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P Berg

Publications and source records attributed to P Berg.

At least 55 records · Page 3Linked to original sources
PubMed1999

Common spatial subspace decomposition applied to analysis of brain responses under multiple task conditions: a simulation study.

A method, called common spatial subspace decomposition, is presented which can extract signal components specific to one condition from multiple magnetoencephalography/electroencephalography data sets of multiple task conditions. Signal matrices or covariance matrices are decomposed using spatial factors common to multiple conditions. The spatial factors and corresponding spatial filters are then dissociated into specific and common parts, according to the common spatial subspace which exists among the data sets. Finally, the specific signal components are extracted using the corresponding spatial filters and spatial factors. The relationship between this decomposition and spatio-temporal source models is described in this paper. Computer simulations suggest that this method can facilitate the analysis of brain responses under multiple task conditions and merits further application.

Brain↗
PubMed1999

Determining working memory from ERP topography.

Event-related potentials were recorded during a delayed matching-to-sample design from 17 volunteers (5 f) using high-resolution (65 channels) EEG-recordings. In the two-stimulus paradigm, the 500-ms stimulus S1 comprised a visual pattern of two diamonds differing in size, angular rotation and location; in the delay period, Working Memory (WM) load was varied in the following way: a stimulus-free interval of 1 s was followed by a 6-s presentation either of a pattern identical to the S1 (low WM load) or of a pattern differing from S1 (high WM load). The 500-ms stimulus S2 comprised one diamond; the subject's task was to indicate by left- or right-hand (respectively) button press, whether the S2 matched the (a) left- or (b) right-positioned S1-diamond, or (c) did not match at all (NoGo). The topographical distribution of activity in the time intervals (a) following S1-offset, (b) during the WM manipulation interval and (c) prior to S2 were evaluated in the signal (scalp potential) and source (Minimum Norm) space. Following S1-offset the ERP pattern was characterised by negativity over posterior areas, slightly more so over the right hemisphere. In the subsequent 6-s interval high WM load elicited a larger negative slow ERP than low WM load, the negativity increase due to high WM load being larger over frontal than central areas. Source modelling indicated activity in anterior areas under high, and posterior activity under low WM load. Asymmetry of activity, although indicating a shift to left-hemispheric activity under high compared to low WM load, varied considerably between subjects. Results suggest that high-resolution ERP recordings allow to examine cortical activity during WM challenge.

Adolescent↗
PubMed1999

Comparison of dust sampling methods in Estonia and Sweden--a field study.

The purpose of this field study was to compare an Estonian dust sampling method, a method also used in other former East Block countries, with a Swedish method and to estimate inter-method agreement with statistical analyses. The Estonian standard method (ESM), used to assess exposure in Estonia since the early 1950s, is based on a strategy where air samples are collected for 10 minutes every hour over a full shift. This method was compared to a Swedish standard method (SSM), a modified NIOSH method, comparable to international standards, where one air sample is collected during a full shift. The study was carried out at a cement plant that in the beginning of the 1990s was subjected to an epidemiological study, including collection of exposure data. The results of the analysis from 31 clusters of parallel samples of the two methods, when dust consisting of Portland cement was collected, showed a relatively weak correlation between the SSM and the ESM, ri = 0.81 (Pearson's intra-class correlation coefficient). A conversion factor between the two methods was estimated, where SSM is 0.69 times ESM and the limits of agreement are 0.25 and 1.84, respectively. These results indicate a substantial inter-method difference. We therefore recommend that measurements obtained from the two methods should not be used interchangeably. Because the present study is of limited extent, our findings are confined to the operations studied and further studies covering other exposure situations will be needed.

Air Pollutants, Occupational↗
PubMed1999

Multiple source analysis of interictal spikes: goals, requirements, and clinical value.

