Biomedical subjects

Y Liu

Publications and source records attributed to Y Liu.

At least 127 records · Page 7Linked to original sources

PubMed2005

Carbohydrate-binding specificities of mouse ficolin A, a splicing variant of ficolin A and ficolin B and their complex formation with MASP-2 and sMAP.

Ficolins are a group of proteins mainly consisting of collagen-like and fibrinogen-like domains and are thought to play a role in innate immunity via their carbohydrate-binding activities. Two types of ficolins have been identified in mice, ficolin A, and ficolin B. However, their structure and function are not fully understood. In this study, we isolated the cDNA encoding a novel variant of ficolin A having a shorter collagen-like domain and a longer gap sequence, which was generated from the ficolin A gene by alternative splicing. We delineated the structure and function of mouse ficolins, including this splicing variant, by preparing the respective recombinants. Recombinant ficolin A, its splicing variant, and ficolin B showed multimeric structures and revealed binding to both N-acetylglucosamine and N-acetylgalactosamine. Interestingly, ficolin B specifically recognized sialic acid residues. Ficolin A and its variant, but not ficolin B, bound to mannose-binding lectin (MBL)-associated serine protease-2 (Masp-2) and small MBL-associated protein (smap), and the resulting complexes showed a potent complement activating capacity. In addition, smap competed with Masp-2 in association with ficolin A and its variant, and inhibited the complement activation by the ficolin A (or ficolin A variant)/MASP-2 complex, indicating its regulatory role in the lectin pathway. These results suggest that ficolin A and its variant function as recognition molecules of the lectin pathway, and ficolin B plays a distinct role through its unique carbohydrate-binding specificity.

Adaptor Proteins, Signal Transducing↗

PubMed2005

Dynamic chirality in donor-acceptor pretzelanes.

[Figure: see text]. A series of donor-acceptor pretzelanes has been synthesized, using self-assembly and template-directed protocols, and the dynamic processes that these pretzelanes undergo have been investigated in solution. These compounds exist as libraries of diastereoisomers as a result of their multiple stereoelements, which are dynamically interconverted by several different, in some cases competing, processes. Altering the structure of the pretzelanes changes the rates and mechanisms by which these diastereoisomers equilibrate. Additionally, inserting an element of fixed chirality allows the equilibrium to be biased, while maintaining the barrier to the equilibration processes. These results bode well for the future construction of molecular devices based on switchable diastereoisomerism involving metastable states.

Journal Article↗

PubMed2005

Gene cloning and functional analysis of glycosaminoglycan-degrading enzyme chondroitin AC lyase from Flavobacterium columnare G4.

The chondroitin AC lyase gene, cslA, was cloned for the first time from the fish bacterial pathogen F. columnare G4. From the first transcription initiation site, the cslA extends 2620 nucleotides to the end of the 3' region. The open reading frame of cslA transcript has 2286 nucleotides encoding 762 amino acids with a 16 residues long signal peptide at the N-terminus. The gene, cslA was then successfully expressed in Escherichia coli and recombinant chondroitin AC lyase, rChonAC was purified, with its lytic activity analyzed. Zymography analysis copolymerized with chondroitin sulphate revealed the lytic activity of rChonAC and also the crude native ChonAC isolated from periplamic space of cultured F. columnare G4. The low level of lytic activity observed in crude native ChonAC may be due possibly to the low level of expression of this gene in the cultured condition. The expression and the role of this virulence factor is of interest for further research on the pathogenesis of F. columnare.

Amino Acid Sequence↗

PubMed2005

Possible observation of phase separation near a quantum phase transition in doubly connected ultrathin superconducting cylinders of aluminum.

The kinetic energy of superconducting electrons in an ultrathin, doubly connected superconducting cylinder, determined by the applied flux, increases as the cylinder diameter decreases, leading to a destructive regime around half-flux quanta and a superconductor to normal metal quantum phase transition (QPT). Regular steplike features in resistance versus temperature curves taken at fixed flux values were observed near the QPT in ultrathin Al cylinders. It is proposed that these features are most likely resulting from a phase separation near the QPT in which normal regions nucleate in a homogeneous superconducting cylinder.

