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Biomedical subjects

R Kopelman

Publications and source records attributed to R Kopelman.

At least 55 records · Page 3Linked to original sources

Exciton microscopy and reaction kinetics in restricted spaces.

We describe the development of a new biologically non-invasive ultraresolution light microscopy, based on combining the energy transfer "spectral ruler" method with the micro-movement technology employed in scanning tunneling microscopy (STM). We use near-field scanning optical microscopy, with micropipettes containing crystals of energy packaging donor molecules in the tips that can have apertures below 5 nm. The excitation of these tips extends near field microscopy well beyond the 50 nm limit. The theoretical resolution limit for this spectrally sensitive light microscopy is well below 1 nm. Exciton microscopy is ideally suited for kinetic studies that are spatially resolved on the molecular scale, i.e., at a single molecule site. Moreover, the successful operation of the scanning exciton tip depends on an understanding of reaction kinetics in restricted spaces. In contrast to the many recent reviews on scanning tip microscopies, there is no adequate review of the recent revolutionary developments in the area of reaction kinetics in confined geometries. We thus attempt such a review in this paper. Reactions in restricted spaces rarely get stirred vigorously by convection and are thus often controlled by diffusion. Furthermore, the compactness of the Brownian motion leads to both anomalous diffusion and anomalous reaction kinetics. Elementary binary reactions of the type A + A----Products, A + B----Products and A + C----C + Products are discussed theoretically for both batch and steady-state conditions. The anomalous reaction orders and time exponents (for the rate coefficients) are discussed for various situations. Global and local rate laws are related to particle distribution functions. Only Poissonian distributions guarantee the classical rate laws. Reactant self-organization leads to interesting new phenomena. These are demonstrated by theory, simulations, and experiments. The correlation length of reactant production affects the self-ordering length-scale. These effects are demonstrated experimentally, including the stability of reactant segregation observed in chemical reactions in one-dimensional spaces, e.g., capillaries and microcapillaries. The gap between the reactant A (cation) and B (anion) actually increases in time, and extends over millimeters. Excellent agreement is found among theory, simulation, and experiment for the various scaling exponents.

Kinetics↗

Mutational analysis of N-linked glycosylation sites of Friend murine leukemia virus envelope protein.

The roles played by the N-linked glycans of the Friend murine leukemia virus envelope proteins were investigated by site-specific mutagenesis. The surface protein gp70 has eight potential attachment sites for N-linked glycan; each signal asparagine was converted to aspartate, and mutant viruses were tested for the ability to grow in NIH 3T3 fibroblasts. Seven of the mutations did not affect virus infectivity, whereas mutation of the fourth glycosylation signal from the amino terminus (gs4) resulted in a noninfectious phenotype. Characterization of mutant gene products by radioimmunoprecipitation confirmed that glycosylation occurs at all eight consensus signals in gp70 and that gs2 carries an endoglycosidase H-sensitive glycan. Elimination of gs2 did not cause retention of an endoglycosidase H-sensitive glycan at a different site, demonstrating that this structure does not play an essential role in envelope protein function. The gs3- mutation affected a second posttranslational modification of unknown type, which was manifested as production of gp70 that remained smaller than wild-type gp70 after removal of all N-linked glycans by peptide N-glycosidase F. The gs4- mutation decreased processing of gPr80 to gPr90, completely inhibited proteolytic processing of gPr90 to gp70 and Pr15(E), and prevented incorporation of envelope products into virus particles. Brefeldin A-induced mixing of the endoplasmic reticulum and parts of the Golgi apparatus allowed proteolytic processing of wild-type gPr90 to occur in the absence of protein transport, but it did not overcome the cleavage defect of the gs4- precursor, indicating that gs4- gPr90 is resistant to the processing protease. The work reported here demonstrates that the gs4 region is important for env precursor processing and suggests that gs4 may be a critical target in the disruption of murine leukemia virus env product processing by inhibitors of N-linked glycosylation.

Amino Acid Sequence↗