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Biomedical subjects

S Panyim

Publications and source records attributed to S Panyim.

At least 55 records · Page 3Linked to original sources

Improved resolution and sensitivity of human DNA fingerprinting by specific-primed labelling of M13 DNA.

A method to label M13 DNA probe by primer extension using a specific oligonucleotide primer is described. The method specifically labels the two 15-bp repeats in M13 DNA which hybridize to target DNA giving rise to DNA fingerprinting patterns. The M13 probe labelled by this method gave superior DNA fingerprinting patterns that that labelled by random primers. As little as 0.25 microgram of target DNA was sufficient for DNA fingerprinting. Non-isotopic labelling by the specific primer also showed improved DNA fingerprinting pattern. The results demonstrate the methodology to improve DNA fingerprinting based on M13 DNA probe.

Base Sequence↗

Isolation and characterization of Opisthorchis viverrini specific DNA probe.

An Opisthorchis viverrini specific repetitive DNA fragment was isolated from the O. viverrini genome. The cloned fragment, herein designated pOV-A6, contained tandemly repeated 334 bp O. viverrini DNA and has the potential to be a highly specific and sensitive DNA probe. Radioactively labelled pOV-A6 could detect as little as 25 pg of its own genomic DNA and five purified eggs by dot-blot hybridization. The presence of 50 O. viverrini eggs could be readily detected in samples containing faecal materials. The probe was highly specific for O. viverrini DNA and did not cross hybridize with DNAs prepared from related and unrelated parasites, enteric bacteria and a number of definitive and intermediate hosts. The probe has potential for screening a large number of samples and could be readily applied in epidemiological studies.

Animals↗

Population genetic analysis of host seeking and resting behaviors in the malaria vector, Anopheles balabacensis (Diptera: Culicidae).

During the intermonsoon period from mid-September to mid-October 1986, wild-caught Anopheles balabacensis Baisas females were marked and released in a host-choice experiment. Association between capture and recapture of marked mosquitoes from human and bovid hosts and blood meal host identification of recaptured females were determined on a daily basis. Although the mark-recapture and blood meal data indicated behavioral heterogeneity between buffalo and human biters, restriction endonuclease fragment length polymorphism analysis revealed no differences in repeat sequence profiles. Doubly-marked recaptures strongly indicated a "learning" component involved in a separate host preference experiment. In a "habitat loyalty" experiment conducted in January 1987, females of An. balabacensis preferentially returned to the resting sites (indoor surfaces and exit traps) where they were first caught. Of nine isozyme loci found to be polymorphic, the genotypic frequencies of Esterase-3 and Isocitrate dehydrogenase-3 were different in "faithfully" endophilic and exophilic subpopulations. Genetic heterozygosity, as determined by polyacrylamide gel electrophoresis, was greater in exophilic than endophilic population components. These results confirm that genetic and learning components can significantly influence house resting and host seeking behavior and may contribute to local epidemiological patterns of malaria transmission observed in Sabah, Malaysia.

Animals↗

Detection of Opisthorchis viverrini by monoclonal antibody-based ELISA and DNA hybridization.

Monoclonal antibody-based enzyme-linked immunosorbent assay and DNA hybridization techniques were developed and evaluated for their potential in the detection of Opisthorchis viverrini infection in humans. A mixture of three IgG1 monoclonal antibodies (MAb) specific for the 89 kDa metabolic product of O. viverrini was captured on a microtiter plate by rabbit anti-mouse IgG and used in a sandwich ELISA for the detection of parasite antigen. The 89 kD component bound to the MAb was detected with biotinylated rabbit IgG antibody to O. viverrini metabolic products. As little as 0.05-0.1 ng of the antigen could be detected by this technique. A specific O. viverrini DNA probe constructed from a repetitive DNA segment containing 340 base pairs was used in a dot blot hybridization for the detection of parasite DNA. The labeled probe constructed as such could detect DNA released from as few as five O. viverrini eggs. Both methods were specific for O. viverrini and their sensitivity was comparable with that of the classical parasitological technic.

Animals↗

Specific DNA probe for the sensitive detection of Trypanosoma evansi.

