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S Kralj

Publications and source records attributed to S Kralj.

At least 19 recordsLinked to original sources

Annihilation of nematic point defects: pre-collision and post-collision evolution.

The annihilation of the nematic hedgehog and anti-hedgehog within an infinite cylinder of radius R is studied. The semi-microscopic lattice-type model and Brownian molecular dynamics are used. We distinguish among the i) early pre-collision, ii) late pre-collision, iii) early post-collision, and iv) late post-collision stages. In the pre-collision stage our results agree qualitatively with the existing experimental observations and also continuum-type simulations. The core of each defect exhibits a ring-like structure, where the ring axis is set perpendicular to the cylinder symmetry axis. For xi(0)d/(2R) > 1 the interaction between defects is negligible, where xi(0)d describes the initial separation of defects. Consequently, the defects annihilate within the simulation time window for xi(0)d/(2R) < 1. For close enough defects their separation scales as xi(d) [see text] (t(c)- t)(0.4+/-0.1), where t(c) stands for the collision time. In elastically anisotropic medium the hedgehog is faster than the anti-hedgehog. In the early pre-collision stage the defects can be treated as point-like particles, possessing inherent core structure, that interact via the nematic director field. In the late pre-collision stage the cores reflect the interaction between defects. After the collision a charge-less ring structure is first formed. In the early post-collision stage the ring adopts an essentially untwisted circular structure of the radius xi(r). In the late post-collision stage we observe two qualitatively different scenarios. For mu = xi(r)/R < mu(c) approximately 0.25 the ring collapses leading to the escaped radial equilibrium structure. For mu > mu(c) the chargeless ring triggers the nucleation growth into the planar polar structure with line defects.

Anisotropy↗

Influence of a random field on particle fractionation and solidification in liquid-crystal colloid mixtures.

The influence of a random-anisotropy (RA) type disorder on the phase separation of nematogen-colloid mixtures is studied theoretically by combining the phenomenological Landau-de Gennes, Carnahan-Starling, and hard-sphere crystal theories. We assume that the colloids enforce the RA disorder on the surrounding thermotropic liquid-crystal (LC) molecules. We adopt the Imry-Ma argument according to which the lower-temperature phase exhibits a domain-type pattern. The colloids impose a finite degree of orientational ordering even in the isotropic (paranematic) phase. In the ordered phase they give rise to a domain-type structure, resulting in the distorted nematic (speronematic) phase. The RA field opposes the phase separation tendency. With increasing disorder the difference between the paranematic and speronematic ordering decreases. Consequently there is a critical disorder, above which both phases become identical from the orientation point of view, but have different concentrations of colloids. We have also estimated another characteristic value of disorder above which the isotropic phase can exist only in a liquid state, the crystal phase being suppressed completely.

Anisotropy↗

Waves at the nematic-isotropic interface: thermotropic nematogen-non-nematogen mixtures.

We develop a theory for surface modes at the nematic-isotropic interface in thermotropic nematogen-non-nematogen mixtures. We employ the dynamical generalization of the Landau-de Gennes model for the orientational (nonconserved) order parameter, coupled with the Cahn-Hilliard equation for concentration (conserved parameter), and include hydrodynamic degrees of freedom. The theory uses a generalized form of the Landau-de Gennes free-energy density to include the coupling between the concentration of the non-nematogen fluid and the orientational order parameter. Two representative phase diagrams are shown. The method of matched asymptotic expansions is used to obtain a generalized dispersion relation. Further analysis is made in particular cases. Orientational order parameter relaxation dominates in the short-wavelength limit, while in the long-wavelength limit viscous damping processes become important. There is an intermediate region (depending on the temperature) in which the interaction between conserved parameter dynamics and hydrodynamics is important.

Journal Article↗

Periodic saddle-splay Freedericksz transition in nematic liquid crystals.

