

Computer Simulation↗

PubMed2005

Self-assembly of patchy particles into diamond structures through molecular mimicry.

Fabrication of diamond structures by self-assembly is a fundamental challenge in making three-dimensional photonic crystals. We simulate a system of model hard particles with attractive patches and show that they can self-assemble into a diamond structure from an initially disordered state. We quantify the extent to which the formation of the diamond structure can be facilitated by "seeding" the system with small diamond crystallites or by introducing a rotation interaction to mimic a carbon-carbon antibonding interaction. Our results suggest patchy particles may serve as colloidal "atoms" and "molecules" for the bottom-up self-assembly of three-dimensional crystals.

Journal Article↗

PubMed2005

Phase diagrams of self-assembled mono-tethered nanospheres from molecular simulation and comparison to surfactants.

We perform Brownian dynamics simulations on model 3-D systems of mono-tethered nanospheres (TNS) to study the equilibrium morphologies formed by their self-assembly in a selective solvent. We predict that in contrast to flexible amphiphiles the nanospheres are locally ordered and there is an increase in the local order with an increase in concentration or relative nanoparticle diameter. We present the temperature vs concentration phase diagram for a system of TNS and propose a dimensionless scaling factor F(v) (headgroup volume/tether volume) that allows a comparison between the morphologies formed from TNS and traditional surfactants.

Journal Article↗

PubMed2005

Self-assembly of polymer-tethered nanorods.

We present results of molecular simulations that predict the phases formed by self-assembly of nanorods functionalized by a polymer "tether." Microphase separation of the immiscible tethers and rods coupled with the liquid crystal ordering of the rods induces the formation of a cubic phase, a smectic C phase, a tetragonally perforated lamellar phase, and a honeycomb phase; the latter two have been observed experimentally but have not been predicted. We also predict a new phase--a racemic mixture of hexagonally ordered chiral cylinders that self-assemble from these achiral building blocks.

Journal Article↗

PubMed2004

Hydrodynamics and microphase ordering in block copolymers: are hydrodynamics required for ordered phases with periodicity in more than one dimension?

We use Brownian dynamics (BD), molecular dynamics, and dissipative particle dynamics to study the phase behavior of diblock copolymer melts and to determine if hydrodynamics is required in the formation of phases with greater than one-dimensional periodicity. We present a phase diagram for diblock copolymers predicted by BD and provide a relationship between the inverse dimensionless temperature epsilon/k(B)T and the Flory-Huggins chi parameter, allowing for a quantitative comparison between methods and to mean field predictions. Our results concerning phase behavior are in good qualitative agreement with the theoretical predictions of Matsen and Bates [M. W. Matsen and F. S. Bates, Macromolecules 29, 1091 (1996)]; however, fluctuation effects arising from finite polymer lengths substantially alter the phase boundaries. Our results pertaining to the hydrodynamics are in contrast to earlier work by Groot et al. [R. D. Groot, T. J. Madden, and D. J. Tildesley, J. Chem. Phys. 110, 9739 (1999); D. Frenkel and B. Smit, Understanding Molecular Simulation, 2nd ed. (Academic, New York, 2001)]. In particular, we obtain the hexagonal ordered cylinder phase with BD, a method that does not include hydrodynamics.

Journal Article↗