Biomedical subjects

Paul V R Schleyer

Publications and source records attributed to Paul V R Schleyer.

15 recordsLinked to original sources

PubMed2006

Planar tetracoordinate carbon atoms centered in bare four-membered rings of late transition metals.

Planar tetracoordinate carbons (ptC's) can be stabilized by four-membered ring perimeters composed of four bare transition metal atoms. DFT analyses of the molecular orbitals, electronic structures, energies, and magnetic properties of these CM4 species (where M represents isoelectronic combinations of Cu, Ni, Ag, and Pd) reveal striking similarities with main group metal ptC analogues (e.g., CAl2Si2, CAl4Na-, and C5Li2). While the CCu4(2+), CAg4(2+), and CNiCu3+ ions have the largest HOMO-LUMO separations, CCu4(2+) is the best candidate for detection by gas-phase photoelectron spectroscopy.

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PubMed2006

Molecular oxygen dianions trapped in lithium cluster cages.

In an important recent report, Coles and Hitchcock (Chem. Commun. 2005, 3165) have synthesized a unique compound of the form Li9O2(hpp)7, with an O2 unit encapsulated in the Li cluster. The group hpp is the bicyclic guanidinate 1,3,4,6,7,8-hexahydropyrimido[1,2-a]pyrimidinate. Coles and Hitchcock raise the interesting possibility that the trapped species is the O2 dianion. We have theoretically investigated (with full geometry optimization) the structural, vibrational, and electronic properties of this fascinating system with 165 atoms. Every indication supports the qualitative conclusion that this system is best represented as an O2 dianion embedded in a Li cluster. Several smaller model systems, including replacement of the hpp ligands by Cl atoms, are also examined and provide some interesting comparisons.

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PubMed2006

Popular theoretical methods predict benzene and arenes to be nonplanar.

Planar (D6h) benzene has one (1181i cm-1, b2g) and three (1844i cm-1, b2g; 462i cm-1, e2u) imaginary vibrational frequencies at the MP2/6-311++G(d,p) and MP2/6-311++G levels of theory, respectively! The spurious frequencies correspond to D3d chair (b2g) and C2v boat (e2u) out-of-plane distortions. Numerous, similar examples where planar benzene is not a minimum are documented at the MP2, MP3, and CISD levels with popular Pople-type basis sets, while the RHF, B3LYP, and BLYP methods exhibit no such problems. We show that, in the sp and spd atomic-orbital limits of MP2 theory, benzene is nonplanar. The observed failure of electron correlation methods with unbalanced basis sets to predict planar minima is not unique to benzene but is also found for other pi-delocalized molecules, including pyridine, naphthalene, anthracene, the cyclopentadienyl and indenyl anions, and the tropylium cation. Detailed mathematical analysis reveals that an insidious, geometry-dependent, two-electron basis set incompleteness error (BSIE) is responsible for the problem and that balanced, correlation-consistent constructions of basis sets are generally required to ensure reliable predictions for arenes with correlated wave functions.

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PubMed2006

La2@C72 and Sc2@C72: computational characterizations.

The La2@C72 and Sc2@C72 metallofullerenes have been characterized by systematic density functional computations. On the basis of the most stable geometry of 39 C72 hexaanions and the computed energies of the best endofullerene candidates, the experimentally isolated La2@C72 species was assigned the structure coded #10611. The good agreement between the computed and the experimental 13C chemical shifts for La2@C72 further supports the literature assignment (Kato, H.; Taninaka, A.; Sugai, T.; Shinohara, H. J. Am. Chem. Soc. 2003, 125, 7782). The geometry, IR vibrational frequencies, and 13C chemical shifts of Sc2@C72 were predicted to assist its future experimental characterization.

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PubMed2006

Octahedral and tetrahedral coinage metal clusters: is three-dimensional d-orbital aromaticity viable?

