Biomedical subjects

Xavier López

Publications and source records attributed to Xavier López.

11 recordsLinked to original sources

PubMed2007

Influence of electron-attractor substituents on the magnetic properties of Ni(II) string complexes.

Density functional theory calculations carried out on the anionic Ni(II) chain complexes {trinickeltetrakis[2,6-bis(amido)pyridine]}2- and {trinickeltetrakis[N,N'-bis(sulfonyl)pyridyldiamido]}2- show that the electron-attractor character of the sulfonyl substituent modifies the basicity of the amido ligand ends so as to raise the electronic state of the underlying metal atom from low spin (S = 0) to high spin (S = 1). The computed elongation of the outermost Ni-N bonds with the grafting of SO2H substituents is in agreement with this interpretation.

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PubMed2006

Even-numbered metal chain complexes: synthesis, characterization, and DFT analysis of [Ni4(mu4-Tsdpda)4(H2O)2] (Tsdpda2- = N-(p-toluenesulfonyl)dipyridyldiamido), [Ni4(mu4-Tsdpda)4]+, and related Ni4 string complexes.

The synthesis and the X-ray structure of two complexes exhibiting a linear chain of four nickel atoms is reported, following Ni4(mu4-phdpda)4 (1), which had been characterized previously. [Ni4(mu4-Tsdpda)4(H2O)2], where H2Tsdpda is N-(p-toluenesulfonyl)dipyridyldiamine (2), is axially coordinated to two water molecules, at variance with 1. One-electron oxidation of 2 resulted in the loss of the axial ligands, yielding [Ni4(mu4-Tsdpda)4]+, [3]+, which was also structurally characterized. Finally, we report the structure of Ni4(mu4-DAniDANy)4 (4), a complex synthesized starting from the new ligand N,N'-bis-p-anisyl-2,7-diamino-1,8-naphthyridine. Magnetic measurements concluded that 4 is diamagnetic, like 1, whereas 2 is antiferromagnetic (-2J(14) = 80 cm(-)(1), using the Heisenberg Hamiltonian H = -2J(14) S(1).S(4)), as are other axially coordinated chains with an odd number of nickel atoms. DFT calculations are reported on these complexes in order to rationalize their electronic structure and their magnetic behavior. The magnetic properties of the [Ni4]8+ complexes are governed by the electronic state of the Ni(II) atoms, which may be either low-spin (S = 0), or high-spin (S = 1). DFT calculations show that the promotion to high spin of two Ni atoms in the chain, either external or internal, depends on the interplay between axial and equatorial coordination. The synergy between axial coordination and the presence of electron-withdrawing toluenesulfonyl substituents in 2 favors the promotion to the high-spin state of the terminal Ni atoms, thus yielding an antiferromagnetic ground state for the complex. This is at variance with complexes 1 and 4, for which the lowest quintet state results from the promotion to high spin of the internal nickel atoms, together with an important ligand participation, and is destabilized by 9 to 16 kcal mol(-1) with respect to the diamagnetic ground state.

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PubMed2006

Structural evolution in polyoxometalates: a DFT study of dimerization processes in Lindqvist and Keggin cluster anions.

Density functional theory (DFT) calculations are used to investigate dimerization, by acid condensation, between Lindvist and Keggin cluster anions. When specific addendum atoms are present (notably, Ti, V, Nb, and Cr), these clusters dimerize in the presence of acid via the formation of mu-O linkages. These processes may be viewed as molecular models for the formation of metal-oxygen bonds in the active sites of metalloenzymes, or in materials chemistry, and we here provide detailed information concerning these reactions. For this, DFT calculations are used to provide insight into the mechanism(s) associated with dimerization of Lindqvist clusters, W5MO19(n-) (M = W, Mo, V, Nb, and Ti) in acidic media. In full accord with experimental data, our calculations show that dimerization of Nb and Ti derivatives is thermodynamically favored and that this is not the case for dimerization between Mo, V, and W addendum atoms. In addition, dimerization of PW11TiO40(5-) and SiW11NbO40(5-) to give the corresponding dimers was also calculated to be exothermic. Two possible mechanisms, involved in two competing pathways, are evaluated and discussed. Conclusions are presented concerning the role played by the nature of the metal atoms taking part in M-mu-O-M bond formation. A correlation is established between the relative strengths of specific terminal M=O bonds in monomeric precursors and the tendency of these to form M-mu-O-M bonds.

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PubMed2005

Redox properties of polyoxometalates: new insights on the anion charge effect.