Trypanosoma evansi is the parasitic protozoon that causes "Surra", a wasting disease of domestic animals. Detection of T. evansi plays an important role in epidemiology and animal health. DNA probes were constructed from T. evansi genomic DNA and kinetoplast DNA for sensitive detection of the parasite in infected blood. A 6.5 kb DNA insert of pMUT ec6 plasmid derived from the genomic DNA of T. evansi Npl isolate, selected from 575 recombinant E. coli exhibited the strongest nucleic acid hybridization signal to the T. evansi DNA. Using as the DNA probe, pMUT ec6 could detect as little as 60 pg T. evansi DNA and it did not hybridize to the DNA of cattle, waterbuffalo and two related blood parasites. A simple detection procedure by spotting 10 microliters infected blood onto nylon membrane could sense as little as 1000 parasites. The kinetoplast DNA was cloned in E. coli and found to show a comparable sensitivity to that of the pMUT ec6. However, the kinetoplast DNA exhibited variation in copy number among parasite isolates thus pMUT ec6 should be the DNA probe of choice for sensitive detection of T. evansi.

Animals↗

Biosynthesis of 130-kilodalton mosquito larvicide in the cyanobacterium Agmenellum quadruplicatum PR-6.

The 130-kilodalton mosquito larvicidal gene, cloned from Bacillus thuringiensis var. israelensis, was introduced into the cyanobacterium Agmenellum quadruplicatum PR-6 by plasmid transformation. Transformed cells synthesized 130-kilodalton delta-endotoxin protein and showed mosquito larvicidal activity. Results demonstrate a potential use of a cyanobacterium for biological control of mosquitoes.

Aedes↗

Detection of Plasmodium falciparum using a cloned DNA probe: a simple procedure suitable for field application.

A simple procedure was developed for spotting blood samples directly onto nylon membrane filter, without the necessity to treat samples with pronase or proteinase K, followed by hybridizing with 32P-labelled DNA probe, pUNK1-45. This probe detected specifically P. falciparum DNA and did not cross react with DNA from man, P. knowlesi, P. chabaudi or P. cynomolgi. The probe was sensitive to detect a parasitemia of 0.001% in 20 microliters of blood.

Animals↗

The mosquito larvicidal activity of 130 kDa delta-endotoxin of Bacillus thuringiensis var. israelensis resides in the 72 kDa amino-terminal fragment.

Bacillus thuringiensis var. israelensis produces 130 kDa delta-endotoxin which is highly toxic to mosquito-larvae. The mosquito-larvicidal activity was delineated by sequential deletions from ends of the 1136 amino acids delta-endotoxin. A maximum of 459 amino acids could be removed from the carboxy-terminal of the toxin without a significant loss of the larvicidal activity. However, no more than 38 amino acids could be deleted from the amino-terminal without losing the toxicity. The truncated peptide of 72 kDa exhibited similar toxicity to the 130 kDa toxin and was between 39th and 677th amino acids.

Amino Acid Sequence↗

Differentiation of Plasmodium falciparum clones by means of a repetitive DNA probe.

A recombinant DNA probe, pBRK1-14, was constructed by inserting a repetitive DNA fragment of 753 base pairs obtained from Plasmodium falciparum, isolate K1, into the EcoRI/PstI cloning sites of pBR322. This probe could discriminate between different parasite clones derived from a single isolate by hybridization with Southern genomic blots.

Animals↗

Identification of isomorphic malaria vectors using a DNA probe.

About 7,000 recombinant clones, derived from chromosomally-identified families of wild-caught females of Anopheles dirus species D, were screened. The most promising clone was totally specific to species D when tested against single F1 females of all four species of the complex. In fresh specimens the clone was positive for DNA levels 150 times less than the normal DNA content of single individuals. Fresh adult males and females, larvae, and dried specimens have been successfully identified. The clone was sequenced; it is 124 bp long and appears to be repeated in the genome about 1.8 x 10(4) times.

Animals↗

Diagnostic restriction fragment patterns of DNA from the four isomorphic species of Anopheles dirus.

Total DNA from isofemale lines of the four isomorphic species of the Anopheles dirus were screened against twenty restriction endonucleases. Seven enzymes (Ava II, Alu I, Bgl II, Hae III, Hinf I, Mbo I and Sau3A I) produced some unique DNA fragments for each of the lines. Seven other enzymes (BamH I, BstN I, Cfo I, EcoR I, Kpn I, Nru I and Pst I) produced unique fragments in two of the lines. The remaining six enzymes (Hha I, Mnl I, Msp I, Nae I, Rsa I and Taq I) gave vague patterns which might result from either biological or technical causes. The results demonstrated that restriction fragment length of the DNA could be used as a means to distinguish isomorphic species of the Anopheles dirus.

Animals↗

Cloning and expression of 130-kd mosquito-larvicidal delta-endotoxin gene of Bacillus thuringiensis var. Israelensis in Escherichia coli.

