Biomedical subjects

Pedro Joseph-Nathan

Publications and source records attributed to Pedro Joseph-Nathan.

17 recordsLinked to original sources

PubMed2005

1H, 13C and 15N NMR assignments of phenazopyridine derivatives.

Phenazopyridine hydrochloride (1), a drug in clinical use for many decades, and some derivatives were studied by one- and two-dimensional (1)H, (13)C and (15)N NMR methodology. The assignments, combined with DFT calculations, reveal that the preferred protonation site of the drug is the pyridine ring nitrogen atom. The chemoselective acetylation of phenazopyridine (2) and its influence on the polarization of the azo nitrogen atoms were evidenced by the (15)N NMR spectra. Molecular calculations of the phenazopyridines 2-4 show that the pyridine and phenyl groups are oriented in an antiperiplanar conformation with intramolecular hydrogen bonding between the N-b atom and the C-2 amino group preserving the E-azo stereochemistry.

Carbon Isotopes↗

PubMed2005

Electron ionization mass spectra of indolenines obtained using sector and ion trap mass spectrometers.

The electron impact (EI)-induced fragmentations of 18 indolenines were studied using both double-focusing and ion trap mass spectrometers. The compounds used in this study were synthesized to provide correlations of characteristic fragment ions with specific structural differences. In 2-hydroxyindolenines the hydroxy group was involved in a major fragmentation process by interacting with the ester side chain to generate an alpha,beta-unsaturated gamma-lactone structure, with concomitant loss of the corresponding alcohol. In contrast, loss of an alkyl radical, derived solely from the 2-alkoxy group, is a major primary decomposition process for 2-alkoxyindolenines. EI-MS analyses using sector and ion trap spectrometers resulted in similar fragmentation patterns.

Journal Article↗

PubMed2005

Absolute configuration of the alpha-methylbutyryl residue in longipinene derivatives from Stevia pilosa.

The absolute configuration of the alpha-methylbutyryl residue in (4R,5S,7S,8S,9S,10R,11R,2''S)-7-angeloyloxy-9-hydroxy-8-(alpha-methylbutyryloxy)-longipin-2-en-L-one and (4R,5S,7S,8R,10R,11R,2''S)-7-angeloyloxy-8-(alpha-methylbutyryloxy)- longipin-2-en-L-one was determined by chemical correlation with (S)-(+)-benzyl alpha-methylbutyrate prepared from authentic (S)-(+)-alpha-methylbutyric acid. Both compounds were isolated from the hexane extracts of roots of Stevia pilosa Lag. together with four other longipinene derivatives. The developed correlation method is useful to ascertain the chirality of natural alpha-methylbutyryl esters found in nature and to reinforce the hypotheses on the biogenetic origin of these residues.

Molecular Conformation↗

PubMed2005

Absolute configuration of lippifoliane and africanane derivatives.

The absolute configuration of naturally occurring lippifoliane derivatives isolated from the widely used plant Lippia integrifolia was assigned by analysis of the circular dichroism data in combination with density functional theory minimum energy molecular models of (1S,4R,6S,9S,10R)-lippifolian-1-ol-5-one (1), (4R,9S,10R)-lippifoli-1(6)-en-5-one (2), and (4S,9S,10R)-lippifoli-1(6)-en-4-ol-5-one (3) and application of the octant rule for saturated ketone 1 and the helicity rules for alpha,beta-unsaturated ketones 2 and 3. The results were reinforced by the anomalous dispersion effect observed in the X-ray diffraction analysis of (4S,9S,10R)-4,10,11-tribromo-10,11-seco-lippifoli-1(6)-en-5-one (4) prepared from 2. The biogenetic relationships between lippifolianes 1-3 and africanane derivatives 7-9 and 13 isolated from the same species, together with chiroptical data for africananes isolated from the Hepaticae family, complete a stereochemical scenario in relation to the absolute configuration of africananes from L. integrifolia.

