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Biomedical subjects

T Yonetani

Publications and source records attributed to T Yonetani.

At least 73 records · Page 4Linked to original sources

Isotropically shifted NMR resonances for the proximal histidyl imidazole NH protons in cobalt hemoglobin and iron-cobalt hybrid hemoglobins. Binding of the proximal histidine toward porphyrin metal ion in the intermediate state of cooperative ligand binding.

Exchangeable imidazole NH proton nuclear magnetic resonance (NMR) signals of the proximal histidine F8, which is directly coordinated to the paramagnetic porphyrin cobalt ion, have been measured for cobalt-substituted deoxyhemoglobins (deoxy-CoHb) and iron-cobalt hybrid hemoglobins, alpha (Co)2 beta (Fe)2 and alpha (Fe)2 beta (Co)2. Comparison of NMR spectra between these Co-substituted hemoglobins and natural Fe-containing hemoglobin allows the assignment of the NH signals to the specific subunits, namely, a signal at 53.8 ppm to the alpha-subunits and a signal at 58.4 ppm to the beta-subunits for deoxy-CoHb at 23 degrees C, respectively. The coordination of carbon monoxide to the beta-subunits in alpha (Co)2- beta (Fe)2 gave rise to an 8 ppm downfield shift of the proximal histidyl NH signal in the deoxy alpha (Co)2 subunits. In contrast, the coordination of carbon monoxide to the alpha-subunits in alpha (Fe)2 beta (Co)2 showed only a 1 ppm downfield shift for the deoxy beta (Co)2 subunits. These observations suggest that the metal-histidyl coordination bonds in the deoxy cobalt subunits are strengthened by the ligation of carbon monoxide in the counterpart ferrous subunits. However, the change of the coordination was much larger in the alpha (Co)2 subunits than that in the beta (Co)2 subunits. Line-width analysis of the NH signals for CO-bound hybrid hemoglobins gave a mean exchange lifetime of 3.2 X 10(3) S-1 for the T to R quaternary structural transition. The proximal histidyl binding situation at some liganded states is discussed in relation to the quaternary structure of hemoglobin molecules.

Chemical Phenomena↗

Electron paramagnetic resonance studies on cobalt hemoglobin, iron-cobalt hybrid hemoglobins, and their related model complexes. Characterization of proximal histidine binding to porphyrin cobalt(II) ion and its transition associated with subunit interaction.

Electron paramagnetic resonance studies have been conducted on iron-cobalt hybrid deoxyhemoglobins and cobalt deoxyhemoglobin. Examination of alpha (Co)2 beta (Fe)2 hybrid hemoglobin at two different microwave frequencies revealed two sets of axial-symmetric electron paramagnetic resonance (EPR) signals rather than the anisotropic splitting of the g signal as reported previously [Ikeda-Saito, M., Yamamoto, H., & Yonetani, T. (1977) J. Biol. Chem. 252, 8639-8644]. One of these two sets is a characteristically broad spectrum with g = 2.38 and g parallel = 2.03; the other, a sharp spectrum with g = 2.33 and g parallel = 2.03. The alpha-subunits of deoxy-CoHb also exhibited a complex spectrum with a mixture of these two different types of signals. The relative compositions of these two signals were calculated for deoxy-alpha (Co)2 beta (Fe)2 and the alpha-subunits of CoHb, which were profoundly sensitive to the pH of the medium and also to the presence of allosteric effectors. A positive correlation was noticed between the spectral characteristics and the equilibrium extent of oxygenation, showing that the broad component may be associated with the electronic state of the porphyrin metal ion in T-state hemoglobin and the sharp component with that in the R state. In contrast, the complementary hybrid alpha (Fe)2 beta (Co)2 and the beta-subunits in CoHb showed relatively narrow spectra under similar conditions, and only small changes were noted with variation of pH and addition of inositol hexaphosphate. These spectra were close to the sharp component of the alpha-subunits associated with the R state. Comparison of the hemoglobin EPR spectra with those of model cobaltous porphyrin complexes revealed that the restraint that is operative at the fifth ligand position of the prosthetic group in the T state is released in the R state. These ligand binding properties were discussed in relation to the regulation of oxygen binding to hemoglobin.