Journal Article↗

PubMed2005

Oxidant denuder sampling for analysis of polycyclic aromatic hydrocarbons and their oxygenated derivates in ambient aerosol: evaluation of sampling artefact.

The concentrations of some polycyclic aromatic hydrocarbons (PAH) and oxygenated PAH (O-PAH) can be changed by oxidation reactions during sampling. This can lead to an over- or underestimation of the corresponding adverse health effects. The aim of this study was the evaluation of these sampling artefacts. The potential of using an oxidant denuder was shown by parallel low-volume sampling with and without MnO(2) ozone denuder. Twenty-three PAH and 11 O-PAH in ambient air were analysed, both in the vapour and particulate phase. The denuder was proven to be highly efficient for stripping ozone from air while causing no significant particle losses. In general, the concentrations of 5- to 7-ring PAH, which are predominantly associated with particles, were underestimated in non-denuded samples. The highest losses due to reaction with ozone and other atmospheric oxidants were observed for benzo[a]pyrene and perylene. Concurrently, the concentrations of most of the mainly particle-associated 4- to 5-ring O-PAH were higher in the non-denuded samples. The denuder did not only remove ozone, moreover other gaseous species such as more volatile PAH and O-PAH were partially oxidized on the catalytic surface, too. Degradation of PAH and concurrent degradation/formation reactions of O-PAH occurred. The corresponding reactivities of selected PAH and O-PAH are discussed.

Air Pollutants↗

PubMed2005

Observation of vortex coalescence in the anisotropic spin-triplet superconductor Sr2RuO4.

We present direct imaging of magnetic flux structures over the ab face of the anisotropic, spin-triplet superconductor Sr2RuO4 using a scanning microSQUID force microscope. Individual vortices with a single flux quantum were observed at low magnetic fields applied along the out-of-pane direction. At intermediate fields, the direct imaging revealed coalescing of vortices and the formation of flux domains. Our observations imply the existence of a mechanism in this material for bringing vortices together overcoming the conventional repulsive vortex-vortex interaction.

Journal Article↗

PubMed2005

Influence of surface energy of modified surfaces on bacterial adhesion.

There are a number of contrary reports on the effect of surface energy of substrates on bacterial adhesion. Some reports showed that bacterial adhesion decreased with decreasing surface energy of substrates; while other reports showed that bacterial adhesion decreased with increasing surface energy of substrates. In this study Escherichia coli adhesion on the Ni--P--PTFE coatings with various surface energies was investigated and the extended DLVO theory was used to calculate the interaction energy between bacteria and the substrates in water. The theory explained the effect of surface energy of substrates on bacterial adhesion.

Bacterial Adhesion↗

PubMed2005

Lifetime of C2Cl4(-) ions produced by nondissociative electron attachment to C2Cl4.

The lifetimes of long-lived C2Cl4(-) ions formed by Rydberg electron transfer in K(np)/C2Cl4 collisions are investigated using a Penning ion trap. Measurements at high n, n > or = 30, show that low-energy electron attachment to C2Cl4 leads to the production of C2Cl4(-) ions with a broad range of lifetimes that extends up to at least 1 ms. This is attributed to capture by molecules in different initial vibrational states. At low n, internal-to-translational energy transfer in postattachment interactions between the product K+ and C2Cl4(-) ions becomes important and leads to a substantial increase in ion lifetimes.

Journal Article↗

PubMed2005

Probing the barrier for CH2CHCO --> CH2CH + CO by the velocity map imaging method.