Crystallography, X-Ray↗

PubMed2005

Verticillane derivatives from Bursera suntui and Bursera kerberi.

The stems of Bursera suntui afforded two new verticillane derivatives, (1S,3Z,7E,11S,12S)-(+)-verticilla-3,7-dien-12,20-diol (1) and (1S,3Z,7E,11S,12S)-(+)-verticilla-3,7-dien-12,20-diol 20-acetate (2), together with (1S,3E,7E,11R)-(+)-verticilla-3,7,12(18)-triene (3), (1R,3E,7E,11R,12Z)-(+)-verticilla-3,7,12-triene (4), (1R,7E,11Z)-(-)-verticilla-4(20),7,11-triene (5), and (1S,3E,7E,11S,12S)-(+)-verticilla-3,7-dien-12-ol (6). Compounds 3 and 4 are new enantiomerically pure natural products whose racemic mixtures, derived from synthetic approaches toward the taxane skeleton, were obtained previously. The stems of Bursera kerberi afforded the new (1S,3E,7E,11S,12R)-(+)-verticilla-3,7-dien-12-ol (7) together with 3-5. This is the first time that verticillane derivatives have been isolated from the genus Bursera. Their structures and stereochemistry were elucidated by 1D and 2D NMR data, including COSY, NOESY, HSQC, and HMBC experiments, while the absolute configuration was determined by comparison of the optical rotatory dispersion data with that of recently revised (1S,3E,7E,11S,12S)-(+)-verticilla-3,7-dien-12-ol (6), obtained from Sciadopitys verticillata, and those of (1R,3E,7E,11R,12R)-(-)-verticilla-3,7-dien-12-ol (8) and (1R,3E,7E,11R,12S)-(-)-verticilla-3,7-dien-12-ol (9), isolated from the liverwort Jackiella javanica. The conformational preferences of 1-7 were studied by molecular mechanics modeling employing the Monte Carlo protocol.

Bursera↗

PubMed2004

First seco-C oleananes from nature.

[structure: see text] The triterpenes 8,14-seco-oleana-8(26),13-dien-3beta-ol (1) and its acetyl derivative 2 were isolated from Stevia viscida and Stevia eupatoria, respectively. Their structures were elucidated by 2D NMR, including carbon-carbon connectivity experiments, and confirmed by X-ray diffraction analysis of ketone 3. The absolute configuration was determined by NMR analysis of the Mosher esters of 1. The biogenetic implications of the new substances are discussed.

Crystallography, X-Ray↗

PubMed2004

DFT and NMR parameterized conformation of valeranone.

A Monte Carlo random search using molecular mechanics, followed by geometry optimization of each minimum energy structure employing density functional theory (DFT) calculations at the B3LYP/6-31G* level and a Boltzmann analysis of the total energies, generated accurate molecular models which describe the conformational behavior of the antispasmodic bicyclic sesquiterpene valeranone (1). The theoretical H-C-C-H dihedral angles gave the corresponding 1H, 1H vicinal coupling constants using a generalized Karplus-type equation. In turn, the 3J(H,H) values were used as initial input data for the spectral simulation of 1, which after iteration provided an excellent correlation with the experimental 1H NMR spectrum. The calculated 3J(H,H) values closely predicted the experimental values, excepting the coupling constant between the axial hydrogen alpha to the carbonyl group and the equatorial hydrogen beta to the carbonyl group (J(2beta, 3beta)). The difference is explained in terms of the electron density distribution found in the highest occupied molecular orbital (HOMO) of 1. The simulated spectrum, together with 2D NMR experiments, allowed the total assignment of the 1H and 13C NMR spectra of 1.

Magnetic Resonance Spectroscopy↗

PubMed2004

Conformational evaluation and detailed 1H and 13C NMR assignments of eremophilanolides.

