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Biomedical subjects

Z W Luo

Publications and source records attributed to Z W Luo.

25 records · Page 2Linked to original sources

A mathematical model of adaptive behavior in quadruped locomotion.

Locomotion involves repetitive movements and is often executed unconsciously and automatically. In order to achieve smooth locomotion, the coordination of the rhythms of all physical parts is important. Neurophysiological studies have related that basic rhythms are produced in the spinal network called, the central pattern generator (CPG), where some neural oscillators interact to self-organize coordinated rhythms. We present a model of the adaptation of locomotion patterns to a variable environment, and attempt to elucidate how the dynamics of locomotion pattern generation are adjusted by the environmental changes. Recent experimental results indicate that decerebrate cats have the ability to learn new gait patterns in a changed environment. In those experiments, a decerebrate cat was set on a treadmill consisting of three moving belts. This treadmill provides a periodic perturbation to each limb through variation of the speed of each belt. When the belt for the left forelimb is quickened, the decerebrate cat initially loses interlimb coordination and stability, but gradually recovers them and finally walks with a new gait. Based on the above biological facts, we propose a CPG model whose rhythmic pattern adapts to periodic perturbation from the variable environment. First, we design the oscillator interactions to generate a desired rhythmic pattern. In our model, oscillator interactions are regarded as the forces that generate the desired motion pattern. If the desired pattern has already been realized, then the interactions are equal to zero. However, this rhythmic pattern is not reproducible when there is an environmental change. Also, if we do not adjust the rhythmic dynamics, the oscillator interactions will not be zero. Therefore, in our adaptation rule, we adjust the memorized rhythmic pattern so as to minimize the oscillator interactions. This rule can describe the adaptive behavior of decerebrate cats well. Finally, we propose a mathematical framework of an adaptation in rhythmic motion. Our framework consists of three types of dynamics: environmental, rhythmic motion, and adaptation dynamics. We conclude that the time scale of adaptation dynamics should be much larger than that of rhythmic motion dynamics, and the repetition of rhythmic motions in a stable environment is important for the convergence of adaptation.

Adaptation, Physiological↗

Detecting linkage disequilibrium between a polymorphic marker locus and a trait locus in natural populations.

A novel statistical model was developed to test for linkage disequilibrium between a polymorphic genetic marker locus and a locus underlying a quantitative trait (QTL) in natural populations using principles of analysis of variance of unbalanced data and analysis of regression involving data of non-normal distribution. Powers of these statistical tests are formulated as functions of census population size, allelic frequencies at the marker locus and the trait locus, additive and dominance effects at the QTL as well as the coefficient of linkage disequilibrium. Theoretical predictions of the power are validated by extensive Monte Carlo simulations. Among all these factors examined, the amount of the disequilibrium and the size of effect of the QTL are of most importance in determining the power, and the dominance and the allele frequencies at the two loci have substantial effects on the power. Numerical analyses based upon the theoretical calculations and simulation studies favour use of regression of the number of marker alleles on the trait phenotypes as a measure of detection of linkage disequilibrium. Theoretical analysis is also performed to investigate robustness of the formula for predicting the variance of the regression coefficient, which requires normality of the regression variables, whereas normality may not be strictly warranted.

Alleles↗

A population genetics model of marker-assisted selection.

A deterministic two-loci model was developed to predict genetic response to marker-assisted selection (MAS) in one generation and in multiple generations. Formulas were derived to relate linkage disequilibrium in a population to the proportion of additive genetic variance used by MAS, and in turn to an extra improvement in genetic response over phenotypic selection. Predictions of the response were compared to those predicted by using an infinite-loci model and the factors affecting efficiency of MAS were examined. Theoretical analyses of the present study revealed the nonlinearity between the selection intensity and genetic response in MAS. In addition to the heritability of the trait and the proportion of the marker-associated genetic variance, the frequencies of the selectively favorable alleles at the two loci, one marker and one quantitative trait locus, were found to play an important role in determining both the short- and long-term efficiencies of MAS. The evolution of linkage disequilibrium and thus the genetic response over several generations were predicted theoretically and examined by simulation. MAS dissipated the disequilibrium more quickly than drift alone. In some cases studied, the rate of dissipation was as large as that to be expected in the circumstance where the true recombination fraction was increased by three times and selection was absent.

Computer Simulation↗

Maximum likelihood estimation of linkage between a marker gene and a quantitative trait locus. II. Application to backcross and doubled haploid populations.

The algorithm for estimating both the recombination fraction between a marker gene and a locus affecting a quantitative trait, and also the means and variances of the QTL genotypes, is extended to backcross and doubled haploid populations. The simulation experiments show that estimates of these parameters can be obtained with acceptable accuracy and results are compared with those obtained using F2 populations studied previously (Luo & Kearsey, 1989).

Algorithms↗

Maximum likelihood estimation of linkage between a marker gene and a quantitative locus.

A maximum likelihood approach is developed for estimating the recombination fraction in a segregating population (F2), between a marker gene and a locus affecting a quantitative trait as well as estimating the means and variances of the three genotypes of the quantitative trait. The experimental results from computer simulations show that even with experimental sizes of 500, estimates of the parameters can be obtained by aid of the codominant marker gene as long as the heritability of the quantitative trait in question is not less than 0.10. However at low heritabilities the variances of estimates are very large.

Computer Simulation↗

TetraploidMap: construction of a linkage map in autotetraploid species.

TetraploidMap is a suite of Fortran 90 routines run from Microsoft Windows with a text-based input and output. TetraploidMap enables the user to assemble a linkage map from dominant and codominant (multiallelic) marker loci scored for the parents and full-sib progeny of a cross in an autotetraploid species. It includes routines for the inference of the parental genotypes, identification of linkage groups, two-point analysis to estimate the recombination frequency and LOD score between all pairs of marker in a linkage group, and locus ordering by simulated annealing.

Algorithms↗