The first quantitative evidence for the viability of three-dimensional aromatic clusters involving d-orbitals in pseudo-octahedral coinage metal cages M(6)Li(2) (M = Cu, Ag, Au) as well as in tetrahedral coinage metal cages M'(4)Li(4) (M' = Cu, Ag) was obtained computationally. These cages exhibit many features similar to those of their square planar M(4)Li(2) analogues. The large negative nucleus-independent chemical shifts (NICS) at the cage centers indicate three-dimensional delocalization. This diatropic character arises mostly from d-orbital delocalization combined with substantial contributions from the lowest-valence orbitals. The bonding molecular orbitals of the pseudo-octahedral clusters M(6)Li(2) (M = Cu, Ag, Au) are analogous to those in similar octahedral clusters involving p-orbital delocalization (e.g., B(6)H(6)(2-)). The M'(4)Li(4) clusters exhibit two isomeric forms: metal tetrahedral cages tetracapped by lithium cations on the outside [(M'(4)).4Li] and lithium tetrahedra on the inside capped by coinage metal atoms on each of the four faces [(Li(4)).4M]. Whereas the (M'(4)).4Li type structure is preferred for copper, gold and silver favor the (Li(4)).4M arrangement. NBO-NICS analysis shows that the large diatropic character in (M'(4)).4Li structures is due to the favorable contribution from both s- and d-orbitals, whereas the small NICS values in the center of (Li(4)).4M are due only to the diatropic contributions from the s-orbitals.

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PubMed2005

Vibrational spectroscopy and structures of Ni+(C2H2)(n) (n =1-4) complexes.

Nickel cation-acetylene complexes of the form Ni(+)(C(2)H(2))(n), Ni(+)(C(2)H(2))Ne, and Ni(+)(C(2)H(2))(n)Ar(m) (n = 1-4) are produced in a molecular beam by pulsed laser vaporization. These ions are size-selected and studied in a time-of-flight mass spectrometer by infrared laser photodissociation spectroscopy in the C-H stretch region. The fragmentation patterns indicate that the coordination number is 4 for this system. The n = 1-4 complexes with and without rare gas atoms are also investigated with density functional theory. The combined IR spectra and theory show that pi-complexes are formed for the n = 1-4 species, causing the C-H stretches in the acetylene ligands to shift to lower frequencies. Theory reveals that there are low-lying excited states nearly degenerate with the ground state for all the Ni(+)(C(2)H(2))(n) complexes. Although isomeric structures are identified for rare gas atom binding at different sites, the attachment of rare gas atoms results in only minor perturbations on the structures and spectra for all complexes. Experiment and theory agree that multiple acetylene binding takes place to form low-symmetry structures, presumably due to Jahn-Teller distortion and/or ligand steric effects. The fully coordinated Ni(+)(C(2)H(2))(4) complex has a near-tetrahedral structure.

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PubMed2005

Effects of fluorine on the structures and energetics of the propynyl and propargyl radicals and their anions.

[reaction: see text] The adiabatic electron affinity (EA(ad)) of the CH(3)-C[triple bond]C(*) radical [experiment = 2.718 +/- 0.008 eV] and the gas-phase basicity of the CH(3)-C[triple bond]C:(-) anion [experiment = 373.4 +/- 2 kcal/mol] have been compared with those of their fluorine derivatives. The latter are studied using theoretical methods. It is found that there are large effects on the electron affinities and gas-phase basicities as the H atoms of the alpha-CH(3) group in the propynyl system are substituted by F atoms. The predicted electron affinities are 3.31 eV (FCH(2)-C[triple bond]C(*)), 3.86 eV (F(2)CH-C[triple bond]C(*)), and 4.24 eV (F(3)C-C[triple bond]C(*)), and the predicted gas-phase basicities of the fluorocarbanion derivatives are 366.4 kcal/mol (FCH(2)-C[triple bond]C:(-)), 356.6 kcal/mol (F(2)CH-C[triple bond]C:(-)), and 349.8 kcal/mol (F(3)C-C[triple bond]C:(-)). It is concluded that the electron affinities of fluoropropynyl radicals increase and the gas-phase basicities decrease as F atoms sequentially replace H atoms of the alpha-CH(3) in the propynyl system. The propargyl radicals, lower in energy than the isomeric propynyl radicals, are also examined and their electron affinities are predicted to be 0.98 eV ((*)CH(2)-C[triple bond]CH), 1.18 eV ((*)CFH-C[triple bond]CH), 1.32 eV ((*)CF(2)-C[triple bond] CH), 1.71 eV ((*)CH(2)-C[triple bond]CF), 2.05 eV ((*)CFH-C[triple bond]CF), and 2.23 eV ((*)CF(2)-C[triple bond]CF).

