Biomedical subjects
Publications and source records attributed to Tetsuro Majima.
Endonuclease BamHI mutants having an azophenylalanine residue in the dimer interface (azoAla-BamHI) were synthesized; while the activity was almost suppressed using trans-azoAla-BamHI, the cis-isomer generated with photoirradiation recovered its intrinsic activity.
Mechanism of photo-induced electron transfer and the subsequent hole transfer in DNA has been studied extensively, but so far we are not aware of any reliable report of the observation of the long-distance hole-transfer process. In this article, we demonstrate the results of direct observation for the long-distance hole transfer in double-helical DNA over 100 A with time-resolved transient absorption measurements. DNA conjugated with naphthalimide (NI) and phenothiazine (PTZ) (which worked as electron-acceptor and donor molecules, respectively) at both 5' ends was synthesized to observe the hole-transfer process. Site-selective charge injection into G by means of the adenine-hopping process was accomplished by excitation of NI with a 355-nm laser flash. Transient absorption around 400 nm, which was assigned to the NI radical anion, was observed immediately after the irradiation of a laser flash, indicating that the charge separation between NI and the nearest G occurred. Then, the transient absorption of the PTZ radical cation (PTZ(*+)) at 520 nm was emerged, which was attributed to the hole transfer through DNA to the PTZ site. By monitoring the time profiles of the transient absorption of PTZ(*+) for NI-A(6)-(GA)(n)-PTZ and NI-A(6)-(GT)(n)-PTZ (n = 2, 3, 4, 6, 8, 12) (base sequences correspond to those for DNA modified with NI), the long-distance hole-transfer process from G to PTZ, which occurred in the time scale of microsecond to millisecond, was observed directly. By assuming an average distance of 3.4 A between base-pairs, total distance reaches 100 A for n = 12 sequences. Our results clearly show the direct observation of the long-distance hole transfer over 100 A.
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Intermolecular electron transfer (ELT) from a series of naphthalene derivatives (NpD) in the higher triplet excited states (T(n)) to carbon tetrachloride (CCl(4)) in Ar-saturated acetonitrile was observed using the two-color two-laser flash photolysis method. The ELT efficiency depended on the driving force of ELT. Since the ELT from the T(n) state occurred competitively with the internal conversion (IC, T(n) --> T(1)) and the triplet energy transfer (ENT), the ELT became apparent only when sufficient free energy change of ELT was attained. On the other hand, ELT from the T(1) state was not observed, although ELT from the T(1) state with sufficiently long lifetime has a slightly exothermic driving force. The fast ELT from the T(n) state and lack of the reactivity of the T(1) state were explained well by the "sticky" dissociative electron-transfer model based on one-electron reductive attachment to CCl(4) leading to the C-Cl bond cleavage.
The strategy for the design of photochemically controllable enzymes by manipulating the dimer interface is described. Employing a restriction endonuclease BamHI, the selective incorporation of amino acids having a photoremovable 6-nitroveratryl group into the specific position (Lys132) in the dimer interface of the BamHI mutant (H133A) was performed. The activity of the photofunctionalized BamHI mutant was significantly suppressed, and the following photoirradiation induced the recovery of the activity. In addition, uncaging of the 6-nitroveratryl group introduced to Lys132 did not seriously reduce the catalytic activity and affinity for the substrate. These results indicate that the activity of the enzyme can be effectively regulated by caging and uncaging of the specific amino acid in the dimer interface using the photoremovable group.
Stepwise photocleavage of two naphthylmethyl-oxygen bonds of 1,8-bis[(4-benzoylphenoxy)methyl]naphthalene (1,8-(BPO-CH2)2Np, 1) was observed during three-color, three-laser flash photolysis at room temperature. The mechanism from 1 to the final product, acenaphthene (2), was clearly elucidated. The first (308 nm, 5 mJ pulse-1) XeCl laser excited 1 to the lowest triplet excited state 1(T1), in which the excited energy was localized in the naphthalene moiety, but the C-O bond cleavage did not occur. The second (430 nm, 7 mJ pulse-1) OPO laser excited 1(T1) to the higher triplet excited states 1(Tn) in which the excited energy is delocalized in the naphthalene moiety and C-O bonds, and one C-O bond cleavage occurred. The third (355 nm, 10 mJ pulse-1) YAG laser excited the carbon-centered radical in the ground state 1-(BPO-CH2)NpCH2*(D0) to its excited states 1-(BPO-CH2)NpCH2*(Dn), from which the second C-O bond cleavage occurred to give 2 as the final product. This is a successful example of stepwise cleavage of two equivalent C-O bonds in a molecule using three-color three-laser photolysis method.
