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Biomedical subjects

Sushmita Mitra

Publications and source records attributed to Sushmita Mitra.

2 recordsLinked to original sources

Rough-fuzzy collaborative clustering.

In this study, we introduce a novel clustering architecture, in which several subsets of patterns can be processed together with an objective of finding a common structure. The structure revealed at the global level is determined by exchanging prototypes of the subsets of data and by moving prototypes of the corresponding clusters toward each other. Thereby, the required communication links are established at the level of cluster prototypes and partition matrices, without hampering the security concerns. A detailed clustering algorithm is developed by integrating the advantages of both fuzzy sets and rough sets, and a measure of quantitative analysis of the experimental results is provided for synthetic and real-world data.

Algorithms↗

Hidden Markov Models, grammars, and biology: a tutorial.

Biological sequences and structures have been modelled using various machine learning techniques and abstract mathematical concepts. This article surveys methods using Hidden Markov Model and functional grammars for this purpose. We provide a formal introduction to Hidden Markov Model and grammars, stressing on a comprehensive mathematical description of the methods and their natural continuity. The basic algorithms and their application to analyzing biological sequences and modelling structures of bio-molecules like proteins and nucleic acids are discussed. A comparison of the different approaches is discussed, and possible areas of work and problems are highlighted. Related databases and softwares, available on the internet, are also mentioned.

Algorithms↗