Cobalt↗

Import of proteins into mitochondria. Import and maturation of the mitochondrial intermembrane space enzymes cytochrome b2 and cytochrome c peroxidase in intact yeast cells.

The import of cytochrome b2 and cytochrome c peroxidase into mitochondria was investigated by pulse-chase experiments with intact yeast cells combined with subcellular fractionation. Import and processing of the precursors of these intermembrane space proteins is blocked by uncouplers of oxidative phosphorylation, indicating that an "energized" inner membrane is required. Cytochrome b2 is processed in two steps. The first step involves energy-dependent transport across both mitochondrial membranes and cleavage by a matrix-located protease to yield an intermediate which is smaller than the precursor, but larger than the mature protein. The second step involves conversion of the intermediate to the mature form. Whereas the precursor and the mature form are soluble, the intermediate is membrane-bound and exposed to the intermembrane space. The maturation of cytochrome c peroxidase is much slower than that of cytochrome b2. Proteolytic processing rather than import is rate-limiting since cytochrome c peroxidase precursor labeled during a 3-min pulse is already found attached to the outer face of the mitochondrial inner membrane. Import of cytochrome b2 and probably also of cytochrome c peroxidase thus involves energy-dependent transport to the matrix and cleavage by a matrix-localized protease. Maturation of cytochrome b2 proceeds in the sequence: soluble precursor leads to membrane-bound intermediate form leads to soluble mature form.

Biological Transport↗

Evidence for hydrogen bonding of bound dioxygen to the distal histidine of oxycobalt myoglobin and haemoglobin.

The origin of the differences in oxygen binding energy in various haemoglobins and myoglobins has long been debated. Perutz proposed that the haem-coordinated histidine (proximal histidine) strains the haem iron in low affinity globins but relaxes it in high affinity globins. The existence of such tension in T-structure deoxyhaemoglobin (deoxyHb) was recently confirmed by electron paramagnetic resonance (EPR), resonance Raman and NRM spectroscopy. Although its contribution to the free energy of cooperativity is insignificant in the deoxy state, the tension at the haem is considered to be approximately 1 kcal mol-1 for the ligated form in which the haem iron moves into the porphyrin plane. The remaining free energy is probably stored in other parts of the molecule. Therefore, a study of the stabilization mechanisms of the oxygenated form became increasingly important. A hydrogen bond between the bound oxygen and the distal histidine has been proposed by Pauling; this would be expected to stabilize the oxy form of the protein and could contribute to the regulation of the oxygen affinity through the oxygen dissociation rate. A series of EPR and functional studies on various cobalt-substituted monomeric haemoglobins and myoglobins suggested the presence of such hydrogen bonding and it has recently been established in crystals of oxy iron myoglobin (oxyFeMb) and in oxyhaemoglobin. Here we present resonance Raman spectra of the oxy forms of cobalt--porphyrin-substituted myoglobin and haemoglobin (CoMb and CoHb) recorded in buffered H2O and D2O solutions at 406.7 nm excitation. Only the Raman lines corresponding to the O-O stretching mode of the bound oxygen, appearing near 1,130 cm-1, are shifted (2-5 cm-1) replacement of H2O by D2O; no other vibrations, including the Co--O2 stretching mode, exhibit any frequency shifts. This indicated that the bound oxygen in oxyCoMb and in both subunits of oxyCoHb interacts with the adjacent exchangeable proton, and confirms the formation of a hydrogen bond between the bound oxygen and the distal histidine.

Histidine↗

Studies on Scapharca hemoglobins. Properties of the dimeric protein reconstituted with Fe- or Co-porphyrin.