By use of a local stability criterion recently introduced, we predict the existence of a periodic saddle-splay Freedericksz (PSSF) transition that adds to the existing class of classical Freedericksz transitions driven in a nematic cell by an external field. Occurrence of the PSSF transition requires a saddle-splay elastic constant with a large enough magnitude and different anchoring strengths at the plates confining the nematic cell. Otherwise, either the PSSF transition does not occur at all, or it requires a field higher than that associated with the classical aperiodic splay Freedericksz (ASF) transition, in which case it is not observable. Here, we determine the threshold field for which the PSSF precedes the ASF transition, as well as the structure of the destabilizing mode.

Journal Article↗

Highly hydrolytic reuteransucrase from probiotic Lactobacillus reuteri strain ATCC 55730.

Lactobacillus reuteri strain ATCC 55730 (LB BIO) was isolated as a pure culture from a Reuteri tablet purchased from the BioGaia company. This probiotic strain produces a soluble glucan (reuteran), in which the majority of the linkages are of the alpha-(1-->4) glucosidic type ( approximately 70%). This reuteran also contains alpha-(1-->6)- linked glucosyl units and 4,6-disubstituted alpha-glucosyl units at the branching points. The LB BIO glucansucrase gene (gtfO) was cloned and expressed in Escherichia coli, and the GTFO enzyme was purified. The recombinant GTFO enzyme and the LB BIO culture supernatants synthesized identical glucan polymers with respect to linkage type and size distribution. GTFO thus is a reuteransucrase, responsible for synthesis of this reuteran polymer in LB BIO. The preference of GTFO for synthesizing alpha-(1-->4) linkages is also evident from the oligosaccharides produced from sucrose with different acceptor substrates, e.g., isopanose from isomaltose. GTFO has a relatively high hydrolysis/transferase activity ratio. Complete conversion of 100 mM sucrose by GTFO nevertheless yielded large amounts of reuteran, although more than 50% of sucrose was converted into glucose. This is only the second example of the isolation and characterization of a reuteransucrase and its reuteran product, both found in different L. reuteri strains. GTFO synthesizes a reuteran with the highest amount of alpha-(1-->4) linkages reported to date.

Escherichia coli↗

Annihilation of edge dislocations in smectic-A liquid crystals.

This paper presents a theoretical study of the annihilation of edge dislocations in the same smectic plane in a bulk smectic-A phase. We use a time-dependent Landau-Ginzburg approach where the smectic ordering is described by the complex order parameter psi( r--> ,t) =eta e(iphi) . This quantity allows both the degree of layering and the position of the layers to be monitored. We are able to follow both precollision and postcollision regimes, and distinguish different early and late behaviors within these regimes. The early precollision regime is driven by changes in the phi ( r--> ) configuration. The relative velocity of the defects is approximately inversely proportional to the interdefect separation distance. In the late precollision regime the symmetry changes within the cores of defects also become influential. Following the defect collision, in the early postcollision stage, bulk layer order is approached exponentially in time. At very late times, however, there seems to be a long-time power-law tail in the order parameter fluctuation relaxation.

Journal Article↗

Biochemical and molecular characterization of Lactobacillus reuteri 121 reuteransucrase.

Lactobacillus reuteri strain 121 uses sucrose for synthesis of a unique, soluble glucan ('reuteran') with mainly alpha-(1-->4) glucosidic linkages. The gene (gtfA) encoding this glucansucrase enzyme had previously been characterized. Here, a detailed biochemical and molecular analysis of the GTFA enzyme is presented. This is believed to be the first report describing reuteransucrase enzyme kinetics and the oligosaccharides synthesized with various acceptors. Alignments of the GTFA sequence with glucansucrases from Streptococcus and Leuconostoc identified conserved amino-acid residues in the catalytic core critical for enzyme activity. Mutants Asp1024Asn, Glu1061Gln and Asp1133Asn displayed 300- to 1000-fold-reduced specific activities. To investigate the role of the relatively large N-terminal variable domain (702 amino acids) and the relatively short C-terminal putative glucan-binding domain (267 amino acids, with 11 YG repeats), various truncated derivatives of GTFA (1781 amino acids) were constructed and characterized. Deletion of the complete N-terminal variable domain of GTFA (GTFA-Delta N) had little effect on reuteran characteristics (size, distribution of glycosidic linkages), but the initial transferase activity of the mutant enzyme increased drastically. Sequential C-terminal deletions (up to six YG repeats) in GTFA-Delta N also had little effect on reuteran characteristics. However, enzyme kinetics drastically changed. Deletion of 7, 8 or 11 YG repeats resulted in dramatic loss of total enzyme activity (43-, 63- and 1000-fold-reduced specific activities, respectively). Characterization of sequential C-terminal deletion mutants of GTFA-Delta N revealed that the C-terminal domain of reuteransucrase has an important role in glucan binding.

