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Biomedical subjects

Robert Holyst

Publications and source records attributed to Robert Holyst.

5 recordsLinked to original sources

Diffusion and viscosity in a crowded environment: from nano- to macroscale.

Although water is the chief component of living cells, food, and personal care products, the supramolecular components make their viscosity larger than that of water by several orders of magnitude. Using fluorescence correlation spectroscopy (FCS), photon correlation spectroscopy (PCS), NMR, and rheology data, we show how the viscosity changes from the value for water at the molecular scale to the large macroviscosity. We determined the viscosity experienced by nanoprobes (of sizes from 0.28 to 190 nm) in aqueous micellar solution of hexaethylene-glycol-monododecyl-ether (in a range of concentration from 0.1% w/w to 35% w/w) and identified a clear crossover at the length scale of 17 +/- 2 nm (slightly larger than persistence length of micelles) at which viscosity acquires its macroscopic value. The sharp dependence of the viscosity coefficients on the size of the probe in the nanoregime has important consequences for diffusion-limited reactions in crowded environments (e.g., living cells).

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Pattern formation in nonextensive thermodynamics: selection criterion based on the Renyi entropy production.

We analyze a system of two different types of Brownian particles confined in a cubic box with periodic boundary conditions. Particles of different types annihilate when they come into close contact. The annihilation rate is matched by the birth rate, thus the total number of each kind of particles is conserved. When in a stationary state, the system is divided by an interface into two subregions, each occupied by one type of particles. All possible stationary states correspond to the Laplacian eigenfunctions. We show that the system evolves towards those stationary distributions of particles which minimize the Renyi entropy production. In all cases, the Renyi entropy production decreases monotonically during the evolution despite the fact that the topology and geometry of the interface exhibit abrupt and violent changes.

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Annihilation of point defects on a line.

We discuss the evolution of the distribution function of distances between point defects of opposite signs distributed on a line of finite length interacting via a potential attractive at short distances and repulsive at large distances. The standard deviation of the distribution grows quickly at short times, attains maximum, and decreases logarithmicaly at longer times. The distance between the defects increases monotonically and at equilibrium is about two times larger than the distance at which the repulsive force attains maximum. The distance dependent viscosity does not change qualitatively these conclusions, but only increases the time scale of evolution by one order of magnitude.

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When boundaries dominate: dislocation dynamics in smectic films.

We discuss the influence of dissipation at a system boundary (film-meniscus interface) on the dynamics of dislocation loops inside a smectic film. This dissipation induces a strong coupling between dislocations-effectively independent of their separation-leading to their nontrivial dynamics. Because of these dynamics, the effective "dynamical" radius of nucleation can be 10 times larger than the usual static critical radius.

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