Biomedical subjects

N F van Hulst

Publications and source records attributed to N F van Hulst.

At least 19 recordsLinked to original sources

PubMed2005

Single-molecule pump-probe experiments reveal variations in ultrafast energy redistribution.

Single-molecule pump probe (SM2P) is a novel, fluorescence-based technique that allows the study of ultrafast processes on the single-molecule level. Exploiting SM2P we have observed large variations (from 1 ps to below 100 fs) in the energy redistribution times of chemically identical molecules in the same sample. Embedding the molecules in a different matrix or changing the excitation wavelength does not lead to significant changes in the average redistribution time. However, chemically different molecules exhibit different characteristic redistribution times. We therefore conclude that the process measured with the SM2P technique is dominated by intramolecular energy redistribution and not intermolecular transfer to the surrounding matrix. The matrix though is responsible for inducing conformational changes in the molecule, which affect the coupling between electronic and vibrational modes. These conformational changes are the main origin of the observed broad distribution of redistribution times.

Journal Article↗

PubMed2005

Direct observation of Bloch harmonics and negative phase velocity in photonic crystal waveguides.

The eigenfield distribution and the band structure of a photonic crystal waveguide have been measured with a phase-sensitive near-field scanning optical microscope. Bloch modes, which consist of more than one spatial frequency, are visualized in the waveguide. In the band structure, multiple Brillouin zones due to zone folding are observed, in which positive and negative dispersion is seen. The negative slopes are shown to correspond to a negative phase velocity but a positive group velocity. The lateral mode profile for modes separated by one reciprocal lattice vector is found to be different.

Journal Article↗

PubMed2005

Fluorescence lifetime fluctuations of single molecules probe local density fluctuations in disordered media: a bulk approach.

We investigated the nanometer scale mobility of polymers in the glassy state by monitoring the dynamics of embedded single fluorophores. Recently we reported on fluorescence lifetime fluctuations which reflect the segmental rearrangement dynamics of the polymer in the surroundings of the single molecule probe. Here we focus on the nature of these fluorescence lifetime fluctuations. First the potential role of quenching and molecular conformational changes is discussed. Next we concentrate on the influence of the radiative density of states on the spontaneous emission of individual dye molecules embedded in a polymer. To this end we present a theory connecting the effective-medium theory to a cell-hole model, originating from the Simha-Somcynsky free-volume theory. The relation between the derived distributions of free volume and fluorescence lifetime allows one to determine the number of segments involved in the local rearrangement directly from experimental data. Results for two different polymers as a function of temperature are presented.

Journal Article↗

PubMed2005

Real-space observation of ultraslow light in photonic crystal waveguides.

We show the real-space observation of fast and slow pulses propagating inside a photonic crystal waveguide by time-resolved near-field scanning optical microscopy. Local phase and group velocities of modes are measured. For a specific optical frequency we observe a localized pattern associated with a flat band in the dispersion diagram. During at least 3 ps, movement of this field is hardly discernible: its group velocity would be at most c/1000. The huge trapping times without the use of a cavity reveal new perspectives for dispersion and time control within photonic crystals.

Journal Article↗

PubMed2005

Creating focused plasmons by noncollinear phasematching on functional gratings.

We report on the concept, generation, and first observations of focused surface plasmons on shaped gratings. The grating patterns are designed to realize focusing and directing through noncollinear phasematching. The plasmons are generated on patterned gold surfaces, and the plasmon propagation is observed using phase-sensitive photon scanning tunneling microscopy (PSTM) to extract the propagation pattern, direction, and wavelength.

Journal Article↗

PubMed2004

Phase mapping of ultrashort pulses in bimodal photonic structures: a window on local group velocity dispersion.

The amplitude and phase evolution of ultrashort pulses in a bimodal waveguide structure has been studied with a time-resolved photon scanning tunneling microscope (PSTM). When waveguide modes overlap in time intriguing phase patterns are observed. Phase singularities, arising from interference between different modes, are normally expected at equidistant intervals determined by the difference in effective index for the two modes. However, in the pulsed experiments the distance between individual singularities is found to change not only within one measurement frame, but even depends strongly on the reference time. To understand this observation it is necessary to take into account that the actual pulses generating the interference signal change shape upon propagation through a dispersive medium. This implies that the spatial distribution of phase singularities contains direct information on local dispersion characteristics. At the same time also the mode profiles, wave vectors, pulse lengths, and group velocities of all excited modes in the waveguide are directly measured. The combination of these parameters with an analytical model for the time-resolved PSTM measurements shows that the unique spatial phase information indeed gives a direct measure for the group velocity dispersion of individual modes. As a result interesting and useful effects, such as pulse compression, pulse spreading, and pulse reshaping become accessible in a local measurement.