Amino Acid Sequence↗

Glucan synthesis in the genus Lactobacillus: isolation and characterization of glucansucrase genes, enzymes and glucan products from six different strains.

Members of the genera Streptococcus and Leuconostoc synthesize various alpha-glucans (dextran, alternan and mutan). In Lactobacillus, until now, the only glucosyltransferase (GTF) enzyme that has been characterized is gtfA of Lactobacillus reuteri 121, the first GTF enzyme synthesizing a glucan (reuteran) that contains mainly alpha-(1-->4) linkages together with alpha-(1-->6) and alpha-(1-->4,6) linkages. Recently, partial sequences of glucansucrase genes were detected in other members of the genus Lactobacillus. This paper reports, for the first time, isolation and characterization of dextransucrase and mutansucrase genes and enzymes from various Lactobacillus species and the characterization of the glucan products synthesized, which mainly have alpha-(1-->6)- and alpha-(1-->3)-glucosidic linkages. The four GTF enzymes characterized from three different Lb. reuteri strains are highly similar at the amino acid level, and consequently their protein structures are very alike. Interestingly, these four Lb. reuteri GTFs have relatively large N-terminal variable regions, containing RDV repeats, and relatively short putative glucan-binding domains with conserved and less-conserved YG-repeating units. The three other GTF enzymes, isolated from Lactobacillus sakei, Lactobacillus fermentum and Lactobacillus parabuchneri, contain smaller variable regions and larger putative glucan-binding domains compared to the Lb. reuteri GTF enzymes.

Amino Acid Motifs↗

Random anisotropy nematic model: connection with experimental systems.

We study theoretically the phase behavior of the continuum Random Anisotropy Nematic model. A domain-type pattern is assumed to appear in a distorted nematic liquid crystal (LC) phase. We map the model parameters to physical quantities characterizing LCs confined to Controlled-Pore Glasses and LC-aerosil dispersions. The domain size dependence on the disorder strength is obtained in accordance with the Imry-Ma prediction. The model estimates for temperature shifts of the paranematic-nematic phase transition and for the critical point, where this transition ceases to exist, are compared to the available experimental results.

Journal Article↗

Effect of dispersed silica particles on the smectic-A-smectic-C* phase transition.

We study the influence of the dispersed aerosil particle concentration on the soft and Goldstone mode dynamics across the smectic-A-smectic-C* phase transition using dielectric spectroscopy. We use CE8 liquid crystal filled with aerosils of concentrations x=m(s)/(m(s)+m(LC))=0.025, 0.05, 0.1, and 0.15, where m(s) and m(LC) stand for masses of aerosil and liquid crystal, respectively. In dispersions with x<0.15 the characteristic Goldstone frequency temperature dependence f(G)(T) is almost bulklike in contrast to the corresponding soft mode dependence f(s)(T). For x>0 the degeneracy of the modes at the SmA-SmC* transition temperature is lifted. With increasing x the modes' intensities gradually decrease and the critical effective coefficient gamma tentatively approaches the value characterizing the three-dimensional XY universality class. For x=0.15, a drastic change in behavior is observed. The Goldstone mode is completely suppressed and the f(s)(T) dependence begins to deviate from the Arrhenius behavior. A simple phenomenological approach is used in the explanation of results.

Journal Article↗

Molecular dynamics study of the isotropic-nematic quench.

