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Biomedical subjects

S V Nedea

Publications and source records attributed to S V Nedea.

5 recordsLinked to original sources

Hybrid method coupling molecular dynamics and Monte Carlo simulations to study the properties of gases in microchannels and nanochannels.

We combine molecular dynamics (MD) and Monte Carlo (MC) simulations to study the properties of gas molecules confined between two hard walls of a microchannel or nanochannel. The coupling between MD and MC simulations is introduced by performing MD near the boundaries for accuracy and MC in the bulk because of the low computational cost. We characterize the influence of different densities and molecule sizes on the equilibrium properties of the gas in the microchannel. The effect of the particle size on the simulation results is very small in the case of a dilute gas and increases with the density. The hybrid MD-MC simulation method is validated by comparing the results for density and temperature profiles with those of pure MD and pure MC simulations. These results compare well for pure MD and pure MC, as well as hybrid MD-MC, both in the bulk and near the boundaries, when hard-sphere interactions are used. When Lennard-Jones potentials are used to accurately model the interactions between the gas and wall molecules instead, the results of pure MD simulations differ significantly from the pure MC simulations near the boundaries, but the results of the hybrid method compare well with the pure MD results near the wall, and with the pure MC and pure MD results in the middle of the channel. The hybrid method also very accurately simulates the interface between the MD and MC simulation domains. Comparisons between MD, MC, and hybrid MD-MC computational costs are outlined. The speedup when using 50% of the domain for MD simulations and 50% for MC simulations is very small compared to pure MD simulations times, but this speedup increases drastically for more realistic situations where the region near the wall is small compared to the bulk region.

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Molecular dynamics study of the influence of wall-gas interactions on heat flow in nanochannels.

Especially at the nanometer scale interfaces play an important role. The effect of the wettability on the solid-liquid interface has already been studied with molecular dynamics. In this paper we study the dependence of wetting on the solid-gas interface for different density gases and investigate the influence of wetting on the heat transport properties over such an interface using molecular dynamics. Subsequently we show how the flow profile of a gas flowing along a surface also depends on this wettability. These simulations show that wettability increases the conductivity of a solid to a stationary gas and decreases the flow velocity near the interface for a gas flow. These two effects influence the cooling of a solid achieved by a cold gas flowing along its surface in opposite ways. However, we show that a higher wettability has a positive net effect on the cooling, explaining experimental results that showed an increased heat cooling effect of hydrophilic over hydrophobic microchannels.

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Infinitely fast diffusion in single-file systems.

We have used dynamic Monte Carlo(DMC) methods and analytical techniques to analyze single-file systems for which diffusion is infinitely fast. We have simplified the master equation removing the fast reactions, and we have introduced a DMC algorithm for infinitely fast diffusion. The DMC method for fast diffusion give similar results as the standard DMC with high diffusion rates. We have investigated the influence of characteristic parameters, such as pipe length, adsorption, desorption, and conversion rate constants on the steady-state properties of single-file systems with a reaction, looking at cases when all the sites are reactive and when only some of them are reactive. We find that the effect of fast diffusion on single-file properties of the system is absent even when diffusion is infinitely fast. Diffusion is not important in these systems. Smaller systems are less reactive and the occupancy profiles for infinitely long systems show an exponential behavior.

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Analytical results for the reactivity of a single-file system.

We derive analytical expressions for the reactivity of a single-file system with fast diffusion and particles entering and leaving the system at one end. If the conversion reaction is fast, then the reactivity depends only very weakly on the system size, and the conversion is about 100%. If the reaction is slow, then the reactivity becomes proportional to the system size, the loading, and the reaction rate constant. If the system size increases the reactivity goes to the geometric mean of the reaction rate constant and the rate of particles entering and leaving the system. For large systems, the number of unconverted particles decreases exponentially with distance from the open end.

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Transient behavior in single-file systems.

We have used Monte Carlo methods and analytical techniques to investigate the influence of the characteristics, such as pipe length, diffusion, adsorption, desorption, and reaction rates on the transient properties of single-file systems. The transient or the relaxation regime is the period in which the system is evolving to equilibrium. We have studied the system when all the sites are reactive and also when only some of them are reactive. Comparisons between mean-field predictions, cluster approximation predictions, and Monte Carlo simulations for the relaxation time of the system are shown. We outline the cases where the mean-field analysis gives good results compared to dynamic Monte Carlo results. For some specific cases we can analytically derive the relaxation time. Occupancy profiles for different distributions of the sites both for the mean field and simulations are compared. Different results for slow and fast reaction systems and different distributions of reactive sites are discussed.

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