The formation of the dimer radical cation (D*+) of 4-(methylthio) benzoic acid on a TiO2 surface is demonstrated using the time-resolved diffuse reflectance technique. The observed time-resolved diffuse reflectance spectral shape significantly depends on the substrate concentrations. The substrate concentration dependences of the initial transient signal intensity (%abs.(t=0)) and the amount of adsorbates (n(ad)) clearly suggest that the formation of D*+ is attributableto the high local substrate concentration on the TiO2 surface. The electronic influence of substituents on the formation of D*+ is also discussed.
The substitution of 2-aminopurine (Ap) for A7 in the human telomeric sequence d[AGGG(TTAGGG)(3)] resulted in a significant increase in the fluorescence intensity of Ap for the conformational change from duplex to quadruplex.
Disulfide cross-linked oligonucleotides, which connect two different sequences of DNA strands, have been synthesized and characterized. Two double helices connected by two different cross-linked oligonucleotides can be arranged in both parallel and antiparallel orientations by addition of the specific complementary strands.
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One-electron oxidation of various biphenyl derivatives such as biphenyl (BP), 4-hydroxybiphenyl (HBP), 4,4'-biphenol (DHBP), 4-methoxy-4'-hydroxybiphenyl (MHBP), 4-cyano-4'-hydroxybiphenyl (CNHBP), 4-biphenylmethanol (BPM), and 4-biphenylethanol (BPE) adsorbed on the surface of TiO2 powder slurried in acetonitrile has been investigated by time-resolved diffuse reflectance spectroscopy. From the Langmuir adsorption isotherms for BP and HBP, it is suggested that the OH group plays an important role in adsorbing on the surface ofTiO2. The spectroscopic characteristics of charge transfer complexes of substrates and the TiO2 surface have been studied by steady-state diffuse reflectance spectroscopy. The high efficiency of a one-electron oxidation reaction was observed for hydroxyl-substituted BPs (HBP, DHBP, MHBP, CNHBP), compared with BPM and BPE, indicating that the strength of the electronic coupling element (H(DA)) between the electron acceptor and donor is a key factor in the one-electron oxidation of a substrate adsorbed on the TiO2 powder. The effects of the distance between the electron donor and the acceptor on the electronic coupling element are also discussed.
The one-electron attachment reaction of 8-bromo-2'-deoxyguanosine ((Br)G) in DNA was studied by comparing that in B- and Z-DNA. Oligodeoxynucleotides (ODNs) modified by (Br)G were synthesized as Z-DNA in which the syn-conformation deoxyguanosine is stabilized by steric interference between the 8-bromo group of (Br)G and the sugar moiety. Debromination from the (Br)G-modified ODNs occurred from the one-electron attachment during the gamma-radiolysis. The structural dependence of B- and Z-DNA was observed for the one-electron attachment reaction. The conversion of (Br)G was higher in Z-DNA than in B-DNA. Because the solvent-accessible surface of the purine base in Z-DNA is greater than that in B-DNA, it is demonstrated that the reactivity of purine base C8 is enhanced in Z-DNA compared to that in B-DNA.
Charge transfer in DNA is of current interest because of the involvement of charge transfer in oxidative DNA damage and electronic molecular devices. We have investigated the charge separation process via the consecutive adenine (A)-hopping mechanism using laser flash photolysis of DNA conjugated with naphthaldiimide (NDI) as an electron acceptor and phenothiazine (PTZ) as a donor. Upon the 355-nm laser flash excitation of NDI, the charge separation and recombination process between NDI and PTZ was observed. The yields of the charge separation via the consecutive A-hopping were slightly dependent upon the number of A bases between the two chromophores, while the charge recombination rate was strongly dependent upon the distance. The charge-separated state persisted over 300 micros when NDI was separated from PTZ by eight A bases. Furthermore, the rate constant of the A-hopping process was determined to be 2 x 10(10) s(-1) from an analysis of the yield of the charge separation depending on the number of A-hopping steps.
The hole transfer causes the long-lived charge-separated state in DNA during the photosensitized one-electron oxidation of DNA. The combination of the transient absorption measurement and DNA damage quantification by HPLC clearly demonstrated that the yield of the DNA damage correlates well with the lifetime of the charge-separated state.
The electron transfer quenching of 2-aminopurine by guanine and 7-deazaguanine was investigated in B- and Z-DNA, and an increase in the fluorescence intensity of 2-aminopurine upon B- to Z-DNA transition was demonstrated.
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Using nucleoside derivatives, which are soluble in dichloromethane, we have experimentally demonstrated that the reduction potential of cytosine is lowered by base pairing with guanine.
Disulfide cross-linked oligonucleotides for connecting two DNA double helixes have been designed, synthesized, and characterized. Employing these cross-linked oligonucleotides, two double helixes can be arranged side by side, and the orientations can be controlled both in parallel and antiparallel ways by addition of a specific complementary DNA strand.