Effects of cylindrical and spherical confinement on the kinetics of the isotropic-nematic quench is studied numerically. The nematic liquid crystal structure was modeled by a modified induced-dipole--induced-dipole interaction. Molecules were allowed to wander around points of a hexagonal lattice. Brownian molecular dynamics was used in order to access macroscopic time scales. In the bulk we distinguish between the early, domain, and late stage regime. The early regime is characterized by the exponential growth of the nematic uniaxial order parameter. In the domain regime domains are clearly visible and the average nematic domain size xi(d) obeys the dynamical scaling law xi(d)-t(gamma). The late stage evolution is dominated by dynamics of individual defects. In a confined system the qualitative change of the scaling behavior appears when xi(d) becomes comparable to a typical linear dimension R of the confinement. In the confining regime (xi(d)>or=R) the scaling coefficient gamma depends on the details of the confinement and also the final equilibrium nematic structure. The domain growth is well described with the Kibble-Zurek mechanism.

Journal Article↗

Molecular characterization of a novel glucosyltransferase from Lactobacillus reuteri strain 121 synthesizing a unique, highly branched glucan with alpha-(1-->4) and alpha-(1-->6) glucosidic bonds.

Lactobacillus reuteri strain 121 produces a unique, highly branched, soluble glucan in which the majority of the linkages are of the alpha-(1-->4) glucosidic type. The glucan also contains alpha-(1-->6)-linked glucosyl units and 4,6-disubstituted alpha-glucosyl units at the branching points. Using degenerate primers, based on the amino acid sequences of conserved regions from known glucosyltransferase (gtf) genes from lactic acid bacteria, the L. reuteri strain 121 glucosyltransferase gene (gtfA) was isolated. The gtfA open reading frame (ORF) was 5,343 bp, and it encodes a protein of 1,781 amino acids with a deduced M(r) of 198,637. The deduced amino acid sequence of GTFA revealed clear similarities with other glucosyltransferases. GTFA has a relatively large variable N-terminal domain (702 amino acids) with five unique repeats and a relatively short C-terminal domain (267 amino acids). The gtfA gene was expressed in Escherichia coli, yielding an active GTFA enzyme. With respect to binding type and size distribution, the recombinant GTFA enzyme and the L. reuteri strain 121 culture supernatants synthesized identical glucan polymers. Furthermore, the deduced amino acid sequence of the gtfA ORF and the N-terminal amino acid sequence of the glucosyltransferase isolated from culture supernatants of L. reuteri strain 121 were the same. GTFA is thus responsible for the synthesis of the unique glucan polymer in L. reuteri strain 121. This is the first report on the molecular characterization of a glucosyltransferase from a Lactobacillus strain.

Amino Acid Sequence↗

Smectic-A edge dislocations in a very thin cell.

We study stable "bookshelf" smectic-A structures within a very thin plane-parallel cell of thickness L in which the mismatch between surface preferred (d(s)) and intrinsic (d(0)) smectic layer thicknesses occurs. The Landau-Ginzburg approach based on a complex smectic order parameter is used. For a weak enough smectic positional anchoring strength W smectic layers adopt the modified bookshelf profile. In a thick enough cell with increasing W a lattice of edge dislocations is continuously formed at the confining surfaces and then depinned from them. The structure with dislocations is formed when the condition d(0)/(zeta(s)/d(0)/d(s)-1/) approximately 2 is fulfilled, where zeta(s) is the positional surface anchoring extrapolation length. If the cell is thin enough the dislocations formed at opposite cell plates annihilate and consequently the smectic layers adopt a locked bookshelf structure. This transition is discontinuous and takes place when d(0)/(L/d(0)/d(s)-1/) approximately 5 is realized. To observe these transitions in a cell of thickness L approximately 1microm the conditions W approximately 10(-6) J/ m(2) and /d(0)/d(s) - 1/ approximately 5 x 10(-4) have to be fulfilled. All the three qualitatively different structures coexist at the triple point.

