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Biomedical subjects

Rint P Sijbesma

Publications and source records attributed to Rint P Sijbesma.

At least 19 recordsLinked to original sources

Dynamic heterogeneity in hydrogen-bonded polymers.

We report on neutron spin echo experiments on hydrogen-bonded polymers and compare the experimentally found dynamical structure factor with theoretical predictions. Surprisingly, we find that in the melt phase the expected scaling of the Rouse dynamics is not satisfied. We propose an explanation based upon the large spatial volume occupied by the connecting groups. When the effects of these bulky groups on the local friction are taken into account, the usual scaling behavior is restored.

Journal Article↗

Amplification of chirality in benzene tricarboxamide helical supramolecular polymers.

The chirality of benzene tricarboxamides is expressed and amplified into the helicity of self-assembled columnar aggregates according to 'sergeants and soldiers' and 'majority rules' principles; the strength of the amplification is analysed quantitatively and the effect of the number of chiral groups in the sergeants is studied.

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Olefin metathesis and quadruple hydrogen bonding: a powerful combination in multistep supramolecular synthesis.

We show that combining concepts generally used in covalent organic synthesis such as retrosynthetic analysis and the use of protecting groups, and applying them to the self-assembly of polymeric building blocks in multiple steps, results in a powerful strategy for the self-assembly of dynamic materials with a high level of architectural control. We present a highly efficient synthesis of bifunctional telechelic polymers by ring-opening metathesis polymerization (ROMP) with complementary quadruple hydrogen-bonding motifs. Because the degree of functionality for the polymers is 2.0, the formation of alternating, blocky copolymers was demonstrated in both solution and the bulk leading to stable, microphase-separated copolymer morphologies.

Alkanes↗

Catalyst recycling via hydrogen-bonding-based affinity tags.

[Structure: see text] A novel procedure for catalyst recycling is described. Copper(I)-based catalysts, equipped with an affinity tag, are isolated from crude reaction mixtures on the basis of quadruple hydrogen-bonding interactions using a resin functionalized with complementary affinity tags. Recycled catalysts were successfully used to catalyze a tandem Sonogashira coupling/5-endo-dig cyclization and a Cu-catalyzed [3+2] Huisgen cycloaddition reaction in high yields.

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Quantification of ultrasound-induced chain scission in PdII-phosphine coordination polymers.

A kinetically inert, reversible coordination polymer (3) was obtained through complexation of dicyclohexylphosphine telechelic poly(tetrahydrofuran) with palladium(II) dichloride. This coordination polymer is unreactive towards palladium(II) dichloride bis(1-diphenylphosphino)dodecane (4), because ligand dissociation in the coordination polymer is slow. However, upon ultrasonication of solutions of 3 in toluene in the presence of 4, formation of palladium(II) heterocomplexes was observed with (31)P NMR spectroscopy. Heterocomplex formation, the consumption of 4, and changes in molecular weight were used to quantify the scission process. In the presence of 60 equivalents of the alkyldiphenylphosphine stopper complex, the reduction in molecular weight was strongly enhanced; over a period of eight hours the weight-averaged molecular weight was reduced from 1.1x10(5) to 2.3x10(4) g mol(-1) while 47 % of the palladium(II) complexes in the coordination polymer had been converted into heterocomplexes. These results show that the system of 3 in combination with scavenger 4 is a suitable system to study the efficiency of ultrasound-induced chain scission of coordination polymers.

Journal Article↗

Pd-catalyzed amidation of 2-chloro- and 2,7-dichloro-1,8-naphthyridines.

[reactions: see text] The catalytic amidation between 2-chloro- and 2,7-dichloro-1,8-naphthyridines and primary amides bearing functional groups is reported. When Pd(OAc)2, xantphos, and K2CO3 are used, it is possible to obtain symmetric as well as nonsymmetric 2,7-diamido-1,8-naphthyridines in 50-90% yield with good functional-group tolerance. Monoamidation of 2,7-dichloro-1,8-naphthyridine using 0.9 equiv of the amide proceeded with good selectivity compared to the formation of the diamide, but as a result of the difficult isolation of the product, isolated yields were poor to moderate (22-42%).

Journal Article↗

Dendrimer-based transient supramolecular networks.

