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Biomedical subjects

R K Butlin

Publications and source records attributed to R K Butlin.

12 recordsLinked to original sources
PubMed2000

Persistence of asexuality through mixed reproduction in Eucypris virens (Crustacea, Ostracoda).

The ostracod species Eucypris virens exhibits geographical parthenogenesis, with rare sexual populations in southern Europe and widespread asexual populations elsewhere. DNA sequence data from the nuclear ITS1 and mitochondrial COI regions have been used to estimate genetic variabilities and reconstruct phylogenies. The observed divergence was exceptionally high, with intraspecific maxima of 10.3% (ITS1) and 20.9% (COI) among European lineages, levels reported for interspecific comparisons of other taxa. Phylogenetic reconstructions reveal multiple origins of asexual clones from sexual populations. However, we argue that such data can only provide a lower limit on the number of origins of asexual reproduction, and an upper limit on the age of asexual lineages. Congruence between gene trees for different loci can provide support for the inference of long-term apomictic reproduction. Nuclear and mitochondrial data differ in their placement of some asexual clones, possibly indicating that genetic exchange has taken place between sexual and asexual lineages. Such intraspecific hybridization is one route to combine the benefits of both reproductive modes, and it might explain how asexuality managed to persist in E. virens even in long, evolutionary terms.

Animals↗
PubMed2000

Evidence for mitochondrial introgression between Anopheles bwambae and Anopheles gambiae.

There is evidence for introgression between the malaria vectors Anopheles gambiae and Anopheles arabiensis, which belong to the Anopheles gambiae complex. Here we consider their relationship to another member of the complex, Anopheles bwambae. Species identifications were made using rDNA-PCR and revealed one An. bwambae/gambiae hybrid among 459 wild-caught mosquitoes. A 237-nucleotide region of the mitochondrial ND5 gene was sequenced in sixty-nine individuals. The results suggest that there is an An. bwambae specific group of haplotypes. However, two An. bwambae individuals carried haplotypes typical of An. gambiae and An. arabiensis. This is the first evidence for introgression between An. bwambae and other species of the An. gambiae complex and suggests that introgression may be more widespread, also occurring between other members of the complex.

Animals↗
PubMed2000

Population structure and population history of Anopheles dirus mosquitoes in Southeast Asia.

Separating the confounding effects of long-term population history from gene flow can be difficult. Here, we address the question of what inferences about gene flow can be made from mitochondrial sequence data in three closely related species of mosquitoes, Anopheles dirus species A, C, and D, from southeast Asia. A total of 84 sequences of 923 bp of the mitochondrial cytochrome oxidase I gene were obtained from 14 populations in Thailand, Myanmar, and Bangladesh. The genealogy of sequences obtained from two populations of AN: dirus C indicates no contemporary gene flow between them. The F(ST) value of 0.421 therefore probably represents a recent common history, perhaps involving colonization events. Anopheles dirus A and D are parapatric, yet no differentiation was seen either within or between species. The starlike genealogy of their haplotypes, smooth unimodal mismatch distributions, and excess of low frequency mutations indicate population expansion in An. dirus A and D. This, rather than widespread gene flow, explains their low within-species F(ST) values (0.018 and 0.022). The greater genetic diversity of An. dirus D suggests that expansion occurred first in species D and subsequently in species A. The current geographical separation and low hybrid fitness of these species also argue against ongoing interspecific gene flow. They suggest instead either historical introgression of mtDNA from An. dirus D into species A followed by independent range expansions, or a selective sweep of mtDNA that originated in An. dirus D. While not excluding contemporary gene flow, historical population processes are sufficient to explain the data in An. dirus A and D. The genealogical relationships between haplotypes could not be used to make inferences of gene flow because of extensive homoplasy due to hypervariable sites and possibly also recombination. However, it is concluded that this approach, rather than the use of fixation indices, is required in the future to understand contemporary gene flow in these mosquitoes. The implications of these results for understanding gene flow in another important and comparable group of malaria vector mosquitoes in Africa, the An. gambiae complex, are also discussed.

Animals↗
PubMed1999

Identification of five species of the Anopheles dirus complex from Thailand, using allele-specific polymerase chain reaction.

The Anopheles dirus complex of mosquitoes contains some of the most important vectors of malaria in Southeast Asia. To distinguish five species of the complex that occur in Thailand, a method using the polymerase chain reaction (PCR) was developed. The method utilizes allele-specific amplification to detect fixed differences between the species in the DNA sequence of the ribosomal DNA internal transcribed spacer 2. Primers were designed to amplify fragments of diagnostic length from the DNA of the different species. The method was tested on 179 mosquitoes of the An. dirus complex from many parts of Thailand and shown to be effective. Every specimen was unambiguously identified as species A, B, C, D or F (i.e. An. dirus s.s. species B, C, D or An. nemophilous, respectively) by the PCR method, with confirmation of 58/61 identifications from polytene chromosome characteristics. For the other three specimens (3/44 from Kanchanaburi 5 locality), there was disagreement between the PCR and chromosomal methods of species identification (probably due to errors in the chromosomal identifications). Primers can be combined in a single PCR reaction providing a rapid, sensitive and straightforward method of species identification. Only small quantities of DNA are required, leaving most of the mosquito to be used for other analyses.