In this paper we study the electronic structure of Lindqvist, Keggin, Dawson and Preyssler polyoxometalates (POMs) at the DFT level, particularly their LUMOs and reduction energies. Our aim was to revisit the previously reported evidence that a linear relationship exists between reduction potentials and molecular charges in Keggin anions. In this line of thought, we calculated one simple structural parameter-volume of the clusters-so that the corresponding volume charge density, rho(v), could be estimated. Contrary to what we expected, the connection between rho(v) and the experimental reduction potentials is not evident since q/V itself does not justify the scale of oxidizing powers. Complementary calculations were performed using the clathrate model, anion@W(m)O(3m), analyzing separately the effects of the size of the neutral cages and the molecular charge, q, upon the redox properties. The parameter m emulates the size (volume) of the clusters, only approximately, but with the benefit that it is easily accounted for. A linear relationship was found between the difference in LUMO energies for the neutral and charged clusters and the q/m ratio.

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PubMed2005

Polyoxometalates in solution: Molecular dynamics simulations on the alpha-PW12O40(3-) Keggin anion in aqueous media.

The Keggin anion, PW12O40(3-), is one of the most representative polyoxometalates (POMs). In recent years increasing theoretical work focused on this family of compounds has explained or even predicted some of their properties using quantum mechanics methods. In this report we applied for the first time molecular dynamics (MD) to the title compound to analyze its interactions with water. We used three atomic charge definitions (Mulliken, ChelpG, and formal charges) to carry out MD simulations. The results show that the terminal oxygens of the cluster are invariably most effectively solvated by water because of their prominent position within the framework. On the other hand, bridging oxygens, which are confined in more internal positions, concentrate a smaller portion of the whole solvation. We investigated the hydrogen bonds existing between water and the cluster, confirming that the terminal positions form more contacts with H2O than any other site of the cluster. In the end, the lifetime of such contacts is longer with bridging oxygens, presumably due to their higher atomic charge.

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PubMed2004

DFT study on the five isomers of PW(12)O(40)(3)(-): relative stabilization upon reduction.

The electronic characteristics and the redox properties of each isomer of PW(12)O(40)(3)(-) depend on the arrangement adopted by the metal-oxide framework. At the DFT/BP86 level, we computed the structures of the five isomers of PW(12)O(40)(3)(-) in oxidized form. The energy scale fits the experimental findings as well as the number of rotated triads of the metal-oxide core since the energy grows as follows: alpha < beta < gamma < delta < epsilon. The reduced clusters behave differently as long as the beta form becomes the most stable isomer after the second reduction. The gamma isomer also gains stability upon reduction, but not enough to be competitive with beta. For the 4-fold reduced PW(12) cluster, the energy difference computed between beta and gamma in solution is 11 kcal mol(-)(1). This large difference proves that the beta --> gamma isomerization is not favored upon simple reduction. The other isomers, delta and epsilon, are much more unstable than alpha or beta in any reduction state.

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PubMed2004

First isolated active titanium peroxo complex: characterization and theoretical study.

The protonated titanium peroxo complex [Bu(4)N](4)[HPTi(O(2))W(11)O(39)] (1) has been first prepared via interaction of the micro-oxo dimeric heteropolytungstate [Bu(4)N](8)[(PTiW(11)O(39))(2)O] (3) with an excess of 30% aqueous H(2)O(2) in MeCN. Peroxo complex 1 has been characterized by using elemental analysis, UV-vis, IR, resonance Raman (RR), (31)P and (183)W NMR spectroscopy, cyclic voltammetry, and potentiometric titration. The electronic and vibrational spectra of 1 are very similar to those of the well-known unprotonated titanium peroxo complex [Bu(4)N](5)[PTi(O(2))W(11)O(39)] (2), while (31)P and (183)W NMR spectra differ significantly. A compilation of the physicochemical techniques supports a monomeric Keggin type structure of 1 bearing one peroxo ligand attached to Ti(IV) in a eta(2)-coordination mode. The protonation of the titanium peroxo complex results in an increase of the redox potential of the peroxo group, E(1/2) = 1.25 and 0.88 V relative to Ag/AgCl reference electrode for 1 and 2, respectively. In contrast to 2, 1 readily reacts with 2,3,6-trimethylphenol (TMP) at 40 degrees C in MeCN to give 2,2',3,3',5,5'-hexamethyl-4,4'-biphenol (BP) and 2,3,5-trimethyl-p-benzoquinone (TMBQ). The proportion between BP and TMBQ in the reaction products depends on the TMP/1 ratio. When a 2-fold excess of TMP is used, the main reaction product is BP (90%), while using a 2-fold excess of 1 leads to TMBQ (95%). On the basis of the product study, a homolytic oxidation mechanism that implicates the formation of phenoxyl radicals is suggested. The RR deuterium labeling experiments show that the activating proton is most likely localized at a Ti-O-W bridging oxygen rather than at the peroxo group. Theoretical calculations carried out at the DFT level on the protonated and unprotonated titanium peroxo derivatives also propose that the most stable complex is formed preferentially after protonation of the Ti-O-W site; however, both Ti-OH-W and TiOO-H protonated anions could coexist in solution.

