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Biomedical subjects

Padmini Srinivasan

Publications and source records attributed to Padmini Srinivasan.

2 recordsLinked to original sources

Categorization of sentence types in medical abstracts.

This study evaluated the use of machine learning techniques in the classification of sentence type. 7253 structured abstracts and 204 unstructured abstracts of Randomized Controlled Trials from MedLINE were parsed into sentences and each sentence was labeled as one of four types (Introduction, Method, Result, or Conclusion). Support Vector Machine (SVM) and Linear Classifier models were generated and evaluated on cross-validated data. Treating sentences as a simple "bag of words", the SVM model had an average ROC area of 0.92. Adding a feature of relative sentence location improved performance markedly for some models and overall increasing the average ROC to 0.95. Linear classifier performance was significantly worse than the SVM in all datasets. Using the SVM model trained on structured abstracts to predict unstructured abstracts yielded performance similar to that of models trained with unstructured abstracts in 3 of the 4 types. We conclude that classification of sentence type seems feasible within the domain of RCT's. Identification of sentence types may be helpful for providing context to end users or other text summarization techniques.

Abstracting and Indexing↗

Exploring text mining from MEDLINE.

We present a text mining application that exploits the MeSH heading subheading combinations present in MEDLINE records. The process begins with a user specified pair of subheadings. Co-occurring concepts qualified by these subheadings are regarded as being conceptually related and thus extracted. A parallel process using SemRep, a linguistic tool, also extracts conceptually related concept pairs from the titles of MEDLINE records. The pairs extracted via MeSH and the pairs extracted via SemRep are compared to yield a high confidence subset. These pairs are then combined to project a summary view associated with the selected subheading pair. For each concept the "diversity" in the set of related concepts is assessed. We suggest that this summary and the diversity indicators will be useful a health care practitioner or researcher. We illustrate this application with the subheading pair "drug therapy" and "therapeutic use" which approximates the treatment relationship between Drugs and Diseases.

Drug Therapy↗