Five recombinant E. coli clones exhibiting toxicity to Aedes aegypti larvae were obtained from a library of 800 clones containing XbaI DNA fragments of 110 kb plasmid from B. thuringiensis var. israelensis. All the five clones (pMU 14/258/303/388/679) had the same 3.8-kb insert and encoded a major protein of 130 kDa which was highly toxic to A. aegypti larvae. Three clones (pMU 258/303/388) transcribed the 130 kD a gene in the same direction as that of lac Z promoter of pUC12 vector whereas the transcription of the other two (pMU 14/679) was in the opposite direction. A 1.9-kb fragment of the 3.8 kb insert coded for a protein of 65 kDa. Partial DNA sequence of the 3.8 kb insert, corresponding to the 5'-terminal of the 130 kDa gene, revealed a continuous reading frame, a Shine-Dalgarno sequence and a tentative 5'-regulatory region. These results demonstrated that the 3.8 kb insert is a minimal DNA fragment containing a regulatory region plus the coding sequence of the 130 kDa protein that is highly toxic to mosquito larvae.

Amino Acid Sequence↗

Analysis of DNA from various species and strains of malaria parasites by restriction endonuclease fingerprinting.

1. DNA from various rodent Plasmodium species and strains and from P. falciparum, the human parasite, were analysed by agarose gel electrophoresis following digestion with restriction endonucleases EcoRI, Hind III and Bam Hl. Complex patterns of ethidium-stained bands were obtained, which showed similarity but reproducible differences among the various parasite species (P. chabaudi, P. yoelii, P. berghei and P. falciparum). 2. No differences could be discerned among two cloned strains of P. yoelii (33X, and YM) and among pyrimethamine-resistant (pyrimethamine + chloroquine)-resistant and the drug-sensitive P. chabaudi clone from which the resistant clones were derived. 3. From the known complexity of Plasmodium DNA it could be concluded that the visible bands were derived from repetitive DNA fractions.

Animals↗

Comparison of phosphorylated proteins in intact rat spermatozoa from caput and cauda epididymidis.

Spermatozoa from rat epididymis were incubated with [32P] orthophosphate and the radioactively labeled proteins were solubilized for analysis by electrophoresis in SDS-gels or in two-dimensional gels by isoelectric focusing and SDS electrophoresis. Three major phosphorylated protein bands of Mr 42,700, 56,200, and 76,200 were identified together with several minor phosphorylated proteins. The phosphorylated proteins of Mr 42,700 and 76,200 were more heterogeneous in charge than the one of Mr 56,000. The major phosphorylated proteins were not found in the isolated heads of cytosol derived from sperm sonicate. They were not solubilized by 1% Triton X-100 and 2 mM DTT, which removed the plasma membrane and mitochondria, but they were solubilized by 6 M urea and 5 mM DTT away from the insoluble fibrous sheath which contained no appreciable radioactivity. Most of the major phosphorylated bands were solubilized by 2% SDS and 4 mM DTT, leaving the insoluble outer dense fiber-connecting piece (ODF-CP) complex with some of the proteins. The ODF-CP complex of the spermatozoa from the cauda epididymis contained more of the major phosphorylated bands than did that of the spermatozoa from the caput region. Treatment with 1% SDS alone can solubilize about half of the major phosphorylated bands from the spermatozoa of the caput region and essentially none from the spermatozoa of the caudal part. The latter required 1% SDS and 13 mM DTT to achieve solubilization, suggesting the formation of disulfide bonds holding the three major phosphorylated proteins to some intracellular structure during sperm maturation.

Animals↗

Nature of the proteins which form disulfide bonds during the maturation of rat spermatozoa.

The proteins which form disulfide bonds during the maturation of rat spermatozoa were studied by comparing the [14C]carboxamidomethylated products between the caput and caudal spermatozoa. The total incorporation of [14C]iodoacetamide into 10(6) spermatozoa from the caput epididymis was 13.4 nmole, and those from the caudal epididymis was 3.6 nmole. The proteins extractable from the caput and caudal spermatozoa showed no detectable difference in SDS polyacrylamide gel electrophoretic patterns. Similarly, no detectable change was observed when the proteins were extracted and analysed on polyacrylamide gel containing the cationic detergent cetyltrimethyl-ammoniumbromide (CTAB). However, when the [14C]carboxamidomethylated products were compared, large differences were evident. There were 4 major carboxamidomethylated products on proteins with molecular weights of 32.000; 29.000; 22.000; and 13.000. The 32.000 and 29.000 dalton proteins were carboxamidomethylated about 15 times in the caput over the caudal spermatozoa. The results suggest that these 4 proteins constitute the majority of those which form disulfide bonds during the maturation of rat spermatozoa. The probable origins of those proteins were briefly discussed.

Animals↗