Biomedical subjects

Patrizia Calaminici

Publications and source records attributed to Patrizia Calaminici.

5 recordsLinked to original sources

PubMed2006

2-[(R-phenyl)amine]-1,4-naphthalendiones as photosystem I electron acceptors: structure-activity relationship of m- and p-PAN compounds with QSAR analysis.

Nineteen 2-[(R-phenyl)amine]-1,4-naphthalendione derivatives (PAN) were tested on spinach thylakoids for their activity as electron acceptors. These molecules act as photosystem I electron acceptors in the micromolar range. AC(50) values varied from 5 nM to 24 microM. QSAR analysis revealed a linear correlation of the m-PAN derivative log [1/AC(50)] with the energy difference of the LUMO and HOMO orbitals. The biological activity of p-PAN derivatives correlates linearly with structural parameters. Electron affinity is being the most important. The half wave I potential values (E(1/2)) of PAN compounds (from -213 to -569 mV vs. NHE) match with the mid-point potentials of the A(0) to F(X) niche of PSI electron transport carriers. The logP values of PAN derivatives were 3.35 and 3.88, indicating that they are hydrophobic compounds. Therefore PAN compounds accept electrons at the hydrophobic A(0) to F(X) niche of PSI.

Adenosine Triphosphate↗

PubMed2006

Parallelization of the deMon2k code.

The parallelization of the LCGTO-KS-DFT code deMon2k is presented. The parallelization of the three-center electron repulsion integrals, the numerical integration using a direct grid algorithm and the matrix multiplication and diagonalization are described. The efficiency of the parallelization is analyzed by selected benchmark calculations. It is shown that geometry optimizations of systems with more than 8,000 basis functions are feasible on cluster architectures.

Algorithms↗

PubMed2005

Separation of sigma and pi energies.

This work presents an all-electron density functional theory implementation of the separation of sigma and pi energies. On the basis of the separation of the electronic density, rho, into sigma and pi parts, an ansatz for the separation of the exchange-correlation energy is proposed. The behavior of the sigma and pi energy parts in benzene is investigated under different distortions. The effect of local and nonlocal functionals on the separation of the exchange-correlation energy is studied, too.

Journal Article↗

PubMed2004

Structures and vibrations of Nb3O and Nb3O-: a density functional study.

Density functional calculations of neutral and anionic niobium trimer monoxides are presented. The calculations were performed employing scalar quasirelativistic effective core potentials. In order to test the accuracy of the used effective core potentials in the framework of density functional theory the pulsed field ionization-zero electron kinetic energy photoelectron spectrum of Nb(3)O was simulated and compared to experiment. Different isomers of Nb(3)O and Nb(3)O(-) were studied in order to determine the ground state structures. For both neutral and anionic systems a planar C(2v) structure with an edge-bound oxygen atom was found as a ground state. Equilibrium structure parameters, harmonic frequencies, and adiabatic electron affinity are reported. The calculated electron affinity and frequencies are in good agreement with the available experimental data obtained recently from vibrationally resolved negative ion photoelectron spectroscopy.

Journal Article↗

PubMed2002

Mechanism for large first hyperpolarizabilities of phosphonic acid stilbene derivatives.

This paper presents calculations of dipole moments (mu), static polarizabilities (alpha), and first hyperpolarizabilities (beta) of phosphonic acid stilbene derivatives calculated in the framework of density functional theory. These calculations were performed using a finite field approach implemented in the density functional program ALLCHEM and were of an all-electron type using local exchange-correlation functional and specially designed basis sets. The molecular structures have been fully optimized using the semiempirical program MSINDO. Some of the investigated stilbenes have been synthesized very recently while others are described for the first time. Donor and acceptor groups of these analogues have been modified and the influence of these changes on the first hyperpolarizabilities has been investigated. This work demonstrates that the nonlinear optical response beta of these compounds increases dramatically when the acceptor moiety is displaced by analogues containing alkali metal groups. A general mechanism for the design of novel nonlinear optical materials with large first hyperpolarizabilities is described.

Journal Article↗