Biomedical subjects

Tae-Soo Chon

Publications and source records attributed to Tae-Soo Chon.

5 recordsLinked to original sources

PubMed2005

Computational characterization of behavioral response of medaka (Oryzias latipes) treated with diazinon.

The behavior of indicator specimens in response to sub-lethal doses of toxic substances has been used to detect contamination in aquatic ecosystems. Changes in the movement behaviors of medaka (Oryzias latipes) were analyzed after being treated with diazinon at a concentration of 0.1 mg/l. The movement tracks of medaka were continuously recorded in two-dimension by a digital image processing system both before and after the treatments. Subsequently, two computational methods--two-dimensional fast Fourier transform (2D FFT) and self-organizing map (SOM), were implemented to extract information from the movement data. The differences in the shapes of the movement tracks before and after the treatments were clearly manifested through 2D FFT. The short-distance, irregular turnings in the movement tracks observed after the treatments in the time domain were characteristically transformed to circular or ellipsoidal patterns in the frequency domain. The amplitudes of 2D FFT were efficiently classified by SOM, demonstrating the effects of the different treatments. To evaluate the feasibility of information extraction by 2D FFT, SOM was similarly carried out on the parameters (speed, meander, stop duration, etc.) conventionally used for characterizing the movement tracks. 2D FFT was more efficient in information extraction from the movement data than the parameters. The 2D FFT and SOM were useful as computational methods for automatically detecting response behaviors of indicator specimens exposed to toxic chemicals in aquatic ecosystems.

Animals↗

PubMed2005

Movement behaviour of Medaka (Oryzias latipes) in response to sublethal treatments of diazinon and cholinesterase activity in semi-natural conditions.

Behavioural changes of medaka (Oryzias latipes) treated with an anticholinesterase insecticide, diazinon (0.1 mg L(-1)), were continuously observed for 4 days in semi-natural conditions. Although variations occurred in individual specimens, the movement tracks appeared differently with typical short-range movement with irregular turns and shaking after the treatments. Eight movement patterns frequently observed before and after the treatments were selected, and the variables characterising the movement patterns were compared quantitatively. The variables were clearly differentiated when the movement patterns were correspondingly matched before and after the treatments (e.g., vertical movements, horizontal movements, etc). Meander and stop duration were highly different among the selected movement patterns. Additionally, different degree of toxic response behaviours could also be detected by quantitative characterisation of the variables. Response behaviour was confirmed with toxicological experiments that show the decrease in the acetylcholine esterase activity in the head and body of specimens. Quantitative investigations on the variables of the movement tracks suggested the usefulness of response behaviour as a monitoring tool for environmental assessment.

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PubMed2004

Hierarchical community classification and assessment of aquatic ecosystems using artificial neural networks.

Benthic macroinvertebrate communities in stream ecosystems were assessed hierarchically through two-level classification methods of unsupervised learning. Two artificial neural networks were implemented in combination. Firstly, the self-organizing map (SOM) was used to reduce the dimension of community data, and secondly, the adaptive resonance theory (ART) was subsequently applied to the SOM to further classify the groups in different scales. Hierarchical grouping in community data efficiently reflected the impact of the environmental factors such as topographic conditions, levels of pollution, and sampling location and time across different scales. New community data not included in the training process were used to test the trained network model. The input data were appropriately grouped at different hierarchical levels by the trained networks, and correspondingly revealed the impact of environmental disturbances and temporal dynamics of communities. The hierarchical clusters based on a two-level classification method could be useful for assessing ecosystem quality and community variations caused by environmental disturbances.

Animals↗

PubMed2003

Patterning and predicting aquatic macroinvertebrate diversities using artificial neural network.

A counterpropagation neural network (CPN) was applied to predict species richness (SR) and Shannon diversity index (SH) of benthic macroinvertebrate communities using 34 environmental variables. The data were collected at 664 sites at 23 different water types such as springs, streams, rivers, canals, ditches, lakes, and pools in The Netherlands. By training the CPN, the sampling sites were classified into five groups and the classification was mainly related to pollution status and habitat type of the sampling sites. By visualizing environmental variables and diversity indices on the map of the trained model, the relationships between variables were evaluated. The trained CPN serves as a 'look-up table' for finding the corresponding values between environmental variables and community indices. The output of the model fitted SH and SR well showing a high accuracy of the prediction (r>0.90 and 0.67 for learning and testing process, respectively) for both SH and SR. Finally, the results of this study, which uses the capability of the CPN for patterning and predicting ecological data, suggest that the CPN can be effectively used as a tool for assessing ecological status and predicting water quality of target ecosystems.

Animals↗

PubMed2002

Pattern recognition of the movement tracks of medaka (Oryzias latipes) in response to sub-lethal treatments of an insecticide by using artificial neural networks.

Specimens of medaka (Oryzias latipes) were observed continuously through an automatic image recognition system before and after treatments of an anti-cholinesterase insecticide, diazinon (0.1 mg/l), for 4 days in semi-natural conditions (2 days before treatment and 2 days after treatment). The "smooth" pattern was typically shown as a normal movement behavior, while the "shaking" pattern was frequently observed after treatments of diazinon. These smooth and shaking patterns were selected for training with an artificial neural network. Parameters characterizing the movement tracks, such as speed, degree of backward movements, stop duration, turning rate, meander, and maximum distance movements in the y-axis of 1-min duration, were given as input (six nodes) to a multi-layer perceptron with the back propagation algorithm. Binary information for the smooth and shaking patterns was separately given as the matching output (one node), while eight nodes were assigned to a single hidden layer. As new input data were given to the trained network, it was possible to recognize the smooth and shaking patterns of the new input data. Average recognition rates of the smooth pattern decreased significantly while those for the shaking pattern increased to a higher degree after treatments of diazinon. The trained network was able to reveal the difference in the shaking pattern in different light phases before treatments of diazinon. This study demonstrated that artificial neural networks could be useful for detecting the presence of toxic chemicals in the environment by serving as in-situ behavioral monitoring tools.

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