Extensive application of 1D and 2D NMR methodology, combined with molecular modeling, allowed the complete 1H and 13C NMR assignments of eremophilanolides from Senecio toluccanus. Comparison of the experimental 1H, 1H coupling constant values with those generated employing a generalized Karplus-type relationship, using dihedral angles extracted from MMX and DFT calculations, revealed that the epoxidized eremophilanolides 1 and 2 show conformational rigidity at room temperature, whereas molecules 3-6, containing an isolated double bond, are conformationally mobile.

Carbon Isotopes↗

PubMed2004

Conformational insights into furo- and thieno[2,3-b]indolines derived from coupling constants and molecular modeling.

The extent to which conformational preferences of fused heterocyclic five-membered rings change with the nature of the heteroatom (O and S) was investigated in furo- (1, 2) and thieno[2,3-b]indolines (3, 4) by the combined use of 1H NMR spectroscopy and density functional theory (DFT) calculations. In contrast to the behavior observed for pyrroloindolines, the furo- and thienoindolines exist in solution in only one conformer, with structures in the 2E-2T3 (1,2) and 2T3-E (3,4) North/West region of the pseudorotational wheel, and with pseudorotation phase angles (P) of 315.8, 311.6, 337.2 and 331.6 degrees, respectively.

Indoles↗

PubMed2004

Preparation of moreliane-derived volatile sesquiterpenes.

A series of six volatile sesquiterpenes (9-13 and 15) was prepared by thioketalization of (4R,5S,9S,10S,11S)-morel-2-en-1,7-dione (2) and of (4R,5S,7R,9R,11R)-moreli-2,10-dien-7-ol-1-one (3), followed by Raney-nickel desulfurization. The structures of the new substances were determined by 1D and 2D NMR including COSY, NOESY, HSQC, and HMBC experiments. The geometry of (3S,4R,5R,9S,10R,11S)-morelian-7-one (11), which exhibited an intense woody odor, was calculated by density functional theory at the B3LYP/6-31G level.

Hydrolysis↗

PubMed2003

Aromatic bromination versus oxidation of indolylmalonates by bromine.

The reactions of 5-substituted indolylmalonates (2a-e), carrying an electron-withdrawing group at the N(1) position, with bromine in CCl(4) or AcOH are reported. These substrates undergo oxidation in competition with the well-known aromatic bromination. Under the two sets of conditions, with parent indolylmalonate (2a), chemospecific oxidation is observed, whereas with 5-hydroxyindolylmalonate (2c), bromination at the 4- and 6-position is the dominating reaction. Investigation of the products composition of several 5-substituted indolylmalonates revealed the following trend: with a 5-substituted electron-withdrawing group like fluorine, the indolylmalonate undergoes oxidation rather than bromination. In contrast, with a 5-substituted electron-donating group, like a hydroxyl group, the ring bromination occurs preferentially over the oxidation. When the 5-substituent is an alkoxyl group, a significant amount of brominated-oxidized products is obtained. Monitoring the oxidation reaction by mass spectrometry allowed the characterization of the 2-bromoindolylidenemalonate intermediate. A bromonium ion is considered as possible pathway in the formation of this intermediate. The conformation of unsymmetrical methoxyl and benzyloxyl substituents was determined from (1)H NMR spectra, single-crystal X-ray diffraction and ab initio calculations.

Journal Article↗

PubMed2003

Carbon-13 CP-MAS nuclear magnetic resonance studies of teas.

13C CP-MAS NMR spectra of green and black tea were obtained and assigned based on the solid-state NMR spectra of tropolone, (+)-catechin hydrate, gallic acid, caffeine and flavone derivatives. The peak shape and chemical shifts observed for carbonyl carbons in CP-MAS spectra of teas indicate the existence of different chemical species, mainly free phenollic acids and ester derivatives of flavonoids. The peak patterns allow to establish differences between both teas.

Biflavonoids↗

PubMed2003

cis,cis-Germacranolides and melampolides from Mikania thapsoides.

