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Biomedical subjects

R J Hyde

Publications and source records attributed to R J Hyde.

At least 19 recordsLinked to original sources

Identification of critical residues in the active site of porcine membrane-bound aminopeptidase P.

The membrane-bound form of mammalian aminopeptidase P (AP-P; EC 3.4. 11.9) is a mono-zinc-containing enzyme that lacks any of the typical metal binding motifs found in other zinc metalloproteases. To identify residues involved in metal binding and catalysis, sequence and structural information was used to align the sequence of porcine membrane-bound AP-P with other members of the peptidase clan MG, including Escherichia coli AP-P and methionyl aminopeptidases. Residues predicted to be critical for activity were mutated and the resultant proteins were expressed in COS-1 cells. Immunoelectrophoretic blot analysis was used to compare the levels of expression of the mutant proteins, and their ability to hydrolyze bradykinin and Gly-Pro-hydroxyPro was assessed. Asp449, Asp460, His523, Glu554, and Glu568 are predicted to serve as metal ion ligands in the active site, and mutagenesis of these residues resulted in fully glycosylated proteins that were catalytically inactive. Mutation of His429 and His532 also resulted in catalytically inactive proteins, and these residues, by analogy with E. coli AP-P, are likely to play a role in shuttling protons during catalysis. These studies indicate that mammalian membrane-bound AP-P has an active-site configuration similar to that of other members of the peptidase clan MG, which is compatible with either a dual metal ion model or a single metal ion in the active site. The latter model is consistent, however, with the known metal stoichiometry of both the membrane-bound and cytosolic forms of AP-P and with a recently proposed model for methionyl aminopeptidase.

Amino Acid Sequence↗

Molecular identification and characterization of novel human and mouse concentrative Na+-nucleoside cotransporter proteins (hCNT3 and mCNT3) broadly selective for purine and pyrimidine nucleosides (system cib).

The human concentrative (Na(+)-linked) plasma membrane transport proteins hCNT1 and hCNT2 are selective for pyrimidine nucleosides (system cit) and purine nucleosides (system cif), respectively. Both have homologs in other mammalian species and belong to a gene family (CNT) that also includes hfCNT, a newly identified broad specificity pyrimidine and purine Na(+)-nucleoside symporter (system cib) from the ancient marine vertebrate, the Pacific hagfish (Eptatretus stouti). We now report the cDNA cloning and characterization of cib homologs of hfCNT from human mammary gland, differentiated human myeloid HL-60 cells, and mouse liver. The 691- and 703-residue human and mouse proteins, designated hCNT3 and mCNT3, respectively, were 79% identical in amino acid sequence and contained 13 putative transmembrane helices. hCNT3 was 48, 47, and 57% identical to hCNT1, hCNT2, and hfCNT, respectively. When produced in Xenopus oocytes, both proteins exhibited Na(+)-dependent cib-type functional activities. hCNT3 was electrogenic, and a sigmoidal dependence of uridine influx on Na(+) concentration indicated a Na(+):uridine coupling ratio of at least 2:1 for both hCNT3 and mCNT3 (cf 1:1 for hCNT1/2). Phorbol myristate acetate-induced differentiation of HL-60 cells led to the parallel appearance of cib-type activity and hCNT3 mRNA. Tissues containing hCNT3 transcripts included pancreas, bone marrow, trachea, mammary gland, liver, prostate, and regions of intestine, brain, and heart. The hCNT3 gene mapped to chromosome 9q22.2 and included an upstream phorbol myristate acetate response element.

Amino Acid Sequence↗

Identification of a nucleoside/nucleobase transporter from Plasmodium falciparum, a novel target for anti-malarial chemotherapy.

Plasmodium, the aetiologic agent of malaria, cannot synthesize purines de novo, and hence depends upon salvage from the host. Here we describe the molecular cloning and functional expression in Xenopus oocytes of the first purine transporter to be identified in this parasite. This 422-residue protein, which we designate PfENT1, is predicted to contain 11 membrane-spanning segments and is a distantly related member of the widely distributed eukaryotic protein family the equilibrative nucleoside transporters (ENTs). However, it differs profoundly at the sequence and functional levels from its homologous counterparts in the human host. The parasite protein exhibits a broad substrate specificity for natural nucleosides, but transports the purine nucleoside adenosine with a considerably higher apparent affinity (K(m) 0.32+/-0.05 mM) than the pyrimidine nucleoside uridine (K(m) 3.5+/-1.1 mM). It also efficiently transports nucleobases such as adenine (K(m) 0.32+/-0.10 mM) and hypoxanthine (K(m) 0.41+/-0.1 mM), and anti-viral 3'-deoxynucleoside analogues. Moreover, it is not sensitive to classical inhibitors of mammalian ENTs, including NBMPR [6-[(4-nitrobenzyl)thio]-9-beta-D-ribofuranosylpurine, or nitrobenzylthioinosine] and the coronary vasoactive drugs, dipyridamole, dilazep and draflazine. These unique properties suggest that PfENT1 might be a viable target for the development of novel anti-malarial drugs.

