Biomedical subjects

R Mannella

Publications and source records attributed to R Mannella.

At least 19 recordsLinked to original sources

PubMed2005

Divergence of the chaotic layer width and strong acceleration of the spatial chaotic transport in periodic systems driven by an adiabatic ac force.

We show for the first time that a weak perturbation in a Hamiltonian system may lead to an arbitrarily wide chaotic layer and fast chaotic transport. This generic effect occurs in any spatially periodic Hamiltonian system subject to a sufficiently slow ac force. We explain it and develop an explicit theory for the layer width, verified in simulations. Chaotic spatial transport as well as applications to the diffusion of particles on surfaces, threshold devices, and others are discussed.

Journal Article↗

PubMed2005

Solution of the boundary value problem for optimal escape in continuous stochastic systems and maps.

Topologies of invariant manifolds and optimal trajectories are investigated in stochastic continuous systems and maps. A topological method is introduced that simplifies the solution of boundary value problems: The activation energy is calculated as a function of a set of parameters characterizing the initial conditions of the escape path. The method is applied explicitly to compute the optimal escape path and the activation energy for a variety of dynamical systems and maps.

Journal Article↗

PubMed2004

Quasisymplectic integrators for stochastic differential equations.

Two specialized algorithms for the numerical integration of the equations of motion of a Brownian walker obeying detailed balance are introduced. The algorithms become symplectic in the appropriate limits and reproduce the equilibrium distributions to some higher order in the integration time step. Comparisons with other existing integration schemes are carried out both for static and dynamical quantities.

Journal Article↗

PubMed2004

Dynamic importance sampling for the escape problem in nonequilibrium systems: observation of shifts in optimal paths.

The activation problem is investigated in two-dimensional nonequilibrium systems. A numerical approach based on dynamic importance sampling (DIMS) is introduced. DIMS accelerates the simulations and allows the investigation to access noise intensities that were previously forbidden. The escape path is observed to be shifted compared to a heteroclinic trajectory calculated in the limit of zero-noise intensity. A theory to account for such shifts is presented and shown to agree with the simulations for a wide range of noise intensities.

Ion Channels↗

PubMed2003

Fast monte carlo simulations and singularities in the probability distributions of nonequilibrium systems.

A numerical technique is introduced that reduces exponentially the time required for Monte Carlo simulations of nonequilibrium systems. Results for the quasistationary probability distribution in two model systems are compared with the asymptotically exact theory in the limit of extremely small noise intensity. Singularities of the nonequilibrium distributions are revealed by the simulations.

Journal Article↗

PubMed2003

Drastic facilitation of the onset of global chaos.

We show that the onset of global chaos in a time periodically perturbed Hamiltonian system may occur at unusually small magnitudes of perturbation if the unperturbed system possesses more than one separatrix. The relevant scenario is the combination of the overlap in the phase space between resonances of the same order and their overlap in energy with chaotic layers associated with separatrices of the unperturbed system. We develop the asymptotic theory and verify it in simulations.

Journal Article↗

PubMed2001

Generic noise-enhanced coding in neuronal arrays.

We demonstrate that, in a parallel array of model neurons, the optimizing influence of internal noise on the global information is far greater than that reported for a single neuron. In particular, stochastic resonance (SR) effects, that optimize information transmission, occur independent of stimulus level or the setting of the neural threshold. We further show that adjusting the threshold to maximize information transmission does not remove SR effects. Consequently, and in contrast to a single neuron, in neuronal arrays noise appears to be an essential element of an optimal coding strategy.

Biophysical Phenomena↗

PubMed2001

Strong enhancement of noise-induced escape by nonadiabatic periodic driving due to transient chaos.

We have found a mechanism by which a moderately weak nonadiabatic periodic driving may significantly facilitate noise-induced interwell transitions in an underdamped multiwell system. The mechanism is associated with the onset of a homoclinic tangle in the noise-free system: if the ratio of the driving amplitude A to the damping gamma exceeds a critical value approximately 1, then the basins of attraction of the linear responses related to different wells are mixed in a complex manner in some layer associated with the separatrix of the undriven nondissipative system, and the minimal energy in such layer is lower than the top of the barrier. Thus the energy to which the system needs to be activated by the noise, to be able to make a transition, is lower than the top of the barrier.

Journal Article↗

PubMed2001

Short time scales in the Kramers problem: a stepwise growth of the escape flux.

We prove rigorously and demonstrate in simulations that, for a potential system staying initially at the bottom of a well, the escape flux over the barrier grows on times of the order of a period of eigenoscillation in a stepwise manner, provided that friction is small or moderate. If the initial state is not at the bottom of the well, then, typically, some of the steps transform into oscillations. The stepwise/oscillatory evolution at short times appears to be a generic feature of a noise-induced flux.

Journal Article↗

PubMed2000

Atomic micromotion and geometric forces in a triaxial magnetic trap

Nonadiabatic motion of Bose-Einstein condensates of rubidium atoms arising from the dynamical nature of a time-orbiting-potential (TOP) trap was observed experimentally. The orbital micromotion of the condensate in velocity space at the frequency of the rotating bias field of the TOP was detected by a time-of-flight method. A dependence of the equilibrium position of the atoms on the sense of rotation of the bias field was observed. We have compared our experimental findings with numerical simulations. The nonadiabatic following of the atomic spin in the trap rotating magnetic field produces geometric forces acting on the trapped atoms.

Journal Article↗

PubMed2000

Fluctuations and the energy-optimal control of chaos

The energy-optimal entraining of the dynamics of a periodically driven oscillator, moving it from a chaotic attractor to a coexisting stable limit cycle, is investigated via analysis of fluctuational transitions between the two states. The deterministic optimal control function is identified with the corresponding optimal fluctuational force, which is found by numerical and analog simulations.

Journal Article↗

PubMed2000

Symmetry breaking of fluctuation dynamics by noise color

Activated escape is investigated for systems that are driven by noise whose power spectrum peaks at a finite frequency. Analytic theory and analog and digital experiments show that the system dynamics during escape exhibit a symmetry-breaking transition as the width of the fluctuational spectral peak is varied. For double-well potentials, even a small asymmetry may result in a parametrically large difference of the activation energies for escape from different wells.

Journal Article↗

PubMed2000

Ratchet driven by quasimonochromatic noise

The currents generated by noise-induced activation processes in a periodic potential are investigated analytically, by digital simulation and by performing analog experiments. The noise is taken to be quasimonochromatic and the potential to be a smoothed sawtooth. Two analytic approaches are studied. The first involves a perturbative expansion in inverse powers of the frequency characterizing quasimonochromatic noise and the second is a direct numerical integration of the deterministic differential equations obtained in the limit of weak noise. These results, together with the digital and analog experiments, show that the system does indeed give rise, in general, to a net transport of particles. All techniques also show that a current reversal exists for a particular value of the noise parameters.

Journal Article↗

PubMed1996