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Biomedical subjects

P M Rentzepis

Publications and source records attributed to P M Rentzepis.

At least 19 recordsLinked to original sources
PubMed2005

Photolysis of CBr4 and its transient solvent stabilized (CBr3+//Br-)solv ion pair.

In this paper we describe the mechanism of the photodissociation of CBr4 in various solvents. We have monitored and identified the intermediate species and determined the growth and decay rates of the excited states and metastable species formed during the photodissociation process by means of ultrafast time-resolved spectroscopy. On the basis of the experimental data presented in this paper, the observed transient spectra and species have been assigned to the stabilized solvated ion pair (CBr3+//Br-)solv.

Journal Article↗
PubMed2003

Nonvolatile read-out molecular memory.

A versatile molecule is described that performs as a nondestructible read-out optical-storage molecular memory. This molecular memory is composed of two distinct molecules that are chemically bonded to each other to form a single molecule with unique properties. One component is a photochromic fulgimide, and the other is a strongly fluorescing oxazine dye. This composite molecule was specifically designed and synthesized to display, under specific conditions, both the photochromic functions of the first component and the fluorescence properties of the dye. To store information, the polar, closed form of the photochromic component is illuminated with 530-nm light, which converts it to the open, nonpolar form. The information is accessed by excitation at the 650-nm band of the oxazine dye component, causing the dye to fluoresce. However, the dye emits intense fluorescence under a nonpolar environment, which is attained only when the fulgimide component is in its open, nonpolar structure. The ultrafast kinetics, spectroscopy, and mechanism of the photoreaction of this molecule and its photoinduced intermediates have been measured, and fluorescence quantum yields and cross sections were determined.

Coloring Agents↗
PubMed2000

Dynamical principles in biological processes: a model of charge migration in proteins and DNA.

The generalized master equations (GMEs) that contain multiple time scales have been derived quantum mechanically. The GME method has then been applied to a model of charge migration in proteins that invokes the hole hopping between local amino acid sites driven by the torsional motions of the floppy backbones. This model is then applied to analyze the experimental results for sequence-dependent long-range hole transport in DNA reported by Meggers et al. [Meggers, E., Michel-Beyerle, M. E., & Giese, B. (1998) J. Am. Chem. Soc. 120, 12950-12955]. The model has also been applied to analyze the experimental results of femtosecond dynamics of DNA-mediated electron transfer reported by Zewail and co-workers [Wan, C., Fiebig, T., Kelley, S. O., Treadway, C. R., Barton, J. K. & Zewail, A. H. (1999) Proc. Natl. Acad. Sci. USA 96, 6014-6019]. The initial events in the dynamics of protein folding have begun to attract attention. The GME obtained in this paper will be applicable to this problem.

Base Sequence↗
PubMed1998

Dynamical principles in biological processes.

The purpose of this paper is to propose certain dynamical principles in biological systems, which can be used to explain the effectiveness of charge transfer or excitation transfer in biological systems. Some of these systems are accessible experimentally.

Electron Transport↗
PubMed1984

Spectroscopic characterization of nitrated purple membranes.

Light-adapted purple membranes were modified with tetranitromethane by a new light-dependent procedure at pH 5.5 which results in a blue-shifted chromophore absorbing at 530nm. This modification affects two aromatic residues. The modified bacteriorhodopsin's ground state chromophore structure is probed by circular dichroism and resonance raman spectroscopy while its photocycle is studied by laser-flash photolysis in the picosecond, microsecond and millisecond time scale. After nitration, the main findings are 1) Interactions between neighboring chromophores are lost, 2) Modified bacteriorhodopsin contains a conformationally changed chromophore but retains a protonated Schiff's base as evidenced by a resonance raman band at 1652 cm-1, 3) A red-shifted intermediate is formed in less than 10 ps after laser excitation, 4) The decay of the M-intermediate is not significantly affected whereas the rise time of the intermediate is enhanced about two fold. These observations are relevant to the role of aromatic acid residues of the apoprotein in the determination of the chromophoric characteristics in bacteriorhodopsin.

Bacteriorhodopsins↗
PubMed1983

Biological applications of picosecond spectroscopy.

Technological advances in picosecond spectroscopy have permitted the mechanisms of various chemical, physical and biological processes to be elucidated and understood to a greater degree than ever before. By means of picosecond emission, absorption and Raman spectroscopy, one can probe and measure directly the transient intermediates and kinetics of primary events in complex biological processes. A description of two current types of laser systems--solid-state and synchronously pumped dye lasers--and their application to determining the primary events in the biological processes of dissociation of oxy- and carboxymyoglobin, excited-state relaxation of porphyrins and visual transduction, illustrate the power of picosecond spectroscopy.

Carbon Monoxide↗
PubMed1983

Bathorhodopsin intermediates from 11-cis-rhodopsin and 9-cis-rhodopsin.

Bathorhodopsin-rhodopsin difference spectra of native 11-cis-rhodopsin and regenerated 9-cis-rhodopsin were measured at room temperature with a double-beam laser spectrophotometer after excitation at 532 nm. A detailed analysis of data obtained at 85 psec after excitation suggests that the bathorhodopsins generated from 11-cis- and 9-cis-rhodopsin differ in their extinction coefficients and that their absorption maxima are shifted in wavelength by about 10 nm from one another. The ratio of quantum yields for photochemical production of the 11-cis-bathorhodopsin and the 9-cis-bathorhodopsin approximates 1. Implications that the early photochemical processes in vision are more complex than previously considered are explored.