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PubMed2005

Strikingly long C...C distances in 1,2-disubstituted ortho-carboranes and their dianions.

Neutral and especially dianionic 6- and 12-vertex closo ortho-carboranes (o-carboranes) 1,2-R2-1,2-C2BnHn (R = H, CH3, NH2, OH, F, SiH3, PH2, SH, Cl, as well as e-, CH2-, NH-, O-, SiH2-, PH-, and S- exhibit extremely large variations (over 1 A!) of the cage CC distances, from 1.626 to 2.638 A, at the B3LYP/6-31G//B3LYP/6-31G DFT level. These CC "bond lengths," among the longest ever reported, generally are greater in the icosahedral than those in the corresponding octahedral systems and depend strongly on the substituents. While 1,2-(NH2)2-1,2-C2B10H10 has the longest Cc...Cc separation in neutral species (1.860 A), Cc...Cc distances can be much larger in the corresponding dianions. These range from 1.823 A (R- = e-) to 2.638 A (R- = CH2-) for 1,2-(R-)2-1,2-C2B10H10 and from 1.626 A (R- = SiH2-) to 3.099 A (R- = NH-) for 1,2-(R-)2-1,2-C2B4H4. Remarkably, there is no abrupt discontinuity over the entire range of CC lengths. Consequently, the relationship between the gradual changes in the distances and the nature of the bonding was analyzed by means of the form of the Kohn-Sham orbitals, the Wiberg Cc...Cc bond indices, and Bader AIM method. Cluster carboranes, and possibly other heteroboranes, thus appear to offer unique opportunities for modulating Cc...Cc distances.

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PubMed2005

Evidence for d orbital aromaticity in square planar coinage metal clusters.

Quantitative evidence for the existence of aromaticity involving the d orbitals of transition metals is provided for the first time. The doubly bridged square planar (D(4)(h)()) coinage metal clusters (M(4)Li(2), M = Cu (1), Ag (2), and Au (3)) are characterized as aromatic by their substantial nucleus independent chemical shifts (NICS) values in the centers (-14.5, -14.1, and -18.6, respectively). Nevertheless, the participation of p orbitals in the bonding (and cyclic electron delocalization) of 1-3 is negligible. Instead, these clusters benefit strongly from the delocalization of d and to some extent s orbitals. The same conclusion applies to Tsipis and Tsipis' H-bridged D(4)(h)() Cu(4)H(4) ring (4). Canonical MO-NICS analysis of structures 1-3 shows the total diatropic d orbital contributions to the total NICS to be substantial, although the individual contributions of the five sets of filled d orbitals vary. The d orbital aromaticity of Cu(4)Li(2) also is indicated by its atomization energy, 243.2 kcal/mol, which is larger than Boldyrev's doubly (sigma and pi) aromatic Al(4)Li(2) (215.9 kcal/mol).

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PubMed2005

Structures and energies of isolobal (BCO)n and (CH)n cages.

The structures and energies of isolobal (CH)n and (BCO)n polyhedral species, computed at the B3LYP density functional theory level, reveal contrasts in behavior. The strain energies of the (BCO)n cages are much smaller. Also unlike the (CH)n cages, the most stable (BCO)n polyhedra (n > or = 10) prefer structures with the largest number of three-membered rings. The planar (or nearly planar) faces of the cage systems were modeled by computations on planar, isoelectronic (CH2)n (Dnh) and (HBCO)n (Cnv) rings. While the strain energies of all the planar carbon rings, relative to the most stable D5h (CH2)5, were large, the strain energies of all the planar (HBCO)n (Cnv) rings were small. Remarkably, the three-membered (HBCO)3 (C3v) ring was the most stable. Finally, large (BCO)n systems prefer tubelike rather than cage structures.

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PubMed2005

Structural trends in transition metal cation-acetylene complexes revealed through the C-H stretching fundamentals.