Adenine↗

Molecular cloning and expression in COS-1 cells of pig kidney aminopeptidase P.

Aminopeptidase P (AP-P; X-Pro aminopeptidase; EC 3.4.11.9), a key enzyme in the metabolism of the vasodilator bradykinin, has been cloned from a pig kidney cortex cDNA library following the use of the PCR to identify sub-libraries enriched in AP-P clones. The complete primary sequence of the enzyme has been deduced from a full-length cDNA clone. This predicts a protein of 673 amino acids with a cleavable N-terminal signal sequence and six potential N-linked glycosylation sites. A stretch of mainly hydrophobic amino acids at the C-terminus is predicted to co-ordinate the attachment of a glycosyl-phosphatidylinositol (GPI) membrane anchor. Although AP-P is a zinc metallopeptidase, the predicted primary sequence does not contain any recognizable zinc-binding motif. Transient expression of AP-P cDNA in COS-1 cells resulted in enzymic activity characteristic of AP-P, namely apstatin- and EDTA-sensitive hydrolysis of bradykinin and Gly-Pro-Hyp. The expressed protein was recognized as a polypeptide of M(r)91,000 under reducing conditions, following immunoblotting of COS-1 membranes with a polyclonal antibody raised against purified pig kidney AP-P. The presence of a GPI anchor on expressed AP-P was established by demonstrating release of the enzyme from a membrane fraction following treatment with bacterial phosphatidylinositol-specific phospholipase C and its corresponding conversion from an amphipathic to a hydrophilic form, as assessed by phase separation in Triton X-114. Sequence comparisons confirm that AP-P is a member of the proline peptidase family of hydrolytic enzymes and is unrelated in sequence to other brush-border membrane peptidases.

Amino Acid Sequence↗

Detection of degradation of magnetic resonance (MR) images: comparison of an automated MR image-quality analysis system with trained human observers.

RATIONALE AND OBJECTIVES: The perceived need for magnetic resonance (MR) imaging quality control (QC) is occasionally minimized on the assumption that significant errors will be detected by the users. To evaluate the validity of this assumption, we compared the sensitivity of a test object and automated image analysis system for MR imaging QC with the sensitivity of trained human observers by evaluating images that were intentionally degraded. METHODS: Parameters for imaging the test object and normal human volunteers were set to values that decreased the signal-to-noise ratio (SNR), caused distortion, and increased the slice thickness and separation. RESULTS: The human observers were able to detect a 6-13% reduction in the SNR and distortions of more than 15% in human images. They were unable to identify 40% increases in the slice thickness. Automated analysis of test object images was able to detect all image degradations at the minimum levels applied. CONCLUSION: The poor sensitivity of the human observers indicated that degradation, especially spatial measurements, could be significantly in error before being detected through visual analysis of clinical images. These errors would be detected by automated analysis of the test object used. Further investigation is needed to better define the accuracy with which quantitative image-quality analysis predicts the effects of degraded image quality on the ability of human observers to detect subtle abnormalities in clinical images.

Contrast Sensitivity↗

MRI scanner variability studies using a semi-automated analysis system.

Due to the unique design of the Parallel Rod Test Object (PRoTO) and the associated semi-automated analysis program, it was necessary to test it extensively for precision and accuracy, and preliminarily for utility, before its distribution for wider use in MRI system quality control (QC). The test object and analysis program measured the desired quantities reproducibly and they accurately measured predicted changes from intentionally adjusted imaging system parameters, yielding sensitivity of the various test measures to deviation in the system operating parameters. From a single scan of the most recent revision of the test object, multiple quantitative quality control measures were obtained throughout the scanning volume on two MR imaging systems over periods of six and twelve months, respectively. From these and earlier trials, an initial indication was obtained of which performance measures are worth monitoring for QC. This experience suggests that signal-to-noise ratio (SNR) and distortion (including display scale) should be monitored but not necessarily the resolution. The latter was only found to alter at the same time or later than other parameters such as SNR had changed. Slice thickness was found to vary on some units and this measure was also used in normalizing the SNR by voxel volume. SNR, distortion, and resolution measurements using field-echo sequences were less stable than those using spin-echo sequences. Use of this QC program to test a wide variety of image quality measures allowed timely assessment of the long-term variability of the units tested. Long-term variability may become among the most important measures for comparison of system performance and maintenance.(ABSTRACT TRUNCATED AT 250 WORDS)

Artifacts↗

Dynamic contrast: a sensory contribution to palatability.