This work determines the dissociation barrier height for CH2CHCO --> CH2CH + CO using two-dimensional product velocity map imaging. The CH2CHCO radical is prepared under collision-free conditions from C-Cl bond fission in the photodissociation of acryloyl chloride at 235 nm. The nascent CH2CHCO radicals that do not dissociate to CH2CH + CO, about 73% of all the radicals produced, are detected using 157-nm photoionization. The Cl(2P(3/2)) and Cl(2P(1/2)) atomic fragments, momentum matched to both the stable and unstable radicals, are detected state selectively by resonance-enhanced multiphoton ionization at 235 nm. By comparing the total translational energy release distribution P(E(T)) derived from the measured recoil velocities of the Cl atoms with that derived from the momentum-matched radical cophotofragments which do not dissociate, the energy threshold at which the CH2CHCO radicals begin to dissociate is determined. Based on this energy threshold and conservation of energy, and using calculated C-Cl bond energies for the precursor to produce CH2CHC*O or C*H2CHCO, respectively, we have determined the forward dissociation barriers for the radical to dissociate to vinyl + CO. The experimentally determined barrier for CH2CHC*O --> CH2CH + CO is 21+/-2 kcal mol(-1), and the computed energy difference between the CH2CHC*O and the C*H2CHCO forms of the radical gives the corresponding barrier for C*H2CHCO --> CH2CH + CO to be 23+/-2 kcal mol(-1). This experimental determination is compared with predictions from electronic structure methods, including coupled-cluster, density-functional, and composite Gaussian-3-based methods. The comparison shows that density-functional theory predicts too low an energy for the C*H2CHCO radical, and thus too high a barrier energy, whereas both the Gaussian-3 and the coupled-cluster methods yield predictions in good agreement with experiment. The experiment also shows that acryloyl chloride can be used as a photolytic precursor at 235 nm of thermodynamically stable CH2CHC*O radicals, most with an internal energy distribution ranging from approximately 3 to approximately 21 kcal mol(-1). We discuss the results with respect to the prior work on the O(3P) + propargyl reaction and the analogous O(3P) + allyl system.

Journal Article↗

PubMed2005

Effects of vascular endothelial growth factor (VEGF) and chondroitin sulfate A on human monocytic THP-1 cell migration.

Angiogenesis serves as a crucial factor in disease development and progression, such as cancer metastasis, and monocyte migration is one of the key steps for angiogenesis. Therapeutic modulation of angiogenesis is a promising new therapeutic avenue under investigation. In this study, effects of vascular endothelial growth factor (VEGF) and chondroitin sulfate A on monocyte migration were investigated. Human monocytic THP-1 cells were from Riken Cell Bank (Tsukuba, Japan) and vascular endothelial cells (VECs) were obtained from swine thoracic aorta. The migration experimental system was adapted from Falcontrade mark Cell Culture Inserts with pore sizes of 3 and 8 microm cultured endothelial cells or not on the insert polyethylene terephthalate (PET) membranes. Four VEGF concentrations (0, 10, 50 and 100 ng/ml) and three concentrations of chondroitin sulfate A (0, 1.25 and 5.0 mg/ml) were used to investigate their effects on THP-1 cell migration ability through PET membranes and VECs monolayer. The THP-1 cell migration was evaluated by counting the number of migrated cells related to the total number of cells under a microscope. We counted the migration cells every 1 h on a Tatai-type hemocytometer using an inverted microscope for total 7 h. For inserts with pore sizes of 3 and 8 microm, the THP-1 cell migration increased with VEGF concentrations; however, cell migration decreased with the chondroitin sulfate A concentration. Our results demonstrated that VEGF accelerated monocyte migration through endothelial monolayer and chondroitin sulfate A is an effective inhibitor of monocyte migration for angiogenesis.

Angiogenesis Inhibitors↗

PubMed2005

Ultrasound: mechanical gene transfer into plant cells by sonoporation.

Development of nonviral gene transfer methods would be a valuable alternative of gene therapy or transformation. Ultrasound can produce a variety of nonthermal bioeffects via acoustic cavitation. Cavitation bubbles can induce cell death or transient membrane permeabilization (sonoporation) on cells. Application of sonoporation for gene transfer into cells or tissues develops quickly in recent years. Many studies have been performed in vitro exposure systems to a variety of cell lines transfected successfully. In vivo, cavitation initiation and control are more difficult, but can be enhanced by ultrasound contrast agents (microbubbles). The use of ultrasound for nonviral gene delivery has been applied for mammalian systems, which provides a fundamental basis and strong promise for development of new gene therapy methods for clinical medicine. In this paper, ultrasound applied to plant cell transformation or gene transfer is reviewed. Recently, most researches are focused on sonication-assisted Agrobacterium-mediated transformation (SAAT) in plant cells or tissues. Microbubbles are also proposed to apply to gene transfer in plant cells and tissues.