Metal cation-acetylene complexes (M = V, Fe, Co, Ni) are produced in molecular beams and studied with infrared photodissociation spectroscopy in the C-H stretching region. Each complex has two vibrational bands corresponding to the symmetric and asymmetric stretches of acetylene that are shifted to the red of these vibrations in the isolated acetylene molecule. Density functional theory reveals the sources of the red-shifted vibrations and their relative magnitudes. Fe+, Co+, and Ni+ form pi-complexes with acetylene, while V+(C2H2) is a metallacycle.

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PubMed2004

Aromaticity of four-membered-ring 6pi-electron systems: N2S2 and Li2C4H4.

N(2)S(2) is a four-membered-ring system with 6pi electrons. While earlier proposals considered N(2)S(2) to be aromatic, recent electronic structure calculations claimed that N(2)S(2) is a singlet diradical. Our careful reexamination does not support this assertion. N(2)S(2) is closed shell and aromatic since it satisfies all three generally accepted criteria for aromaticity: energetic (stability), structural (planarity with equal bond lengths), and magnetic (negative nucleus-independent chemical shift due to the pi electrons). These characteristics as well as the electronic structure of N(2)S(2) are compared with those for an isoelectronic pi system, Li(2)C(4)H(4), motivated by theoretical and recent experimental investigations that confirmed its aromaticity. However, N(2)S(2) and Li(2)C(4)H(4) are both essentially 2pi-electron aromatic systems with a formal N-S (C-C) bond order of 1.25 even though they both have 6pi electrons. This is because four of the six pi electrons occupy the nonbonding pi HOMOs and only two electrons participate effectively in the aromatic stabilization. However, wave function analysis shows relatively large LUMO occupation numbers; this antibonding effect can be said to reduce the aromatic character by approximately 7% and 4% for N(2)S(2) and Li(2)C(4)H(4), respectively.

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PubMed2004

Binding energies of small lithium clusters (Li(n)) and hydrogenated lithium clusters (Li(n)H).

Large coupled cluster computations utilizing the Dunning weighted correlation-consistent polarized core-valence (cc-pwCVXZ) hierarchy of basis sets have been conducted, resulting in a panoply of internally consistent geometries and atomization energies for small Li(n) and Li(n)H (n=1-4) clusters. In contrast to previous ab initio results, we predict a monotonic increase in atomization energies per atom with increasing cluster size for lithium clusters, in accordance with the historical Knudsen-effusion measurements of Wu. For hydrogenated lithium clusters, our results support previous theoretical work concerning the relatively low atomization energy per atom for Li(2)H compared to LiH and Li(3)H. The CCSD(T)/cc-pwCVQZ atomization energies for LiH, Li(2)H, Li(3)H, and the most stable isomer of Li(4)H, including zero-point energy corrections, are 55.7, 79.6, 113.0, and 130.6 kcal/mol, respectively. The latter results are not consistent with the most recent experiments of Wu.

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PubMed2003

On the viability of small endohedral hydrocarbon cage complexes: X@C4H4, X@C8H8, X@C8H14, X@C10H16, X@C12H12, AND X@C16H16.