Journal Article↗

PubMed2004

Single molecule photobleaching probes the exciton wave function in a multichromophoric system.

The exciton wave function of a trichromophoric system is investigated by means of single molecule spectroscopy at room temperature. Individual trimers exhibit superradiance and loss of vibronic structure in emission spectrum, features proving exciton delocalization. We identify two distinct photodegradation pathways for single trimers upon sequential photobleaching of the chromophores. The rate of each pathway is a measure for the contribution of the separate dyes to the collective excited state of the system, in this way probing the wave function of the delocalized exciton.

Journal Article↗

PubMed2004

Monolayer-functionalized microfluidics devices for optical sensing of acidity.

This paper describes the integration of opto-chemosensors in microfluidics networks. Our technique exploits the internal surface of the network as a platform to build a sensing system by coating the surface with a self-assembled monolayer and subsequently binding a fluorescent sensing molecule to the monolayer. Fluorescent molecules were used that can switch between a fluorescent and a non-fluorescent state, depending on the acidity of the surrounding solution. Two systems were investigated. The first employs surface confinement of a Rhodamine B dye in a glass micro channel that serves as a molecular switch in organic solutions. Upon rinsing the micro channels with acidic or basic solutions it was possible to switch between the fluorescent and non-fluorescent forms reversibly. Moreover, this system could be used to monitor the mixing of two solutions of different acidity along the micro channel. To widen the scope of optical sensing in micro channels an Oregon Green dye derivative was immobilized, which functions as a sensing molecule for pH differences in aqueous solutions. In this case, a hybrid system was used consisting of a glass slide and PDMS channels. The fluorescence intensity was found to be directly correlated to the pH of the solution in contact, indicating the possibility of using such a system as a pH sensor. These systems allow real-time measurements and can be easily implemented in micro- and nanofluidics systems thus enabling analysis of extremely small sample volumes in a fast and reproducible manner.

Journal Article↗

PubMed2004

Near-field scanning optical microscopy in liquid for high resolution single molecule detection on dendritic cells.

Clustering of cell surface receptors into micro-domains in the plasma membrane is an important mechanism for regulating cellular functions. Unfortunately, these domains are often too small to be resolved with conventional optical microscopy. Near-field scanning optical microscopy (NSOM) is a relatively new technique that combines ultra high optical resolution, down to 70 nm, with single molecule detection sensitivity. As such, the technique holds great potential for direct visualisation of domains at the cell surface. Yet, NSOM operation under liquid conditions is far from trivial. In this contribution, we show that the performance of NSOM can be extended to measurements in liquid environments using a diving bell concept. For the first time, individual fluorescent molecules on the membrane of cells in solution are imaged with a spatial resolution of 90 nm. Furthermore, using this technique we have been able to directly visualise nanometric sized domains of the C-type lectin DC-SIGN on the membrane of dendritic cells, both in air and in liquid.

Cell Adhesion Molecules↗

PubMed2004

Propagation of a femtosecond pulse in a microresonator visualized in time.

A noninvasive pulse-tracking technique has been exploited to observe the time-resolved motion of an ultrashort light pulse within an integrated optical microresonator. We follow a pulse as it completes several round trips in the resonator, directly mapping the resonator modes in space and time. Our time-dependent and phase-sensitive measurement provides direct access to the angular group and phase velocity of the modes in the resonator. From the measurement the coupling constants between the access waveguides and the resonator are retrieved while at the same time the loss mechanisms throughout the structure are directly visualized.

Journal Article↗

PubMed2004

Strong influence of hole shape on extraordinary transmission through periodic arrays of subwavelength holes.

We show that extraordinary light transmission of periodic subwavelength hole arrays, generally attributed to surface-plasmon resonances, is strongly influenced by the hole shape. Both experiments and calculations, based on a Fourier modal method, demonstrate that a shape change from circular to rectangular increases the normalized transmission by an order of magnitude while the hole area decreases. Moreover, the spectra exhibit large redshifts (approximately 2500 cm(-1)). A comparison with the transmission of isolated holes shows that shape resonances of the rectangular holes play a dominant role.

