The Novel HLA-DPB1*1650:01 N Allele Was Identified by Next-Generation Sequencing.
HLA-DPB1*1650:01 N differs from HLA-DPB1*135:01:01:01 in exon 2 codon 62 (CAG>TAG), introducing a premature stop codon.
Humans↗
Biomedical subjects
Seunghwan Kim
Publications and source records attributed to Seunghwan Kim.
Self-organized criticality and scale-free properties in emergent functional neural networks.
Recent studies on complex systems have shown that the synchronization of oscillators, including neuronal ones, is faster, stronger, and more efficient in small-world networks than in regular or random networks. We show that the functional structures in the brain can be self-organized to both small-world and scale-free networks by synaptic reorganization via spike timing dependent synaptic plasticity instead of conventional Hebbian learning rules. We show that the balance between the excitatory and the inhibitory synaptic inputs is critical in the formation of the functional structure, which is found to lie in a self-organized critical state.
Action Potentials↗
Understanding volatility correlation behavior with a magnitude cross-correlation function.
We propose an approach for analyzing the basic relation between correlation properties of the original signal and its magnitude fluctuations by decomposing the original signal into its positive and negative fluctuation components. We use this relation to understand the following phenomenon found in many naturally occurring time series: the magnitude of the signal exhibits long-range correlation, whereas the original signal is short-range correlated. The applications of our approach to heart rate variability signals and high-frequency foreign exchange rates reveal that the difference between the correlation properties of the original signal and its magnitude fluctuations is induced by the time organization structure of the correlation function between the magnitude fluctuations of positive and negative components. We show that this correlation function can be described well by a stretched-exponential function and is related to the nonlinearity and the multifractal structure of the signals.
Journal Article↗
Bifurcation analysis of mode-locking structure in a Hodgkin-Huxley neuron under sinusoidal current.
Nervous systems under periodic stimuli display rich dynamical states including mode-locking and chaotic responses, which have been a subject of intense studies in neurodynamics. The bifurcation structure of the Hodgkin-Huxley neuron under sinusoidal stimulus is studied in detail. The mechanisms of the firing onset and rich firing dynamics are studied with the help of the codimension-2 bifurcations, which play the role of the organizing center for myriads of saddle-node, period-doubling, and inverse-flip bifurcations forming the boundaries of the complex mode-locking structure. This study provides a useful insight into the organization of similar bifurcation structures in excitable systems such as neurons under periodic forcing.
Action Potentials↗
Classification of epilepsy types through global network analysis of scalp electroencephalograms.
Epilepsy is a dynamic disease in which self-organization and emergent structures occur dynamically at multiple levels of neuronal integration. Therefore, the transient relationship within multichannel electroencephalograms (EEGs) is crucial for understanding epileptic processes. In this paper, we show that the global relationship within multichannel EEGs provides us with more useful information in classifying two different epilepsy types than pairwise relationships such as cross correlation. To demonstrate this, we determine the global network structure within channels of the scalp EEG based on the minimum spanning tree method. The topological dissimilarity of the network structures from different types of temporal lobe epilepsy is described in the form of the divergence rate and is computed for 11 patients with left (LTLE) and right temporal lobe epilepsy (RTLE). We find that patients with LTLE and RTLE exhibit different large scale network structures, which emerge at the epoch immediately before the seizure onset, not in the preceding epochs. Our results suggest that patients with the two different epilepsy types display distinct large scale dynamical networks with characteristic epileptic network structures.
Artificial Intelligence↗
Bona fide stochastic resonance and multimodality in the stochastic Hodgkin-Huxley neuron.
The phenomena of stochastic resonance (SR) has attracted much attention in the studies of the excitable systems, in particular, the nervous systems under noise. Recently, an alternative SR condition, called the bona fide SR, was proposed for the bistable system under noise, based on the notion of the residence time distribution. As the forcing frequency increases, there exists an optimal resonant frequency. We study the SR in a stochastic Hodgkin-Huxley neuron, which has an inherent natural frequency in addition to the stochastic time scale. We have observed two resonant conditions; one between periodic forcing and natural frequencies, and the other between the periodic forcing and the stochastic frequencies. These resonance conditions show the bona fide stochastic resonance with multimodality. For comparison, we have studied the bona fide SR in the stochastic FitzHugh-Nagumo neuron, where, the multimodality is not observed. The differences in the resonance structure of two neuron models are understood in terms of differences in the phase portraits.
Action Potentials↗
Event and time-scale characteristics of heart-rate dynamics.
