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Biomedical subjects

Tim McInerney

Publications and source records attributed to Tim McInerney.

2 recordsLinked to original sources

United snakes.

Since their debut in 1987, snakes (active contour models) have become a standard image analysis technique with several variants now in common use. We present a framework called "United Snakes", which has two key features. First, it unifies the most popular snake variants, including finite difference, B-spline, and Hermite polynomial snakes in a consistent finite element formulation, thus expanding the range of object modeling capabilities within a uniform snake construction process. Second, it embodies the idea that the heretofore presumed competing technique known as "live wire" or "intelligent scissors" is in fact complementary to snakes and that the two techniques can advantageously be combined by introducing an effective hard constraint mechanism. The United Snakes framework amplifies the efficiency and reproducibility of the component techniques, and it offers more flexible interactive control while further minimizing user interactions. We apply United Snakes to several different medical image analysis tasks, including the segmentation of neuronal dendrites in EM images, dynamic chest image analysis, the quantification of growth plates in MR images and the isolation of the breast region in mammograms, demonstrating the generality, accuracy and robustness of the tool.

Algorithms↗

Deformable organisms for automatic medical image analysis.

We introduce a new approach to medical image analysis that combines deformable model methodologies with concepts from the field of artificial life. In particular, we propose "deformable organisms", autonomous agents whose task is the automatic segmentation, labeling, and quantitative analysis of anatomical structures in medical images. Analogous to natural organisms capable of voluntary movement, our artificial organisms possess deformable bodies with distributed sensors, as well as (rudimentary) brains with motor, perception, behavior, and cognition centers. Deformable organisms are perceptually aware of the image analysis process. Their behaviors, which manifest themselves in voluntary movement and alteration of body shape, are based upon sensed image features, pre-stored anatomical knowledge, and a deliberate cognitive plan. We demonstrate several prototype deformable organisms based on a multiscale axisymmetric body morphology, including a "corpus callosum worm" that can overcome noise, incomplete edges, considerable anatomical variation, and interference from collateral structures to segment and label the corpus callosum in 2D mid-sagittal MR brain images.

Algorithms↗