A native globin from the dimeric hemoglobin, hemoglobin I, of the mollusc Scapharca inaequivalvis has been obtained with the acid-acetone method. The globin has a lower sedimentation coefficient than the native protein at neutral pH; its reconstitution product with natural heme has the same physicochemical and functional properties as the native protein. proto- and meso-cobalt hemoglobin I have been prepared and characterized. proto-Cobalt hemoglobin I binds oxygen reversibly with a lower affinity and a lower cooperativity than native hemoglobin I; thus, the changes in the functional properties brought about by substitution of iron with cobalt are similar to those observed in human hemoglobin A. The EPR spectra of deoxy-proto-cobalt hemoglobin I and of the photolysis product of oxy-meso-cobalt hemoglobin I indicate that two histidine residues are the apical heme ligands. The broad signal at g = 2.38 in deoxy-proto-cobalt hemoglobin I points to a constrained structure of the heme site in this derivative which results from a distorted coordination of the hindered proximal histidine. A similar structure has been proposed previously for the alpha chains in deoxy-cobalt hemoglobin A.

Apoproteins↗

Ligand orientation of oxyproto- and oxymesocobalt porphyrin-substituted myoglobin by single crystal EPR spectroscopy.

Single crystals of oxyproto- and oxymesocobalt myoglobin have been examined by electron paramagnetic resonance spectroscopy at ambient and cryogenic temperatures in order to determine the principal values and eigenvectors of g tensors and the hyperfine coupling tensors. The Co--O--O bond angle was determined to be 125 degrees +/- 5 degrees for oxyprotocobalt myoglobin, and 153 degrees +/- 5 degrees for oxymesocobalt myoglobin at ambient temperature. This result suggests that differences in stereochemical interactions of the modified 2,4-side chains of porphyrin with protein contribute to the ligand orientations as well as the altered ligand-binding behavior in these hemoproteins. Upon freezing, two unequivalent orientations of the O--O axis (species I and II) were found in both oxycobalt myoglobin single crystals. Shifts of the resonance spectra of these species were observed below the freezing point of the crystals. The signal intensities of two paramagnetic species in oxyprotocobalt myoglobin were approximately equivalent (I congruent to II), whereas those in oxymesocobalt myoglobin were quite different (I greater than II) at 77 K. The present electron paramagnetic resonance studies demonstrate that changes in the bonding structure of Co--O2 are induced upon freezing the biological macromolecule, including the movement of the residues of the heme environment.

Animals↗

Single-crystal electron paramagnetic resonance studies of photolyzed oxy- and nitric oxide-cobalt myoglobins.

Low-temperature photodissociation of oxygen from oxy-cobalt myoglobin was studied by single-crystal electron paramagnetic resonance (EPR) spectroscopy at 5 K. The photolyzed oxy-cobalt myoglobin exhibited an EPR spectrum consisting of two nonequivalent sets (species I and II) of the principal values and eigenvectors of the g tensors: g1I = 3.55, g2I = 3.47, and g3I = 2.26 for species I, and g1II = 2.04, g2II = 1.93, and g3II = 1.86 for species II, which resembled neither the deoxy nor the oxy form. Possible models of the photodissociated state of oxy-cobalt myoglobin are proposed by comparison with cobalt porphyrin complexes. The photolyzed product of nitric oxide-cobalt myoglobin exhibited new EPR signals at g = 4.3 and a very broad signal at around g = 2. The principal g values have been determined from the single-crystal EPR measurements: g1 = 4.39, g2 = 4.27, and g3 = 4.00. Analysis of another EPR signal around g = 2 was difficult due to its broadness. Magnetic interactions were observed. An isotropic EPR signal at g = 4.3 suggested a weakly spin-coupled system between cobaltous spin (S = 1/2 or 3/2) and nitric oxide spin (S = 1/2).

Electron Spin Resonance Spectroscopy↗

Imported mitochondrial proteins cytochrome b2 and cytochrome c1 are processed in two steps.

Cytochrome b2 of yeast is located in the space between the inner and outer mitochondrial membranes whereas cytochrome c1 is bound to the outer face of the mitochondrial inner membrane. Both proteins are made outside the mitochondria as larger precursors that are processed to their mature forms in two steps. In the first step, at least a segment of the precursor polypeptide chain penetrates into the mitochondrial matrix and is cleaved to an intermediate form by a matrix-localized soluble protease. This step requires an electrochemical gradient across the mitochondrial inner membrane. In the second step, the intermediate form is converted to the mature form. For cytochrome c1, this second step requires heme. Import of these two cytochromes thus involves a "detour" across the inner membrane.