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PubMed2004

Are the solvent effects critical in the modeling of polyoxoanions?

DFT calculations were driven for a set of differently charged polyoxoanions in the gas phase and in solution. We have calculated and analyzed their geometries and orbital energies to trace simple rules of behavior regarding the modeling of anions in isolated form. We discuss the quality of the results depending on the molecular charge, q, and the size of the cluster in terms of the number of metal centers, m. When the q/m ratio reaches a value of approximately 0.8, DFT calculations for the isolated anion fail to describe the gap between the band of occupied oxo orbitals and the set of unoccupied orbitals delocalized among the metal atoms. In these cases the incorporation of the stabilizing external fields generated by the solvent through continuum models improves the geometries and orbital energies.

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PubMed2003

Relative stability in alpha- and beta-Wells-Dawson heteropolyanions: a DFT study of [P2M18O62]n- (M = W and Mo) and [P2W15V3O62]n-.

To determine the relative stability of alpha and beta rotational isomers of the Wells-Dawson structure, the energies of some fully oxidized, single- and 2-fold-reduced systems were calculated by means of DFT calculations. The thermodynamics of the alpha/beta equilibrium for P(2)M(18) Wells-Dawson anions is slightly shifted toward the alpha structure, but the difference in stability is smaller than in the Keggin anions. Tungstates (2:18) and vanadotungstates (2:3:15) show minimal redox differences between isomers, as the electronic structure of the frontier orbitals appears to be nearly the same. In addition, an alternative arrangement is proposed that have long and short Mo-O bonds in beta-P(2)Mo(18) with an idealized C(3) symmetry. This arrangement was computed to be about 8.2 kcal mol(-1) more stable than the nonalternate framework of C(3)(v)() symmetry. The P(2)Mo(18) is the Wells-Dawson anion for which the alpha/beta equilibrium most resembles that of the Keggin anions.

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PubMed2003

Ab initio and DFT modelling of complex materials: towards the understanding of electronic and magnetic properties of polyoxometalates.

In this review we summarise the quantum chemistry studies carried out by several groups over the last ten years on polyoxometalates, or polyoxoanions. This is an immense family of compounds made up of transition metal ions in their highest oxidation state and oxo ligands. The continuous progress of computers in general, and quantum chemistry software in particular, has enabled a number of topics in polyoxometalate chemistry to be studied from the electronic structure of the most representative polyoxometalate, the so-called Keggin anion, to the factors governing the inclusion complexes and the magnetism in reduced complexes.

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PubMed2002

Electronic properties of polyoxometalates: electron and proton affinity of mixed-addenda Keggin and Wells-Dawson anions.

A series of systematic DFT calculations were conducted on Keggin [SiW(9)M(3)O(40)](n-), M = Mo, V, and Nb; and Wells-Dawson anions [P(2)M(18)O(62)],(6-) M = W and Mo; [P(2)M(15)M(3)'O(62)](m-), M = W and Mo, M' = W, Mo, and V to analyze the redox properties and the basicity of the external oxygen sites in polyoxometalates with nonequivalent addenda metals. The energy and composition of the lowest unoccupied orbitals, formally delocalized over the addenda atoms, determine the redox properties of a polyoxometalate. When a Mo(6+) substitutes one W(6+) in the 1:12 tungstate, the energy of the LUMO decreases and the cluster is more easily reduced. The tungstoniobates behave differently because the niobium orbitals insert into the tungsten band and the reduction of [SiW(9)Nb(3)O(40)](7-) yields the blue species SiW(9)Nb(3) 1e and not the cluster SiW(9)Nb(2)Nb(IV). In Wells-Dawson structures, the polar and equatorial sites have different electron affinities and the reduction preferentially occurs in the equatorial sites. Inserting ions with larger electron affinities into the polar sites can modify this traditional conduct. Hence, the trisubstituted [P(2)W(15)V(3)O(62)](9-) anion is reduced in the vanadium polar sites. By means of molecular electrostatic potential maps and the relative energy of the various protonated forms of [SiW(9)V(3)O(40)](7-) and [SiW(9)Mo(3)O(40)](4-), we established the basicity scale: OV(2) > OMo(2) > OW(2) > OV > OW > OMo. Finally, a continuum model for the solvent enabled us to compare anions with different total charges.

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