Gene Transfer Techniques↗

PubMed2005

Rydberg electron transfer to SF6: product ion lifetimes.

The lifetimes of SF6- ions produced by Rydberg electron transfer in K(np)SF6 collisions at high n, n greater or similar to 30, are examined using a Penning ion trap. The data point to the formation of ions with a range of lifetimes that extends from approximately 1 to greater or similar to 10 ms. Sizable numbers of ions remain in the trap even 40 ms after initial injection and at least part of this signal can be attributed to radiative stabilization. Measurements of free low-energy electron attachment to SF6 in the trap show that the product ions have lifetimes similar to those of SF6- ions formed by electron transfer in high-n collisions.

Journal Article↗

PubMed2005

CDX1 is an important molecular mediator of Barrett's metaplasia.

The molecular pathogenesis of Barrett's metaplasia (BM) of the esophagus is poorly understood. The change to an intestinal phenotype occurs on a background of esophagitis due to refluxing acid and bile. CDX1, an important regulator of normal intestinal development, was studied as a potential key molecule in the pathogenesis of BM. CDX1 mRNA and protein were universally expressed in all samples of BM tested but not in normal esophageal squamous or gastric body epithelia. This tissue-specific expression was attributable to the methylation status of the CDX1 promoter. Conjugated bile salts and the inflammatory cytokines TNF-alpha and IL-1beta were all found to increase CDX1 mRNA expression in vitro. These effects were primarily mediated by NF-kappaB signaling but only occurred when the CDX1 promoter was unmethylated or partially methylated. The data suggest that CDX1 is a key molecule linking etiological agents of BM to the development of an intestinal phenotype. Although the initial trigger for CDX1 promoter demethylation is not yet identified, it seems likely that demethylation of its promoter may be the key to the induction and maintenance of CDX1 expression and so of the BM phenotype.

Barrett Esophagus↗

PubMed2005

p53 gene (Gendicine) and embolisation overcame recurrent hepatocellular carcinoma.

Transcatheter arterial chemoembolisation (TACE) has become the standard treatment for unresectable hepatocellular carcinoma (HCC). However, this method is often unsuccessful. The p53 gene, which is present as a mutant form in many human tumours, is known to have broad spectrum antitumour effects when expressed normally. In this study, we report a 23 year old patient with recurrent HCC who was treated with the p53 gene (Gendicine) combining TACE, which resulted in a good clinical prognosis.

Adult↗

PubMed2005

Identification of a large cluster of coiled coil-nucleotide binding site--leucine rich repeat-type genes from the Rps1 region containing Phytophthora resistance genes in soybean.

Fifteen Rps genes confer resistance against the oomycete pathogen Phytophthora sojae, which causes root and stem rot disease in soybean. We have isolated a disease resistance gene-like sequence from the genomic region containing Rps1-k. Four classes of cDNA of the sequence were isolated from etiolated hypocotyl tissues that express the Rps1-k-encoded Phytophthora resistance. Sequence analyses of a cDNA clone showed that the sequence is a member of the coiled coil-nucleotide binding site-leucine rich repeat (CC-NBS-LRR)-type of disease resistance genes. It showed 36% identity to the recently cloned soybean resistance gene Rpg1-b, which confers resistance against Pseudomonas syringae pv. glycinea, and 56% and 38% sequence identity to putative resistance gene sequences from lotus and Medicago truncatula, respectively. The soybean genome contains about 38 copies of the sequence. Most of these copies are clustered in approximately 600 kb of contiguous DNA of the Rps1-k region. We have identified a recombinant that carries both rps1-k- and Rps1-k-haplotype-specific allelomorphs of two Rps1-k-linked molecular markers. An unequal crossover event presumably led to duplication of alleles for these two physically linked molecular markers. We hypothesize that the unequal crossing over was one of the mechanisms involved in tandem duplication of CC-NBS-LRR sequences in the Rps1-k region.

Amino Acid Sequence↗

PubMed2005

BMP-2 liberated from biomimetic implant coatings induces and sustains direct ossification in an ectopic rat model.