When evaluating interictal spikes using dipole source analysis it is important to account for multiple sources and the overlapping background EEG. Analyses of spike peaks may be modeling only propagated sources. Careful filtering of averaged spike data and multiple source analysis can provide useful information about the onset of epileptiform activity. A forward high-pass filter can help to enhance the initial spike activity during onset over the propagated activity. These points are illustrated with examples of a temporal, a parietal, and a frontal averaged spike. Multiple source analysis was applied using a genetic algorithm and a sequential strategy, in one case including a model of background alpha activity. Multiple source analysis could model sources describing the onset activity that were distinct in location and orientation from the propagated activity. In all cases, the prominent peak on the scalp was dominated by the contribution of propagated sources. Clinical interpretation benefits from an approach that combines the temporal evolution of EEG scalp topography and multiple source activities with the information from localization and orientation of equivalent dipole sources to identify the cortical generators underlying the earliest phase of interictal spikes.

Action Potentials↗
PubMed1998

Branch migration during Rad51-promoted strand exchange proceeds in either direction.

The Saccharomyces cerevisiae Rad51 protein is important for genetic recombination and repair of DNA double-strand breaks in vivo and can promote strand exchange between linear double-stranded DNA and circular single-stranded DNA in vitro. However, unlike Escherichia coli RecA, Rad51 requires an overhanging complementary 3' or 5' end to initiate strand exchange; given that fact, we previously surmised that the fully exchanged molecules resulted from branch migration in either direction depending on which type of end initiated the joint molecule. Our present experiments confirm that branch migration proceeds in either direction, the polarity depending on whether a 3' or 5' end initiates the joint molecules. Furthermore, heteroduplex DNA is formed rapidly, first at the overhanging end of the linear double-stranded DNA's complementary strand and then more slowly by progressive lengthening of the heteroduplex region until strand exchange is complete. Although joint molecule formation occurs equally efficiently when initiated with a 3' or 5' overhanging end, branch migration proceeds more rapidly when it is initiated by an overhanging 3' end, i.e., in the 5' to 3' direction with respect to the single-stranded DNA.

DNA, Fungal↗
PubMed1998

Interaction of Rad51 with ATP and Mg2+ induces a conformational change in Rad51.

The presumptive first step in the Rad51-promoted formation of joint molecules is binding of the protein to ssDNA in the presence of ATP and Mg2+. In this paper, we report that Rad51's ability to bind DNA is rapidly inactivated when incubated at 30-37 degrees C but is stabilized by the presence of ATP and Mg2+. Although unable to promote binding to DNA, ATP-gamma-S also prevents inactivation of Rad51 at 37 degrees C. AMP-P-N-P lacks this property, while ADP protects partially but only at 5-10 times higher concentrations than ATP. These observations correlate with the dissociation constant of those nucleotides for Rad51 determined by equilibrium dialysis. Rad51 binds ATP and ATP-gamma-S with a 1:1 stoichiometry and Kds of 21 and 19 microM, respectively. The presence of DNA significantly increases the affinity of Rad51 for ATP, while DNA has a smaller effect on the affinity of ATP-gamma-S. Competition binding studies show that ADP and AMP-P-N-P bind with a 5- and 55-fold lower affinity, respectively, than ATP. The CD spectrum of Rad51 with negative double minima at around 210 and 222 nm is characteristic of an alpha-helical protein. Upon binding ATP and Mg2+, the CD spectrum is altered in the regions 194-208 and 208-235 nm, changes that are indicative of a more structured state; this change does not occur with Rad51 that has been inactivated at 37 degrees C. We surmise that the active conformation is more resistant to inactivation at elevated temperature. Our data suggest that one of the roles of ATP and Mg2+ in Rad51-mediated strand exchange is to induce the proper protein structure for binding the two DNA substrates.

Adenosine Triphosphate↗
PubMed1998

Modulation of the cellular and humoral immune responses of tumor patients by mistletoe therapy.