The cardiac system shows various scale dynamic activities from secondly to yearly. Therefore multiple time-scale characteristics of heart dynamics have received much attention for understanding and distinguishing healthy and pathological cardiac systems. In this paper we expand the multiple time-scale analysis into event and time scales to investigate scale characteristics in healthy and pathologic cardiac systems. To do this, we define a measure based on symbolic dynamics, which calculates complexity at each time and event scale, called the unit time block entropy (UTBE). This measure allows a reliable comparison of experimental data through matching the number of words and the total measurement time at the same time for all RR interval sequences which are composed of the time durations between consecutive R waves of electrocardiograms. We apply the UTBE to the healthy heart-rate (HR) group and pathological HR groups and find that the RR interval acceleration is more effective than the RR interval in distinguishing each group. And we also find that the normal and pathological HR groups are clearly distinguished in some specific event and time-scale regions.
Algorithms↗
Perfusion abnormality of the caudate nucleus in patients with paroxysmal kinesigenic choreoathetosis.
PURPOSE: Previous cerebral blood flow and glucose metabolism studies suggest that the basal ganglia or thalamus is involved in the pathogenesis of paroxysmal kinesigenic choreoathetosis (PKC). However, the underlying cerebral abnormalities in idiopathic PKC have not been elucidated. To localise cerebral perfusion abnormalities in PKC, we performed interictal brain perfusion 99mTc-ethylcysteinate dimer (ECD) single-photon emission computed tomography (SPECT) in PKC patients and in normal controls. METHODS: Sixteen patients with idiopathic PKC and 18 age- and sex-matched normal controls were included. The patients were de novo diagnosed as having PKC, or had not taken medication for at least 3 months; none of them had structural abnormalities on MRI. Patients had a history of PKC attacks of a duration not exceeding 5 min and starting either on one side or on both sides of the body. These attacks were always induced by a sudden initiation of voluntary movement. PKC attacks were recorded in a hospital after being induced by neurology staff in 13 of the 16 patients. Interictal brain perfusion 99mTc-ECD SPECT was performed in all 16 patients and 18 normal controls. Differences between the cerebral perfusion in the PKC group and the normal control group were tested by statistical parametric mapping. Student's t test was used for inter-group comparisons. RESULTS: Compared with normal controls, patients with idiopathic PKC showed interictal hypoperfusion in the posterior regions of the bilateral caudate nuclei (false discovery rate-corrected P<0.001 with a small volume correction). CONCLUSION: This study showed that cerebral perfusion abnormality of bilateral caudate nuclei is present in idiopathic PKC.
Adolescent↗
Postoperative alteration of cerebral glucose metabolism in mesial temporal lobe epilepsy.
To investigate postoperative changes in the cerebral glucose metabolism of patients with mesial temporal lobe epilepsy (MTLE), statistical parametric mapping (SPM) analysis was performed on pre- and postoperative (18)F-fluorodeoxyglucose PET (FDG-PET) images. We included 28 patients with MTLE who had undergone surgery and had been seizure-free postoperatively (16 had left MTLE and 12 right MTLE). All patients showed hippocampal sclerosis by pathology or brain MRI. FDG-PET images of the 12 right temporal lobe epilepsy patients were reversed to lateralize the epileptogenic zone to the left side in all patients. Application of the paired t-test in SPM to pre- and postoperative FDG-PETs showed that postoperative glucose metabolism decreased in the caudate nucleus, the pulvinar of the thalamus, fusiform gyrus, lingual gyrus and the posterior region of the insular cortex in the hemisphere ipsilateral to resection, whereas postoperative glucose metabolism increased in the anterior region of the insular cortex, temporal stem white matter, midbrain, inferior precentral gyrus, anterior cingulate gyrus and supramarginal gyrus in the hemisphere ipsilateral to resection. No significant postsurgical changes in cerebral glucose metabolism occurred in the contralateral hemisphere. Subtraction between pre- and postoperative FDG-PET images in individual patients produced similar findings to the SPM results, and additionally showed that postoperative glucose metabolism increased in the anterior thalamus in 12/28 patients (42.8%). SISCOM (subtraction ictal-interictal SPECT co-registered to MRI) performed in 17 patients showed ictal hyperperfusion in the ipsilateral temporal lobe, including the temporal stem white matter, midbrain, insular cortex and cingulate gyrus, bilateral basal ganglia and thalami, and multiple small regions in the frontoparietal lobes during seizures. This study suggests that brain regions showing a postoperative increase in glucose metabolism appear to represent the propagation pathways of ictal and interictal epileptic discharges in MTLE, whereas the postoperative decrease in glucose metabolism may be related to a permanent loss of afferents from resected anterior-mesial temporal structures.
Adolescent↗
Different ocular dominance map formation influenced by orientation preference columns in visual cortices.