By focusing on a sensory model for palatability, the "ice-cream effect", we speculate on some principles underlying palatability. We propose that the most highly palatable foods are likely to have higher levels of "dynamic contrast" (moment-to-moment sensory contrast from the everchanging properties of foods manipulated in the mouth). The sensory feature contributing most to dynamic contrast seems to be somatosensation. Texture, for example, over the course of masticating a crunchy food, changes markedly such that each alteration contributes differently and dynamically to sensory contrast. Our purpose herein is to propose that dynamic contrast contributes significantly to palatability of foods and beverages.

Animals↗

Signal-to-noise measures for magnetic resonance imagers.

The signal-to-noise ratio (SNR) in magnetic resonance imaging represents one of the system operating variables that must be determined both for evaluating the performance of different imaging protocols on a particular machine, and for monitoring machine performance as part of a routine quality control (QC) program. Utilizing a phantom and set of automated analysis programs currently under development, this study evaluated several ways of measuring image signal and noise and demonstrated the importance of utilizing measured voxel volumes as opposed to nominal volumes in the calculation of SNR. The NEMA proposed standard for SNR is compared with several other SNR measures and is recommended as the measure to be used in routine SNR reporting. The importance of utilizing other SNR measures in addition to the NEMA proposed standard for routine QC is discussed.

Magnetic Resonance Imaging↗

A simple method of producing parenchymal renograms using parametric imaging.

Standard dynamic renography procedures are used to produce time-activity curves for defined regions of interest around the kidneys. Further analysis of the acquired data using Fitted Retention and Excretion Equations (FREE) to determine single kidney glomerular filtration rate (GFR) and kidney transit time is performed at the Royal Marsden Hospital, Sutton. The disadvantage of these methods is that the renal function is assessed for the whole kidney and not on a regional basis. The aim of this study was to use parametric imaging to extend the standard analysis so that the parenchyma could be identified and analysed separately from the collecting system. The parenchyma pixel time-activity curves have shorter time-to-peak (TTP) values than the collecting system. TTP parametric images were used to set limits on the TTP values and thus define the parenchyma pixels. The time-activity curves from the parenchyma were further analysed using FREE to produce parametric images of both GFR and effective blood volume. Finally, the original dynamic data were re-analysed so that time-activity and FREE curves were generated for the parenchyma alone. A study of 15 patients (30 kidneys) showed that the extended analysis indicated parenchymal isotope clearance. By comparing the time-activity and FREE curves of the whole kidney with those from the parenchyma alone, a more useful analysis of parenchymal function was obtained. This proved to be particularly useful for patients with pelvi-ureteric junction (PUJ) obstruction.

Humans↗

Age and sex effects on taste of sucrose, NaCl, citric acid and caffeine.

A procedure combining forced choice discrimination with intensity scaling served to evaluate taste perception of sucrose, NaCl, citric acid and caffeine in 24 young and 24 geriatric subjects. Each group was divided equally by sex. No overall sex differences occurred for taste discrimination, and suprathreshold taste intensity scaling for sucrose and NaCl did not differ by sex or age. However, young adults generally discriminated lower concentrations of citric acid and caffeine from water blanks than did geriatric subjects. Younger subjects judged suprathreshold concentrations of caffeine significantly more intense, as did young females compared to young males; similarly, young females judged citric acid as stronger than did older males. The present suggest that age and gender are major factors in sour and bitter perception.

Adult↗

Thermistor use to monitor urine flow rates in dogs.

The small size of a new thermistor flowmeter facilitated implantation in ureters in anesthetized dogs. It consisted of a self-heating thermistor bead which was suspended centrally within an open catheter and dissipated heat as a function of fluid velocity. A continuous record of instantaneous flow rate was obtained, since the flowmeter catheter maintained a constant cross-sectional area around the thermistor bead. A continuous record of volume output was obtained simultaneously with an additional measurement technique. Spurt volumes of urine delivered in concert with ureter peristalsis were directly correlated to peak flow rates delineated by the flowmeter.

Animals↗

Anatomy and cannulation of the parotid duct in the dog.

The course of the dog's parotid duct is more complex than previously reported. The newly described features are that the duct has 2 right-angle curves in its terminal part and that it perforates the fascia and mucosa of the cheek between the orbicularis oris and buccinator muscles. The duct does not perforate the buccinator muscle. Based on these findings, a rapid and reliable technique for intubation of the duct was developed.

Animals↗