There is evidence from recent data that mistletoe extracts exert immunostimulatory properties which could explain their therapeutic effects observed in some tumor patients. Aim of our study was, therefore, to investigate the effect of a subcutaneous 16-weeks therapy with a mistletoe extract (ABNOBAviscum Mali, AM) on the cellular and humoral immune responses in eight breast cancer patients. Mistletoe therapy induced a strong initial proliferation of peripheral blood mononuclear cells (PBMC) in all individuals, which, however, decreased in six patients during the observation period, indicating that not only activating but also inhibitory mechanisms have been induced. In all supernatants of AM-stimulated cell cultures TNF-alpha or IL-6 were found, indicating the activation of cells of the monocyte-/macrophage lineage by mistletoe extracts. Further analyses revealed, that AM induced in vitro also the release of low amounts of IFN-gamma and IL-4 with individual variations. At the end of the therapy, a shift to Th1- related cytokines could be observed in the in vitro cell culture system. All patients produced anti-mistletoe lectin 1 antibodies of the IgG-type during therapy and in four of them additionally antibodies of the IgE-type were found. It, therefore, seems that AM can influence the Th1/Th2 balance and, in case of a Th1 shift, this may favourably influence the tumor growth.

Adjuvants, Immunologic↗
PubMed1998

Binding of Rad51p to DNA. Interaction of Rad51p with single- and double-stranded DNA.

Like RecA, Saccharomyces cerevisiae Rad51p promotes strand exchange between circular single-stranded DNA (ssDNA) and linear double-stranded DNA (dsDNA). We have investigated several parameters characteristic of the interaction of Rad51p with ssDNA and dsDNA, particularly the effects of the nucleotide cofactors ATP and ADP and the analogs adenosine 5'-O-(thiotriphosphate) (ATPgammaS) and adenylyl-imidodiphosphate (AMP-PNP). Rad51p binding to both 1-N6-ethenoadenosine and 3-N4-ethenocytidine ssDNA (epsilonDNA) and dsDNA requires the presence of Mg2+ and ATP; no binding occurs in the presence of ADP, AMP-PNP, or ATPgammaS. Binding of Rad51p to dsDNA also requires ATP; ADP is ineffective, whereas ATPgammaS and AMP-PNP are considerably less able to promote binding and only at elevated concentrations of Rad51p. ATP binding, not ATP hydrolysis, is required for Rad51p binding to DNA. The Kd values for ATP for promoting binding of Rad51p to ssDNA and dsDNA are 1 and 3 microM, respectively. Rad51p binding occurs with a stoichiometry of one monomer of Rad51p per approximately 6.3 nucleotides of epsilonDNA and approximately 3.3 base pairs of dsDNA. Once formed, Rad51p. ssDNA complexes are stable so long as sufficient ATP levels are maintained. ATP hydrolysis causes dissociation of Rad51p from DNA. Moreover, the preformed complex is stable in the presence of a 10-fold excess of ADP or AMP-PNP over ATP. ATPgammaS, however, in the same -fold excess over ATP causes dissociation of the Rad51p. ssDNA complex.

Adenosine Triphosphate↗
PubMed1998

Topography of CNV and PINV in schizotypal personality.

The topography of the postimperative negative variation (PINV) was analyzed in participants with high and low scores on the German version of the Schizotypal Personality Questionnaire. Scalp amplitude and Laplacian maps of the terminal contingent negative variation (tCNV) and PINV and the time course of the PINV were compared between the two groups. CNV and PINV were induced with a delayed matching-to-sample task, in which the pattern of the imperative stimulus was either clearly or ambiguous matched to one of the two diamonds simultaneously presented as a warning stimulus 4.0 s earlier. Electroencephalograms were recorded with a DC amplifier (32 channels). Negativity increased from tCNV to PINV, especially at frontal sites, and the PINV was larger under ambiguous than under clear matching conditions. Low-scoring participants showed a right-sided predominance of the PINV, which was absent in high-scoring participants. These results resemble differences in the topography of the PINV between healthy control participants and those with schizophrenia under identical experimental conditions and suggest functional differences between tCNV and PINV.

Adult↗
PubMed1998

Analysis of gene targeting and intrachromosomal homologous recombination stimulated by genomic double-strand breaks in mouse embryonic stem cells.