Alleles↗
PubMed1999

PCR-based methods for identification of species of the Anopheles minimus group: allele-specific amplification and single-strand conformation polymorphism.

We report two polymerase chain reaction (PCR)-based methods for distinguishing morphologically similar species based on amplification of a variable region of the 28S gene of ribosomal DNA. The four species we investigated are mosquitoes of the Anopheles minimus group: An. aconitus, An. varuna and An. minimus species A and C. The formally named species are vectors of human malaria parasites in south-east Asia but are difficult to distinguish with certainty on the basis of morphology. Allele-specific amplification was used to differentiate An. minimus A from An. minimus C. This technique has been widely used for the diagnosis of species. Single-strand conformation polymorphisms (SSCPs) were used to separate all four species. This technique, which has seldom been used for species identification, has many advantages: it does not require sequence information beyond that needed for amplification; it is ideally suited for the detection of heterozygotes; it utilizes more of the information in the PCR product than allele-specific amplification; it distinguishes all four species considered here and could easily be extended to other species; previously unknown intraspecific variation and additional species are likely to be detected. Thus, SSCPs provide valuable population genetic information which allele-specific amplification does not.

Alleles↗
PubMed1998

Levels of genetic polymorphism: marker loci versus quantitative traits.

Species are the units used to measure ecological diversity and alleles are the units of genetic diversity. Genetic variation within and among species has been documented most extensively using allozyme electrophoresis. This reveals wide differences in genetic variability within, and genetic distances among, species, demonstrating that species are not equivalent units of diversity. The extent to which the pattern observed for allozymes can be used to infer patterns of genetic variation in quantitative traits depends on the forces generating and maintaining variability. Allozyme variation is probably not strictly neutral but, nevertheless, heterozygosity is expected to be influenced by population size and genetic distance will be affected by time since divergence. The same is true for quantitative traits influenced by many genes and under weak stabilizing selection. However, the limited data available suggest that allozyme variability is a poor predictor of genetic variation in quantitative traits within populations. It is a better predictor of general phenotypic divergence and of postzygotic isolation between populations or species, but is only weakly correlated with prezygotic isolation. Studies of grasshopper and planthopper mating signal variation and assortative mating illustrate how these characters evolve independently of general genetic and morphological variation. The role of such traits in prezygotic isolation, and hence speciation, means that they will contribute significantly to the diversity of levels of genetic variation within and among species.

Alleles↗
PubMed1998

The use of microsatellites to study gene flow in natural populations of Anopheles malaria vectors in Africa: potential and pitfalls.

The potential of microsatellites as population genetic markers in the malarial vectors Anopheles gambiae and Anopheles arabiensis was assessed using 4 loci. Substantial genetic divergence was found not only between these species but also between the Mopti and Forest chromosomal forms of An. gambiae, demonstrating that microsatellites do have the power to detect barriers to gene flow in these mosquitoes. However, application and interpretation of microsatellites was not necessarily straightforward. Despite the use of semiautomated fluorescent technology that enabled fragment sizes to be determined precisely, some difficulty was encountered in allele classification. Sequence analysis revealed insertions/deletions and base changes in the flanking regions of the microsatellite as the probable cause of this problem. The implications of this and other potential pitfalls in the use of microsatellites to study vector populations are discussed.

Africa, Western↗
PubMed1994

Recombination suppressors and the evolution of new species.

Chromosomal rearrangements are often the only apparent difference between closely related species, although it is not clear whether they are a cause or a by-product of speciation. We suggest that changes in the pattern of recombination may provide a link between chromosomal rearrangements and speciation. In models of speciation by sexual selection and by reinforcement, recombination is a major barrier to the formation of new species, primarily because it opposes the establishment of linkage disequilibrium. Here we show that in both the Felsenstein (1981) and Kirkpatrick (1982) models, a recombination suppressor is able to enhance the processes leading to speciation and increase its own frequency in the population.

Animals↗
PubMed1990

Divergence in emergence time of host races due to differential gene flow.

Differential gene flow between adjacent plant populations, induced by environmental influences on reproductive characters such as flowering time, may increase isolation between them (Stam, 1983). With the aid of a simulation model, an analogous process is demonstrated for populations of phytophagous insects. Allochronic isolation due to differences in host plant phenology can be accentuated in sympatry. Interpretations of divergence between host-associated insect populations should take account of the potential effects of differential gene flow before invoking explanations involving selection.

Alleles↗
PubMed1982

Genetic variation at the alcohol dehydrogenase locus in natural populations of the seaweed fly, Coelopa frigida.

Samples of the seaweed fly, Coelopa frigida, from six populations widely spaced around the English coast were collected during 1974-76 and again in 1979-80. Gene frequencies at the Alcohol dehydrogenase (Adh) locus were found not to vary significantly between sites, nor over the five year period of their study. Genotype distributions are compared with Hardy-Weinberg expectations and show consistent, mostly significant, differences. These results are interpreted in the light of an association between the Adh locus and a chromosomal inversion polymorphism. It is argued that the remarkable geographical uniformity must indicate the presence of strong selection, probably taking the form of heterokaryotypic advantage.

Alcohol Oxidoreductases↗