In animal experiments, the observed orientation preference and ocular dominance columns in the visual cortex of the brain show various pattern types. Here, we show that the different visual map formations in various species are due to the crossover behavior in anisotropic systems composed of orientational and scalar components such as easy-plane Heisenberg models. We predict the transition boundary between different pattern types with the anisotropy as a main bifurcation parameter, which is consistent with experimental observations.
Animals↗
Isolation and characterization of diazotrophic growth promoting bacteria from rhizosphere of agricultural crops of Korea.
Free-living nitrogen fixing bacteria were isolated from rhizosphere of seven different plant namely sesame, maize, wheat, soybean, lettuce, pepper and rice grown in Chungbuk Province, Korea. Five isolates with nitrogenase activity above 150nmol(-1) mg(-1) protein were identified based on, phenotypic and 16S rDNA sequences analysis. The strains were identified as Stenotrophomonas maltophilia (PM-1, PM-26), Bacillus fusiformis (PM-5, PM-24) and Pseudomonas fluorescens (PM-13), respectively. All the isolates produced indole-3-acetic acid (IAA), in the presence of tryptophan, ranging from 100.4 microg ml(-1) (PM-13) to 255 microg ml(-1) (PM-24). The isolate PM-24 (Bacillus fusiformis) exhibiting highest nitrogenase activity (3677.81 nmol h(-1) mg(-1) protein) and IAA production (255microg ml(-1)) has a promising potential for developing as a plant growth promoting rhizobacteria.
Acetylene↗
Wheat root colonization and nitrogenase activity by Azospirillum isolates from crop plants in Korea.
Nitrogen-fixing bacteria were isolated from the rhizosphere of different crops of Korea. A total of 16 isolates were selected and characterized. Thirteen of the isolates produced characteristics similar to those of the reference strains of Azospirillum, and the remaining 3 isolates were found to be Enterobacter spp. The isolates could be categorized into 3 groups based on their ARDRA patterns, and the first 2 groups comprised Azospirillum brasilense and Azospirillum lipoferum. The acetylene reduction activity (ARA) of these isolates was determined for free cultures and in association with wheat roots. There was no correlation between pure culture and plant-associated nitrogenase activity of the different strains. The isolates that showed higher nitrogenase activities in association with wheat roots in each group were selected and sequenced. Isolates of Azospirillum brasilense CW301, Azospirillum brasilense CW903, and Azospirillum lipoferum CW1503 were selected to study colonization in association with wheat roots. We observed higher expression of beta-galactosidase activity in A. brasilense strains than in A. lipoferum strains, which could be attributed to their higher population in association with wheat roots. All strains tested colonized and exhibited the strongest beta-galactosidase activity at the sites of lateral roots emergence.
Acetylene↗
Modeling of diffuse-diffuse photon coupling via a nonscattering region: a comparative study.
It is well established that diffusion approximation is valid for light propagation in highly scattering media, but it breaks down in nonscattering regions. The previous methods that manipulate nonscattering regions are essentially boundary-to-boundary coupling (BBC) methods through a nonscattering void region based on the radiosity theory. We present a boundary-to-interior coupling (BIC) method. BIC is based on the fact that the collimated pencil beam incident on the medium can be replaced by an isotropic point source positioned at one reduced scattering length inside the medium from an illuminated point. A similar replacement is possible for the nondiffuse lights that enter the diffuse medium through the void, and it is formulated as the BIC method. We implemented both coupling methods using the finite element method (FEM) and tested for the circle with a void gap and for a four-layer adult head model. For mean time of flight, the BIC shows better agreement with Monte Carlo (MC) simulation results than BBC. For intensity, BIC shows a comparable match with MC data compared with that of BBC. The effect of absorption of the clear layer in the adult head model was investigated. Both mean time and intensity decrease as absorption of the clear layer increases.
Computer Simulation↗
Orientation tuning and synchronization in the hypercolumn model.
The orientation selectivity in the firing rate of neurons is one of the most well-known properties of neurons in the primary visual cortex. To understand the dynamical mechanism of the orientation tuning, we introduce a biologically plausible network for a hypercolumn and investigate dynamical responses of its columnar activities. Numerical simulations show that the spike activities between excitatory cells in the same column exhibit strong synchronization and sharp orientation selectivity. The tuning curves for the synchronized activities also show orientation selectivity similar to those for the firing rate. The comparison between the two tuning curves for the firing rate and the synchronized activities suggests that the orientation selectivity is strongly correlated with the synchronized activities. We find from the analysis of columnar activities that the orientation selectivity depends strongly upon the inhibitory coupling strength and the synchronization upon the excitatory coupling strength. In particular, we find that at appropriate coupling parameters both sharp orientation selectivity and maximal synchronization can be achieved. This suggests the importance of the balance between the excitatory coupling and the inhibitory coupling in the primary visual cortex for visual information processing.