Small hydrocarbon complexes (X@cage) incorporating cage-centered endohedral atoms and ions (X = H(+), H, He, Ne, Ar, Li(0,+), Be(0,+,2+), Na(0,+), Mg(0,+,2+)) have been studied at the B3LYP/6-31G(d) hybrid HF/DFT level of theory. No tetrahedrane (C(4)H(4), T(d)()) endohedral complexes are minima, not even with the very small hydrogen atom or beryllium dication. Cubane (C(8)H(8), O(h)()) and bicyclo[2.2.2]octane (C(8)H(14), D(3)(h)()) minima are limited to encapsulating species smaller than Ne and Na(+). Despite its intermediate size, adamantane (C(10)H(16), T(d)()) can enclose a wide variety of endohedral atoms and ions including H, He, Ne, Li(0,+), Be(0,+,2+), Na(0,+), and Mg(2+). In contrast, the truncated tetrahedrane (C(12)H(12), T(d)()) encapsulates fewer species, while the D(4)(d)() symmetric C(16)H(16) hydrocarbon cage (see Table of Contents graphic) encapsulates all but the larger Be, Mg, and Mg(+) species. The host cages have more compact geometries when metal atoms, rather than cations, are inside. This is due to electron donation from the endohedral metals into C-C bonding and C-H antibonding cage molecular orbitals. The relative stabilities of endohedral minima are evaluated by comparing their energies (E(endo)) to the sum of their isolated components (E(inc) = E(endo) - E(cage) - E(x)) and to their exohedral isomer energies (E(isom) = E(endo) - E(exo)). Although exohedral binding is preferred to endohedral encapsulation without exception (i.e., E(isom) is always exothermic), Be(2+)@C(10)H(16) (T(d)(); -235.5 kcal/mol), Li(+)@C(12)H(12) (T(d)(); 50.2 kcal/mol), Be(2+)@C(12)H(12) (T(d)(); -181.2 kcal/mol), Mg(2+)@C(12)H(12) (T(d)(); -45.0 kcal/mol), Li(+)@C(16)H(16) (D(4)(d)(); 13.3 kcal/mol), Be(+)@C(16)H(16) (C(4)(v)(); 31.8 kcal/mol), Be(2+)@C(16)H(16) (D(4)(d)(); -239.2 kcal/mol), and Mg(2+)@C(16)H(16) (D(4)(d)(); -37.7 kcal/mol) are relatively stable as compared to experimentally known He@C(20)H(20) (I(h)()), which has an E(inc) = 37.9 kcal/mol and E(isom) = -35.4 kcal/mol. Overall, endohedral cage complexes with low parent cage strain energies, large cage internal cavity volumes, and a small, highly charged guest species are the most viable synthetic targets.

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PubMed2002

2-Pyridinethiol/2-pyridinethione tautomeric equilibrium. A comparative experimental and computational study.

The gas phase and solvent dependent preference of the tautomerization between 2-pyridinethiol (2SH) and 2-pyridinethione (2S) has been assessed using variable temperature Fourier transform infrared (FTIR) experiments, as well as ab initio and density functional theory computations. No spectroscopic evidence (nu(S)(-)(H) stretch) for 2SH was observed in toluene, C(6)D(6), heptane, or methylene chloride solutions. Although, C(s)() 2SH is 2.61 kcal/mol more stable than C(s)() 2S (CCSD(T)/cc-pVTZ//B3LYP/6-311+G(3df,2p)+ZPE), cyclohexane solvent-field relative energies (IPCM-MP2/6-311+G(3df,2p)) favor 2S by 1.96 kcal/mol. This is in accord with the FTIR observations and in quantitative agreement with the -2.6 kcal/mol solution (toluene or C(6)D(6)) calorimetric enthalpy for the 2S/2SH tautomerization favoring the thione. As the intramolecular transition state for the 2S, 2SH tautomerization (2TS) lies 25 (CBS-Q) to 30 kcal/mol (CCSD/cc-pVTZ) higher in energy than either tautomer, tautomerization probably occurs in the hydrogen bonded dimer. The B3LYP/6-311+G(3df,2p) optimized C(2) 2SH dimer is 10.23 kcal/mol + ZPE higher in energy than the C(2)(h)() 2S dimer and is only 2.95 kcal/mol + ZPE lower in energy than the C(2) 2TS dimer transition state. Dimerization equilibrium measurements (FTIR, C(6)D(6)) over the temperature range 22-63 degrees C agree: K(eq)(298) = 165 +/- 40 M(-)(1), DeltaH = -7.0 +/- 0.7 kcal/mol, and DeltaS = -13.4 +/- 3.0 cal/(mol deg). The difference between experimental and B3LYP/6-311+G(3df,2p) [-34.62 cal/(mol deg)] entropy changes is due to solvent effects. The B3LYP/6-311+G(3df,2p) nucleus independent chemical shifts (NICS) are -8.8 and -3.5 ppm 1 A above the 2SH and 2S ring centers, respectively, and the thiol is aromatic. Although the thione is not aromatic, it is stabilized by the thioamide resonance. In solvent, the large 2S dipole, 2-3 times greater than 2SH, favors the thione tautomer and, in conclusion, 2S is thermodynamically more stable than 2SH in solution.

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