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Biomedical subjects

Shubin Liu

Publications and source records attributed to Shubin Liu.

5 recordsLinked to original sources

Approximate scaling properties of the density functional theory Tc for atoms.

Revealed are scaling properties for T(c)[rho], the kinetic-energy component of the correlation energy density functional for atoms, in terms of the total number of electrons N, the nuclear charge Z, and the total electron density at the nucleus rho(0). T(c) scales well as Nrho(0)/Z(8/3) for both neutral atoms up to Z=18 and the four-electron Be-like cationic species. A model is given that describes these findings, involving a density encoding the cusp information and an effective potential going like r(-4/3).

Journal Article↗

Towards understanding performance differences between approximate density functionals for spin states of iron complexes.

Density functional theory has been widely used to investigate the structural and electronic properties of heme-containing proteins such as cytochrome P450. Nevertheless, recent studies have shown that approximate exchange-correlation energy density functionals can incorrectly predict the stability order of spin states in, for instance, iron-containing pyridine and imidazole systems. This raises questions about the validity of earlier theoretical studies. In this work, we systematically investigate a few typical inorganic and organic iron-containing complexes and try to understand the performance difference of various density functionals. Two oxidation states of iron, Fe(II) and Fe(III), with different spin states and both adiabatic and vertical structures are considered. A different description of the outmost molecular orbital is found to play the crucial role. Local density and generalized gradient based functionals bias the lower spin state and produce a more localized frontier orbital that is higher in energy than the hybrid functionals. Energy component analysis has been performed, together with comparison of numerous structural and electronic properties. Implications of the present work to the theoretical study of heme-containing biological molecules and other spin-related systems are discussed.

Journal Article↗

Face-integrated Fukui function: understanding wettability anisotropy of molecular crystals from density functional theory.

Wettability is one of the anisotropic surface properties of molecular crystals that exhibit the structural variance of chemical moieties on various growth faces. The divergence in liquid-solid interactions at different faces is thought to be related to the inherent responding capacity or sensitivity of a solid surface to the perturbation in electronic structures and atomic positions as a result of the contact by a liquid. Since the Fukui function, according to density functional theory (DFT), is a local function for describing such sensitivity to the structural perturbation and is directly related to local softness, it has been proposed and tested to use an integrated Fukui function over a crystallographic plane for describing the anisotropy of solid-liquid interactions. It is found that the contact angle of a polar solvent, such as water, on a crystal surface shows an intimate connection to the integrated Fukui functions of the surface, illustrating an extension of Pearson's HSAB (hard and soft acids and bases) to crystal systems. The concept of face-integrated Fukui function and the approach to apply the HSAB with the DFT-based concepts may provide a powerful means for describing anisotropic properties, including wettability of organic crystals.

Anisotropy↗

Adsorption isotherms on nicotinamide-imprinted polymer stationary phase.

The molecular-imprinted technique is applied for the preparation of a polymer selector by using methacrylic acid as functional monomer, ethyleneglycol dimethacrylate as the cross-linker, 2,2'-azobisisobutyronitrile as the initiator, and nicotinamide as the template. The adsorption isotherms of nicotinamide and nicotinic acid and the competitive adsorption isotherms of nicotinamide and nicotinic acid on the imprinted stationary phase are determined using rectangular pulse frontal analysis and static method. Aqueous solution is used as the mobile phase in frontal analysis. It is found that the adsorption data fit well to both Langmuir and Freundlich isotherm models.

Adsorption↗

[Fast separation of nicotinamide and nicotinic acid with molecularly imprinted monolithic column].

Nicotinamide has been employed as template for the preparation of molecularly imprinted monolithic polymer (MIP) which was used as liquid chromatographic stationary phase. It showed that the nicotinamide-MIP monolithic column was capable of recognizing the difference between nicotinamide and nicotinic acid, while the non-imprinted polymer had no such ability. The content of organic solvent, flow rate and pH of the mobile phase were investigated in the experiments. The following high performance liquid chromatographic conditions were selected: column, 50 mm x 4.6 mm i.d.; mobile phase, water; flow rate, 7.0 mL/min; experiment temperature, room temperature. The resolution between nicotinamide and nicotinic acid was 1.8. The results showed that the two compounds could be separated by the nicotinamide-MIP monolithic column. The column is very useful for the enrichment and detection of nicotinamide in body fluids.

Chromatography, High Pressure Liquid↗