Journal Article↗

Hydrophobic amino acid residues in the acceptor binding site are main determinants for reaction mechanism and specificity of cyclodextrin-glycosyltransferase.

Cyclodextrin-glycosyltransferases (CGTases) (EC ) preferably catalyze transglycosylation reactions with glucosyl residues as acceptor, whereas the homologous alpha-amylases catalyze hydrolysis reactions using water as acceptor. This difference in reaction specificity is most likely caused by the acceptor binding site. To investigate this in detail we altered the acceptor site residues Lys-232, Phe-183, Phe-259, and Glu-264 of Bacillus circulans strain 251 CGTase using site-directed mutagenesis. Lys-232 is of general importance for catalysis, which appears to result mainly from stabilization of the conformation of the loop containing the catalytic nucleophile Asp-229 and His-233, a residue that has been implied in transition state stabilization. Glu-264 contributes to the disproportionation reaction only, where it is involved in initial binding of the (maltose) acceptor. Phe-183 and Phe-259 play important and distinct roles in the transglycosylation reactions catalyzed by CGTase. Mutation of Phe-183 affects especially the cyclization and coupling reactions, whereas Phe-259 is most important for the cyclization and disproportionation reactions. Moreover, the hydrophobisity of Phe-183 and Phe-259 limits the hydrolyzing activity of the enzyme. Hydrolysis can be enhanced by making these residues more polar, which concomitantly results in a lower transglycosylation activity. A double mutant was constructed that yielded an enzyme preferring hydrolysis over cyclization (15:1), whereas the wild type favors cyclization over hydrolysis (90:1).

Amino Acids↗

Surface depinning of smectic-A edge dislocations.

Using a Landau-de Gennes approach, we model the formation of an edge dislocation in a smectic-A cell initially in the bookshelf structure. The driving force is the mismatch between the layer thickness in a bulk smectic-A liquid crystal and that imposed by confining plates. The core structure of the dislocation is calculated taking into account spatial variations of the smectic translational order parameter. We numerically determine the critical condition for the surface-driven formation and depinning of the dislocation. By exploiting this phenomenon, we show how the value of the positional anchoring strength at the surface can be determined.

Journal Article↗

Influence of surface treatment on the smectic ordering within porous glass

The influence of the surface treatment on the Sm-A-N phase transition of the 8CB (octylcyanobiphenyl) liquid crystal confined to controlled pore glass (CPG) matrices is studied. The characteristic linear size of voids in the chosen CPG matrix is 0.2 &mgr;m. The voids' surface was either nontreated or silane treated enforcing tangential or homeotropic anchoring, respectively. In both cases the x-ray measurements reveal a qualitative change of the temperature dependence of the smectic order-parameter correlation length in comparison to the bulk sample. In addition, the apparent smectic pretransitional ordering is observed for the silane-treated sample. A theoretical description based on the Landau-de Gennes type approach is developed to explain the experimental data. The surface positional anchoring strength of the silane-treated sample is estimated to be of the order of 10(-4) J/m(2) and at least 100 times weaker for the nontreated case.

Journal Article↗

Biaxial torus around nematic point defects.

We study the biaxial structure of both line and point defects in a nematic liquid crystal confined within a capillary tube whose lateral boundary enforces homeotropic anchoring. According to Landau-de Gennes theory the local order in the material is described by a second-order tensor Q, which encompasses both uniaxial and biaxial states. Our study is both analytical and numerical. We show that the core of a line defect with topological charge M=1 is uniaxial in the axial direction. At the lateral boundary, the uniaxial ordering along the radial direction is reached in two qualitatively different ways, depending on the sign of the order parameter on the axis. The point defects with charge M=+/-1 exhibit a uniaxial ring in the plane orthogonal to the cylinder axis. This ring is in turn surrounded by a torus on which the degree of biaxiality attains its maximum. The typical lengths that characterize the structure of these defects depend both on the cylinder radius and the biaxial correlation length. It seems that the core of the point defect does not depend on the far nematic director field in the bulk limit.

Journal Article↗