INTRODUCTION: Using a rat model, we evaluated the kinetics and histomorphometry of ectopic bone formation in association with biomimetic implant coatings containing BMP-2. MATERIALS AND METHODS: One experimental and three control groups were set up: titanium-alloy discs coated with a biomimetically co-precipitated layer of calcium phosphate and BMP-2 [1.7 microg per disc (incorporated-BMP group)]; uncoated discs (control); discs biomimetically coated with a layer of calcium phosphate alone (control); and discs biomimetically coated with a layer of calcium phosphate bearing superficially adsorbed BMP-2 [0.98 microg per disc (control)]. Discs (n = 6 per group) were implanted subcutaneously in rats and retrieved at 7-day intervals over a period of 5 weeks for kinetic, histomorphometrical, morphological and histochemical analyses. RESULTS: In the incorporated-BMP-2 group, osteogenic activity was first observed 2 weeks after implantation and thereafter continued unabated until the end of the monitoring period. The net weekly rates of bone formation per disc were 5.8 mm3 at 2 weeks and 3.64 mm3 at 5 weeks. The total volumes of bone formed per disc at these junctures were 5.8 mm3 and 10.3 mm3, respectively. Bone tissue, which was formed by a direct ossification mechanism, was deposited at distances of up to 340 microm from the implant surfaces. The biomimetic coatings were degraded gradually, initially by foreign body giant cells alone and then also by osteoclasts. Forty percent of the coating material (and thus presumably of the incorporated BMP-2) remained at the end of the monitoring period. Hence, 60% of the incorporated BMP-2 had been released. At this 5-week juncture, no bone tissue was associated with any of the control implants. CONCLUSION: BMP-2 incorporated into biomimetic calcium phosphate coatings is capable not only of inducing bone formation at an ectopic site in vivo but also of doing so with a very high potency at a low pharmacological level, and of sustaining this activity for a considerable period of time. The sustainment of osteogenic activity is of great clinical importance for the osseointegration of dental and orthopedic implants.

Acid Phosphatase↗

PubMed2005

Respiratory system responsiveness in rabbits in vivo is reduced by prolonged continuous positive airway pressure.

Active, nonanesthetized, tracheotomized rabbits were subjected to continuous positive airway pressure (CPAP) for 4 days to determine the effects of chronic mechanical strain on lung and airway function. Rabbits were maintained for 4 days at a CPAP of 6 cmH(2)O (high CPAP), at a CPAP of 0 cmH(2)O (low CPAP), or without tracheostomy (no CPAP). After treatment with CPAP, changes in respiratory resistance in response to increasing concentrations of inhaled ACh were measured during mechanical ventilation to evaluate respiratory system responsiveness in vivo. Intraparenchymal bronchial segments were isolated from the lungs of all animals to evaluate airway smooth muscle responsiveness and bronchial compliance in vitro. Rabbits maintained for 4 days at high CPAP demonstrated significantly lower responsiveness to ACh compared with rabbits that were maintained at low CPAP or with no CPAP. Airways isolated from the lungs of animals subjected to the chronic application of high CPAP were also less responsive to ACh in vitro than the airways isolated from animals subjected to low CPAP or no CPAP. The persistence of the decreased responsiveness in the excised airway tissues suggests that the decreased respiratory system responsiveness observed in vivo results primarily from direct effects on the airways. The results demonstrate that the application of prolonged mechanical strain in vivo can reduce airway reactivity.

Acetylcholine↗

PubMed2005

Rydberg electron transfer to C6H5NO2: lifetimes and characteristics of the product C6H5NO2- ions.

The nature of electron binding in C6H5NO2- ions produced by Rydberg electron transfer in K(np)C6H5NO2 collisions is investigated through measurements of the number and the lifetimes of the product ions and their dependence on Rydberg atom velocity and principal quantum number n in the range 12 <or approximately n <or approximately 30. The data are interpreted by comparison to results obtained using well-known dipole-bound and valence-bound anions. At high n direct capture into valence-bound states with a lifetime of approximately 1.6 ms is observed. At low n the data suggest that, while direct capture into valence-bound states is still possible, the majority of the observed C6H5NO2- ions result from the onset of a second reaction channel that involves the formation of a dipole-bound "doorway" state that rapidly evolves into a state with predominantly valence-bound character. These findings are discussed in the light of earlier work on electron binding to C6H5NO2.

Journal Article↗