Action Potentials↗
Understanding visual map formation through vortex dynamics of spin Hamiltonian models.
The pattern formation in orientation and ocular dominance columns is one of the most investigated problems in the brain. From a known cortical structure, we build spinlike Hamiltonian models with long-range interactions of the Mexican hat type. These Hamiltonian models allow a coherent interpretation of the diverse phenomena in the visual map formation with the help of relaxation dynamics of spin systems. In particular, we explain various phenomena of self-organization in orientation and ocular dominance map formation including the pinwheel annihilation and its dependency on the columnar wave vector and boundary conditions.
Brain↗
The potential contribution of a computer-aided detection system for lung nodule detection in multidetector row computed tomography.
RATIONALE AND OBJECTIVES: We sought to evaluate the potential benefits of a computer-aided detection (CAD) system for detecting lung nodules in multidetector row CT (MDCT) scans. METHODS: A CAD system was developed for detecting lung nodules on MDCT scans and was applied to the data obtained from 15 patients. Two chest radiologists in consensus established the reference standard. The nodules were categorized according to their size and their relationship to the surrounding structures (nodule type). The differences in the sensitivities between an experienced chest radiologist and a CAD system without user interaction were evaluated using a chi2 analysis. The differences in the sensitivities also were compared in terms of the nodule size and the nodule type. RESULTS: A total of 309 nodules were identified as the reference standard. The sensitivity of a CAD system (81%) was not significantly different from that of a radiologist (85%; P > 0.05). The sensitivities of the CAD system for detecting nodules < or = 5 mm in diameter as well as detecting isolated nodules were higher than those of a radiologist (83% vs. 75%, P > 0.05; 93% vs. 76%, P < 0.001). The sensitivities of a radiologist for detecting nodules >5 mm and the nodules attached to other structures were higher than those of a CAD system (98% vs. 79%, P < 0.001; 91% vs. 71%, P < 0.001). There were 28.8 false-positive results of CAD per CT study. CONCLUSION: The CAD system developed in this study performed the nodule detection task in different ways to that of a radiologist in terms of the nodule size and the nodule type, which suggests that the CAD system can play a complementary role to a radiologist in detecting nodules from large CT data sets.
Adult↗
Regional cerebral hyperperfusion with ictal dystonic posturing: ictal-interictal SPECT subtraction.
PURPOSE: Ictal-interictal single-photon emission computed tomography (SPECT) subtraction was performed to find brain structures related to ictal dystonic posturing (DP) in patients with temporal lobe epilepsy (TLE). METHODS: Thirty-two patients with mesial TLE who had ictal and interictal SPECTs were included. They were divided into two groups; DP group with ictal dystonia during ictal SPECT (n = 15) and Non-DP group without ictal DP (n = 17). Ictal-interictal SPECT subtraction was performed, and then subtracted SPECT was coregistered with brain spoiled gradient recalled (SPGR) magnetic resonance imaging (MRI). The ictal hyperperfusion on subtracted SPECT was analyzed in basal ganglia, frontal cortex, thalamus, temporal lobe, and insular cortex. RESULTS: The incidences of ictal hyperperfusion on brain regions in DP versus Non-DP groups were 80.0% (12 of 15 patients) versus none (0 of 17), p = 0.001, chi2, in caudate nucleus; 93.3% (14 of 15) versus 47.0% (eight of 17), p = 0.005, in putamen; and 80.0% (12 of 15) versus 41.2% (seven of 17), p = 0.026, in thalamus. No significant difference of ictal hyperperfusion was found in globus pallidus, temporal lobes, insular and frontal cortices between DP and Non-DP groups. DP patients showed an earlier age at seizure onset [8.6 years (DP) vs. 15.7 years (Non-DP) (p = 0.015)] and a longer duration of seizure history [19.0 years (DP) vs. 11.9 years (Non-DP) (p = 0.015)]. CONCLUSIONS: Caudate nucleus, putamen, and thalamus were significantly related to the ictal DP during TLE seizures. Our study showed first an active involvement of the caudate nucleus in the generation of ictal DP.
Basal Ganglia↗
Diffuse-diffuse photon coupling via nonscattering void in the presence of refractive index mismatch on the void boundary.
It is well established that the diffusion approximation (DA) is valid for light propagation in highly scattering media, but it breaks down in nonscattering void regions. The methods that handle the void with refractive index matched boundary were previously developed. For the void with refractive index mismatched boundary, no theory is yet available. We derived the finite element method that can handle the void problem with refractive index mismatch on its boundary. The method uses the ray tracing to account for the multiple reflections of rays within the void due to refractive index mismatch on the void boundary. We applied the method to the four-layer adult head model and the good agreements with Monte Carlo simulation results were found in the mean time of flight data.
Algorithms↗