Biological Transport↗

Studies on cobalt myoglobins and hemoglobins. The interaction of molecular oxygen with leghemoglobin.

Cobalt-substituted leghemoglobin (CoLb) was prepared from cobaltous protoporphyrin IX and apo-leghemoglobin a, and its functional and spectroscopic properties were examined. The oxygen affinity of CoLb was pH-dependent. The partial oxygen pressure at half-saturation was decreased from 14.3 torr at pH 8 to 3.5 Torr at pH 3.5 with a pK value of 5.8 at 15 degrees C. The oxygen association and dissociation rates were determined by the temperature jump-relaxation technique. The association rate was essentially pH-independent, and the relatively high oxygen affinity of CoLb was found to be due to the fast oxygen association rate in comparison with cobalt myoglobin. The oxygen dissociation rate was pH-dependent with a pK value of 5.7 at 15 degrees C, suggesting that the pH dependence of the oxygen dissociation rate is responsible for the pH-dependent change in the oxygen affinity of CoLb. The EPR spectrum of oxyCoLb exhibited a pH-dependent change with a pK value of 5.7 at 15 degrees C. The EPR spectrum at 77 K of oxyCoLb at neutral pH exhibited a small effect upon the replacement of H2O with D2O, but it was drastically altered in the acidic pH region. The deoxy EPR spectrum was pH-independent between pH 4 and 9. These observations indicate that in oxyCoLb, the bound oxygen is interacting with the distal amino acid group with a pK value of 5.7 and that this interaction is responsible for the increased oxygen affinity in the acidic pH region.

Cobalt↗

Single crystal EPR of myoglobin nitroxide. Freezing-induced reversible changes in the molecular orientation of the ligand.

Single crystals of myoglobin nitroxide (MbNO) are examined by the electron paramagnetic resonance spectroscopy at ambient and cryogenic temperatures for both the 14NO and 15NO derivatives. The principal values and the eigenvectors of the g tensor and the hyperfine coupling tensor are determined: g xx = 2.050, g yy = 2.022, and g zz = 1.993; A xi xi = 15.6, A zeta zeta = 21.4, and A eta eta = 26.7 G for the nitrogen in 15NO at ambient temperature. The Fe--N--O bond angle is calculated to be 153 degrees. This result is in good agreement with the x-ray structural result on the six-liganded model compound with the bent Fe--N--O configuration. The principal values and the eigenvectors of the g tensor and the hyperfine coupling tensor are also determined at 77 K for Mb15NO; gxx = 2.076, gyy = 1.979, and gzz = 2.002; A xi xi = 21, A zeta zeta = 24, and A eta eta = 27 G. The Fe--N--O bond angle is calculated to be 109 degrees. The hyperfine splittings attributed to N epsilon atom of proximal histidine are observed in the direction of the gzz at both temperatures. The drastic shift of the EPR spectrum of MbNO single crystal is observed below the freezing point of this crystal. It clearly demonstrates that the conformation of the bonding NO is drastically altered upon freezing. The temperature dependence of the EPR spectra of MbNO below the freezing point cannot be explained only by appropriate combinations of the higher temperature type and the lower temperature type and suggests the contribution from an unpaired electron with the iron dz2 and dyz (or dxz) orbitals. The present EPR results demonstrated that the changes in the molecular orientations are induced by freezing of the biological molecules without disorder of the crystal lattice.

Animals↗

Flash photolysis study of ligand binding by modified myoglobins at low temperatures.

The CO-binding kinetics of myoglobin containing proto-, meso- and deutero-hemes were studied by flash photolysis over the temperature range 50-300 K. Results recorded over a large dynamic range of time (microseconds to many seconds) reveal processes that are non-exponential in time and multiphasic. The data are explained by a model in which the CO molecule must surmount four barriers in migrating from the solvent to the heme iron. At least two of these barriers have heights that vary from one molecule to another. Varying the nature of the heme group affects mainly the innermost of these barriers and, to a lesser degree, the second-outermost barrier.

Binding Sites↗