Animals↗
PubMed1982

Picosecond spectroscopy of Cu(II) cytochrome c.

We have observed a strong pH dependence in the relaxation rate of Cu(II) cytochrome c following excitation at 532 nm. At pH 8.0 the excited state relaxes with a lifetime of 10 +/- 5 ps while at pH extremes of 2.5 and 13.0 we find that the lifetime becomes longer than 1 ns. This change of more than two orders of magnitude in the lifetime may be due to the Cu coordination number, which is six at neutral pH but five at pH extremes.

Cytochrome c Group↗
PubMed1982

Kinetics and temperature dependence of carboxymyoglobin ligand photodissociation.

We have observed the rate of oxymyoglobin (MbO2) photodissociation at room temperature and carboxymyoglobin (MbCO) photodissociation as a function of temperature (260-10 K) by means of picosecond spectroscopy. The Mb + O2 and Mb + CO photodissociated states have also been characterized. Based on the picosecond experimental data, we postulate that the photodissociation of ligated myoglobin is a nonactivitated process, and the mechanism involves either a small enthalpy barrier or none at all.

Animals↗
PubMed1981

Mechanisms for excited state relaxation and dissociation of oxymyoglobin and carboxymyoglobin.

The dissociation of carboxymyoglobin (MbCO) and oxymyoglobin (MbO2) induced by 530-nm picosecond excitation in the beta band or the 355-nm delta band has been measured by monitoring the absorbance changes at 420 and 440 nm corresponding to ligand-bound and ligand-detached species, respectively. We find that MbO2 and MbCO dissociate with very similar rates, which do not reflect the 30-fold difference between the quantum yields of the two reactions. Kinetic data suggest that a short-lived intermediate is formed that is responsible for the low quantum efficiency of the MbO2 dissociation.

Animals↗
PubMed1979

Energy transfer among the chromophores in phycocyanins measured by picosecond kinetics.

Energy-transfer processes in the algal light-harvesting proteins, the phycocyanins, have been studied by means of picosecond absorption spectroscopy. After excitation at 530 nm, the absorption at several wavelengths in the range 480--669 nm decayed with a short time constant (picosecond) and a long time constant (greater than 1 ns). For C-phycocyanin, energy transfer from the beta to the alpha subunits is interpreted as being a likely candidate for the short time constant; the long time constant probably is the excitation lifetime of the chromophore on the alpha subunits. The time constants for energy transfer in monomers, trimers, and hexamers of C-phycocyanin extracted from a blue-green alga, Phormidium luridum, were measured as approximately 85, approximately 56, and approximately 32 ps, respectively. The corresponding time constant in the cryptomonad phycocyanin 645 from Chroomonas species was found to be less than 5 ps.

Cyanobacteria↗
PubMed1979

Kinetics of carboxymyoglobin and oxymyoglobin studied by picosecond spectroscopy.

Picosecond studies of carboxymyoglobin (MbCO) and oxymyoglobin (MbO2) reveal that excitation at 530 nm induces photodissociation at less than 8 ps. The kinetic and structural changes were monitored by following absorbance changes at selected wave-lengths in the Soret (B) band and in the Q band. Within the 10 ps-0.45 ns period of time over which our experiments were conducted, the absorbance changes in the Soret and Q bands for MbCO and MbO2 correspond to the conventional long-term, steady-state deoxymyoglobin difference spectra (Mb-MbCO and Mb-MbO2), as determined by comparison of isosbestic, maximum, and minimum points. In addition, MbCO exhibits a decay to a steady state in the Soret band (monitored at 440 nm). The onset of the decay immediately follows photodissociation and has a rate of (8 +/- 3) X 10(9) s-1 (tau = 125 +/- 50 ps). During the 10 ps-0.45 ns observation window, relaxation is not seen for MbO2 in the Soret band, nor is relaxation observed in the Q band for either MbCO or MbO2. We conclude from these results that the steady state that we observed for MbCO and MbO2 is most likely the stable form of deoxymyoglobin, and the relaxational differences between MbCO and MbO2 observed in the Soret band indicate that the electronic destabilization after ligand detachment is very different for these molecules. We believe that these relaxational differences may be related to differences in tertiary structural changes, or due to the fact that the MbCO (S = 0) molecule passes through an intermediate spin Mb (S = 1) state before relaxing the the Mb (S = 2) state.

Animals↗
PubMed1978

Picosecond chemical and biological events.

Picosecond spectroscopy is a relatively new field of science that utilizes ultrashort laser pulses to monitor events taking place in the 10(-12) second regime. The continuing development of picosecond spectroscopy has made possible the detection and measurement of the primary events in many physical and tiological processes. This article describes a currently used picosecond spectroscopy system that is capable of reliably recording picosecond events. Two areas of picosecond research are discussed; one concerns the interaction of electrons in fluids, and the second the primary events in vision.

Chemical Phenomena↗