Biomedical subjects

Samartha G Anekal

Publications and source records attributed to Samartha G Anekal.

5 recordsLinked to original sources

PubMed2006

Diffusing colloidal probes of protein and synthetic macromolecule interactions.

A new approach is described for measuring kT and nanometer scale protein-protein and protein-synthetic macromolecule interactions. The utility of this method is demonstrated by measuring interactions of bovine serum albumin (BSA) and copolymers with exposed polyethyleneoxide (PEO) moieties adsorbed to hydrophobically modified colloids and surfaces. Total internal reflection and video microscopy are used to track three-dimensional trajectories of many single diffusing colloids that are analyzed to yield interaction potentials, mean-square displacements, and colloid-surface association lifetimes. A criterion is developed to identify colloids as being levitated, associated, or deposited based on energetic, spatial, statistical, and temporal information. Whereas levitation and deposition occur for strongly repulsive or attractive potentials, association is exponentially sensitive to weak interactions influenced by adsorbed layer architectures and surface heterogeneity. Systematic experiments reveal how BSA orientation and PEO molecular weight produce adsorbed layers that either conceal or expose substrate heterogeneities to generate a continuum of colloid-surface association lifetimes. These measurements provide simultaneous access to a broad range of information that consistently indicates purely repulsive BSA and PEO interactions and a role for surface heterogeneity in colloid-surface association. The demonstrated capability to measure nonspecific protein interactions provides a basis for future measurements of specific protein interactions.

Colloids↗

PubMed2006

Mapping patterned potential energy landscapes with diffusing colloidal probes.

We report a new method for mapping patterned surfaces based on monitoring the interactions of freely diffusing colloidal probes with pattern features to generate measured potential energy landscapes. Evanescent wave scattering and video microscopy are used to track 3D center positions of nominal 2 microm silica colloids as they diffuse over 5-20-nm-thick patterned gold films. An analysis of ensemble-averaged particle height histograms on different pattern features using Boltzmann's equation produces local electrostatic and van der Waals potentials in good agreement with independent measurements and predictions. Absolute separation is obtained from theoretical fits to measured potential-energy profiles and direct measurement by depositing silica colloids onto gold surfaces via electrophoretic deposition. As colloidal probe and pattern feature dimensions become comparable, potential energy profiles suffer some distortion due to the increased probability of probes sampling pattern feature edges. An analysis of interfacial colloidal probe diffusion in conjunction with potential energy measurements demonstrates a consistent interpretation of dissipative and conservative forces in these measurements. Future extensions of this work should produce similar approaches for interrogating physical, chemical, and biomolecular heterogeneous/patterned surfaces and structures with diffusing colloidal probes.

Colloids↗

PubMed2006

Self-diffusion in submonolayer colloidal fluids near a wall.

Theoretical expressions are developed to describe self-diffusion in submonolayer colloidal fluids that require only equilibrium structural information as input. Submonolayer colloidal fluids are defined for the purpose of this work to occur when gravity confines colloids near a planar wall surface so that they behave thermodynamically as two dimensional fluids. Expressions for self-diffusion are generalized to consider different colloid and surface interaction potentials and interfacial concentrations from infinite dilution to near fluid-solid coexistence. The accuracy of these expressions is demonstrated by comparing self-diffusion coefficients predicted from Monte Carlo simulated equilibrium particle configurations with standard measures of self-diffusion evaluated from Stokesian Dynamics simulated particle trajectories. It is shown that diffusivities predicted for simulated equilibrium fluid structures via multibody hydrodynamic resistance tensors and particle distribution functions display excellent agreement with values computed from mean squared displacements and autocorrelation functions of simulated tracer particles. Results are obtained for short and long time self-diffusion both parallel and normal to underlying planar wall surfaces in fluids composed of particles having either repulsive electrostatic or attractive van der Waals interactions. The demonstrated accuracy of these expressions for self-diffusion should allow their direct application to experiments involving submonolayer colloidal fluids having a range of interaction potentials and interfacial concentrations.

Journal Article↗

PubMed2006

Dynamic signature for the equilibrium percolation threshold of attractive colloidal fluids.

Short-time self-diffusivities, D(S)S, are computed for attractive colloidal fluids with van der Waals potentials to identify their percolation threshold and a previously unexplained dynamic transition. Our results show a discontinuous change in the slope of D(S)S vs temperature as the percolation threshold is crossed. Because D(S)S depends only on multibody hydrodynamic interactions, the percolation threshold of attractive colloidal fluids is shown to correspond to a transition in a dynamic property consistent with the linear viscoelastic measurements of Woutersen et al., J. Chem. Phys. 101, 542 (1994).

Journal Article↗

PubMed2005

Interpretation of conservative forces from Stokesian dynamic simulations of interfacial and confined colloids.

This paper presents Stokesian dynamics simulations of experiments involving one or two charged colloids near either a single charged wall or confined between parallel charged walls. Equilibrium particle-particle and particle-wall interactions are interpreted from dynamic particle trajectories in simulations involving (1) a single particle levitated above a wall, (2) two particles below a wall, and (3) two particles confined between two parallel walls. By specifying only repulsive electrostatic Derjaguin-Landau-Verwey-Overbeek (DLVO) potentials and including multibody hydrodynamics, we successfully recover expected potentials in some cases, while anomalous attraction is observed in other cases. Attraction inferred in the latter simulations displays quantitative agreement with literature measurements when particle dynamics are interpreted using reported analyses. Because anomalous attraction is reproduced in simulations using only electrostatic repulsive DLVO potentials, our results reveal the one-dimensional analyses to be invalid for configurations that are inherently multidimensional via multibody hydrodynamics. Parameters related to experimental sampling of particle dynamics are also found to be critical for obtaining accurate potentials. We explain the anomalous attraction in each experiment using effective potentials, which can be employed in an a priori fashion to assist the confident design of future experiments involving interfacial and confined colloids. Ultimately, our findings reveal the importance of dimensionality and multibody hydrodynamics for understanding nonequilibrium dynamics of colloids near surfaces.

Journal Article↗