The aerial parts of Mikania thapsoides afforded six new cis,cis-germacranolide-type sesquiterpene lactones (1-6), of which three (1-3) have an unusual 3,4-epoxy function, and also afforded two new melampolides (7 and 8). All compounds have a trans C-8 lactone ring closure. Their structures were elucidated using 1D and 2D NMR measurements, and the absolute configuration of 1 was determined using the Mosher ester method.

Argentina↗

PubMed2002

Efficient formal total synthesis of physostigmine and physovenine: conformational analysis of key intermediates.

An efficient route for the formal total synthesis of physostigmine (1) and physovenine (2), alkaloids from 5-methoxyindole-3-acetonitrile, through a Grignard reagent 1,4-addition, is described. 2-Hydroxyindolenine 5, the key advanced intermediate for the synthetic targets, was converted either to esermethole (12) via a high-yielding (28%) seven-step sequence or to the C-ring oxygenated analogue 15 in a five-step sequence and 23% overall yield. (1)H NMR and molecular modeling analyses of esermethole (12) and the furoindolines 13 and 15 were used to deconvolute weighted time-average vicinal coupling constants to provide definite solution-state conformational preferences in CD(2)Cl(2) solvent.

Fabaceae↗

PubMed2002

Jiquilpane hydrocarbon skeleton generated by two successive Wagner-Meerwein rearrangements of longipinane derivatives.

The molecular rearrangement of (1R,3S,4S,5S,7S,8R,9S,10R,11R)-7,8,9-triacetyloxylongipinan-1-ol (4) under acidic conditions afforded (1S,4R,5R,7S,8R,9S,10S)-7,8,9-triacetyloxyuruap-3(12)-ene (5), while 6, the C(3)-stereoisomer of 4, after two consecutive Wagner-Meerwein rearrangements followed by two 1,2-hydride migrations, afforded (4R,5R,7S,8S,9S,10S,11S)-7,8,9-triacetyloxyjiquilp-3(12)-ene (7), which possesses a new hydrocarbon skeleton. The structures of the new substances were elucidated by 1D and 2D NMR data in combination with X-ray diffraction analyses of the uruapane, longipinane, and jiquilpane derivatives 5, 6, and 14, respectively. Molecular modeling at the ab initio level was used to study the reaction mechanisms, while deuterium labeling was employed to confirm the C-C bond migrations and the hydride shifts.

Models, Molecular↗

PubMed2002

Quirogane, prenopsane, and patzcuarane skeletons obtained by photochemically induced molecular rearrangements of longipinene derivatives.

Ultraviolet irradiation of (1R,3S,4S,5S,10R,11R)-1-acetyloxy-7-oxolongipin-8-ene (6), prepared from longipinene diesters isolated from Stevia salicifolia, afforded the new quirogane (7) and prenopsane (8) derivatives, as the major products, together with the minor secondary photoproduct (1R,3R,5R,8S,11S)-1-acetyloxy-7-oxopatzcuar-9-ene (9), which possesses a novel tricyclic sesquiterpene skeleton. The stereostructures of the new compounds 7-9 were mainly determined by NMR techniques including COSY, HSQC, HMBC, and NOESY in combination with molecular modeling obtained by density functional theory calculations. A reaction mechanism accounting for the observed transformations is proposed.

Magnetic Resonance Spectroscopy↗

PubMedDate not supplied

Stereochemical assignment of naturally occurring 2,3-epoxy-2-methylbutanoate esters.

A method to determine the absolute configuration of 2,3-epoxy-2-methylbutanoate ester residues in natural products is presented, based on (i) the reduction of the ester function to yield a 2-methyl-1,2-butanediol, (ii) esterification of the obtained primary alcohol with either (R)-(+)- or (S)-(-)-Mosher's acid to afford the corresponding Mosher's ester, and (iii) 1H-NMR spectral comparison of the final product with that of the Mosher's esters prepared from 2-methyl-1,2-butanediols of known stereochemistry.

Biological Factors↗