To investigate the effects of in vivo genomic DNA double-strand breaks on the efficiency and mechanisms of gene targeting in mouse embryonic stem cells, we have used a series of insertion and replacement vectors carrying two, one, or no genomic sites for the rare-cutting endonuclease I-SceI. These vectors were introduced into the hypoxanthine phosphoribosyltransferase (hprt) gene to produce substrates for gene-targeting (plasmid-to-chromosome) or intrachromosomal (direct repeat) homologous recombination. Recombination at the hprt locus is markedly increased following transfection with an I-SceI expression plasmid and a homologous donor plasmid (if needed). The frequency of gene targeting in clones with an I-SceI site attains a value of 1%, 5,000-fold higher than that in clones with no I-SceI site. The use of silent restriction site polymorphisms indicates that the frequencies with which donor plasmid sequences replace the target chromosomal sequences decrease with distance from the genomic break site. The frequency of intrachromosomal recombination reaches a value of 3.1%, 120-fold higher than background spontaneous recombination. Because palindromic insertions were used as polymorphic markers, a significant number of recombinants exhibit distinct genotypic sectoring among daughter cells from a single clone, suggesting the existence of heteroduplex DNA in the original recombination product.

Amino Acid Sequence↗
PubMed1998

Studies of the interaction between Rad52 protein and the yeast single-stranded DNA binding protein RPA.

The RFA1 gene encodes the large subunit of the yeast trimeric single-stranded DNA binding protein replication protein A (RPA), which is known to play a critical role in DNA replication. A Saccharomyces cerevisiae strain carrying the rfa1-44 allele displays a number of impaired recombination and repair phenotypes, all of which are suppressible by overexpression of RAD52. We demonstrate that a rad52 mutation is epistatic to the rfa1-44 mutation, placing RFA1 and RAD52 in the same genetic pathway. Furthermore, two-hybrid analysis indicates the existence of interactions between Rad52 and all three subunits of RPA. The nature of this Rad52-RPA interaction was further explored by using two different mutant alleles of rad52. Both mutations lie in the amino terminus of Rad52, a region previously defined as being responsible for its DNA binding ability (U. H. Mortenson, C. Beudixen, I. Sunjeuaric, and R. Rothstein, Proc. Natl. Acad. Sci. USA 93:10729-10734, 1996). The yeast two-hybrid system was used to monitor the protein-protein interactions of the mutant Rad52 proteins. Both of the mutant proteins are capable of self-interaction but are unable to interact with Rad51. The mutant proteins also lack the ability to interact with the large subunit of RPA, Rfa1. Interestingly, they retain their ability to interact with the medium-sized subunit, Rfa2. Given the location of the mutations in the DNA binding domain of Rad52, a model incorporating the role of DNA in the protein-protein interactions involved in the repair of DNA double-strand breaks is presented.

Alleles↗
PubMed1998

Quality improvement in the diagnosis and treatment of heart failure by participating Indiana and Kentucky hospitals.

Acute-care hospitals in Kentucky and Indiana collaborated with Health Care Excel, the Medicare peer review organization, to improve the care of patients admitted with heart failure. Current guidelines for the treatment of heart failure support a focus on quality indicators including confirmation of diagnosis, choice of therapeutic agents, education of patients and their caregivers, and discharge planning. Significant improvement occurred in use of diagnostic tests to confirm diagnosis and in patient education and discharge planing. Improvement in use of therapeutic agents was minimal or lacking in most hospitals. This project demonstrated an opportunity and need for continued improvement efforts in the care of heart failure patients.

Chi-Square Distribution↗
PubMed1997

Is phototherapy in neonates a risk factor for malignant melanoma development?

OBJECTIVE: To determine whether phototherapy of the newborn's sensitive skin could be a risk factor for malignant melanoma. DESIGN: Retrospective study from 1973 to 1992. SETTING: The Swedish Medical Birth Registry and the Swedish Cancer Registry. PATIENTS: Thirty cases of childhood malignant melanoma and 120 matched controls. INTERVENTION: None. MAIN OUTCOME MEASURES: Data in birth and cancer reports and from death certificates in Sweden. RESULTS: None of the patients with childhood malignant melanoma had received phototherapy, in comparison with 11 of the controls. This difference was not significant (P = .08; Fisher exact test). CONCLUSION: This preliminary report shows no significant risk of developing childhood malignant melanoma after phototherapy of the skin in neonates with hyperbilirubinemia. However, the median follow-up time was only 18 years.

Female↗