Association of a 16-fold excess of a monodisperse telechelic oligo(THF) (Mw = 1270 g/mol) containing two end groups that selectively bind to the 32 binding sites of a fifth generation dendritic host (Mw = 18,511 g/mol and radius R(h) = 2.4 nm) results in the formation of reversible and dynamic supramolecular complexes. The structure of these complexes in solution depends strongly on the concentration. At low concentration, the two end groups of one guest are proposed to complex to the same host, and flowerlike structures are formed with a radius of R(h) = 3.7 nm. At higher concentrations, both end groups of one guest are complexed to different hosts, forming a bridge between them. This gives rise to the formation of larger associates, and eventually to a transient supramolecular network. Dynamic light scattering unequivocally showed that three distinct relaxation processes, associated with the proposed structures, are present in this system. In addition to the dynamics related to the flowerlike (fast) and the transient network structures (slow), an intermediate dynamic process is attributed to the cooperative motion of a few (approximately 6) connected flowerlike structures. Rheological data elucidate the nature of the intermittent network responsible for the slowest process. A monofunctional guest, not capable of forming a network structure, was used as a reference, and starlike supramolecular structures are formed at all concentrations, indeed.

Acetates↗

Morphological control and molecular recognition by bis-urea hydrogen bonding in micelles of amphiphilic tri-block copolymers.

Hydrogen bonding between urea groups of amphiphilic tri-block copolymers considerably affects their self-assembly in water, which results in a strong modification of morphology and viscosity of aqueous solutions; the hydrogen bonding motif in these amphiphilic copolymers allows molecular recognition of small molecules with complementary hydrogen bonding units.

Cryoelectron Microscopy↗

Self-assembled pentamers and hexamers linked through quadruple-hydrogen-bonded 2-ureido-4[1H]-pyrimidinones.

The preorganization of bifunctional 2-ureido-4-pyrimidinones mediated by either 1,3-substituted adamantane or meta-substituted phenylene ring linkers leads to the preferred formation of stable pentameric (1)(5) and hexameric (2)(6) assemblies, respectively. Despite the high binding constant of the 2-ureido-4-pyrimidinone dimers and the highly preorganized structure of the monomer, the predominant formation of cycles (1)(5) and (2)(6) in solution occurs only within a specific concentration range.

Journal Article↗

Disulfide exchange in hydrogen-bonded cyclic assemblies: stereochemical self-selection by double dynamic chemistry.

Stereoselective cyclization of cystine-based bifunctional 2-ureido-4[1H]-pyrimidinone derivatives in CDCl(3) solutions was demonstrated by (1)H NMR spectroscopy. Thiolate-catalyzed disulfide exchange in solution led to the equilibration of different diastereomers of 1. At low concentrations, where formation of cyclic assemblies is the dominant mode of association, the molecules act as their own template. At these concentrations the meso diastereomer is formed preferentially, indicating a higher stability of its cyclic assemblies under the applied conditions, in comparison to the other diastereomers.

Catalysis↗

Molecular recognition in a thermoplastic elastomer.

Selective incorporation of bisurea guests in thermoplastic elastomers with poly(tetrahydrofuran) soft blocks and bisurea containing hard blocks is observed when the distances between the urea groups of host and guest match. The incorporation leads to significant modulation of mechanical properties. With bisurea-functionalized dyes as guests, a strong difference in extractability by detergent solution was shown between dyes differing by just one methylene unit between urea groups. Upon elongation of elastomer films, strong differences in alignability of matching and nonmatching dyes were observed.

Journal Article↗

Hierarchical self-assembly of columnar aggregates.

Biology often uses hierarchical self-assembly to produce complex functional structures from smaller components. At each level of this stepwise process, non-covalent interactions bring together the subunits of a lower level of complexity, using the information encoded in their structures. Applying this approach to synthetic systems represents a formidable challenge, because it requires a high degree of command of non-covalent interactions. In this tutorial review, recent developments in the hierarchical self-assembly of discrete columnar aggregates are discussed.

Alkanes↗

Complementary quadruple hydrogen bonding in supramolecular copolymers.

This paper describes a supramolecular copolymer based on quadruple hydrogen bonding between self-complementary ureido-pyrimidinones and complementary 2,7-diamido-1,8-naphthyridines. In contrast to previously reported polymer systems solely based on complementary hydrogen-bonding units, these polymers retain a high DP over a broad composition range.

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pi-Stacked quadruply hydrogen-bonded dimers: pi-stacking influences H-bonding.

[reaction: see text] The effects of pi-stacking on the stability of multiply hydrogen-bonded systems are investigated using hybrid DFT calculations on pi-stacked quadruply H-bonded dimers of ureidopyrimidinone in its different tautomeric forms. Both the strengths of the hydrogen bonds and the relative occurrence of tautomers are influenced by pi-stacking; electrostatics and natural bond orbital analysis are used to explain these observations. Finally, these conclusions are independent of the precise nature of the multiply hydrogen-bonded systems, including the DNA base pairs.

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