Journal Article↗

PubMed2003

Tracking ultrashort pulses through dispersive media: experiment and theory.

We report on the direct visualization of a femtosecond pulse propagating through a dispersive waveguide at a telecom wavelength. The position of a propagating pulse is pinpointed at a particular point in space and time using a scanning probe based measurement. The actual propagation of the pulse is visualized by changing the reference time. Our phase-sensitive and time-resolved measurement provides local information on all properties of the light pulse as it propagates, in particular its phase and group velocity. Here, we show that the group velocity dispersion can be retrieved from our measurement by developing an analytical model for the measurements performed with a time-resolved photon scanning tunneling microscope. As a result, interesting and useful effects, such as pulse compression, pulse spreading, and pulse reshaping, become accessible in the local measurement.

Journal Article↗

PubMed2003

Single molecule lifetime fluctuations reveal segmental dynamics in polymers.

We present a single molecule fluorescence study that allows one to probe the nanoscale segmental dynamics in amorphous polymer matrices. By recording single molecular lifetime trajectories of embedded fluorophores, peculiar excursions towards longer lifetimes are observed. The asymmetric response is shown to reflect variations in the photonic mode density as a result of the local density fluctuations of the surrounding polymer. We determine the number of polymer segments involved in a local segmental rearrangement volume around the probe. A common decrease of the number of segments with temperature is found for both investigated polymers, poly(styrene) and poly(isobutylmethacrylate). Our novel approach will prove powerful for the understanding of the nanoscale rearrangements in functional polymers.

Journal Article↗

PubMed2003

Near-field optical investigation of three-dimensional photonic crystals.

We show that the coupling of light from an external pointlike light source into a three-dimensional photonic crystal depends on the relative launching position with respect to the crystal lattice as well as on the frequency of light. The results are obtained with a near-field technique which is used to acquire optical information beyond the diffraction limit and to access optical details within the unit cell of the crystal. The experiments are performed at frequencies near the second-order L-gap. As a result, the changes in the shape of the near-field pattern are explained by the photonic properties of the crystal.

Journal Article↗

PubMed2001

The nature of fluorescence emission in the red fluorescent protein DsRed, revealed by single-molecule detection.

Recent studies on the newly cloned red fluorescence protein DsRed from the Discosoma genus have shown its tremendous advantages: bright red fluorescence and high resistance against photobleaching. However, it has also become clear that the protein forms closely packed tetramers, and there is indication for incomplete protein maturation with unknown proportion of immature green species. We have applied single-molecule methodology to elucidate the nature of the fluorescence emission in the DsRed. Real-time fluorescence trajectories have been acquired with polarization sensitive detection. Our results indicate that energy transfer between identical monomers occurs efficiently with red emission arising equally likely from any of the chromophoric units. Photodissociation of one of the chromophores weakly quenches the emission of adjacent ones. Dual color excitation (at 488 and 568 nm) single-molecule microscopy has been performed to reveal the number and distribution of red vs. green species within each tetramer. We find that 86% of the DsRed contain at least one green species with a red-to-green ratio of 1.2-1.5. On the basis of our findings, oligomer suppression would not only be advantageous for protein fusion but will also increase the fluorescence emission of individual monomers.

Animals↗

PubMed2001

Tracking femtosecond laser pulses in space and time.

We show that the propagation of a femtosecond laser pulse inside a photonic structure can be directly visualized and tracked as it propagates using a time-resolved photon scanning tunneling microscope. From the time-dependent and phase-sensitive measurements, both the group velocity and the phase velocity are unambiguously and simultaneously determined. It is expected that this technique will find applications in the investigation of the local dynamic behavior of photonic crystals and integrated optical circuits.

Journal Article↗

PubMed2000

Real-time light-driven dynamics of the fluorescence emission in single green fluorescent protein molecules.

Real-time single-molecule fluorescence detection using confocal and near-field scanning optical microscopy has been applied to elucidate the nature of the "on-off" blinking observed in the Ser-65 --> Thr (S65T) mutant of the green fluorescent protein (GFP). Fluorescence time traces as a function of the excitation intensity, with a time resolution of 100 micros and observation times up to 65 s, reveal the existence of a nonemissive state responsible for the long dark intervals in the GFP. We find that excitation intensity has a dramatic effect on the blinking. Whereas the time during which the fluorescence is on becomes shorter as the intensity is increased, the off-times are independent of excitation intensity. Statistical analysis of the on- and off-times renders a characteristic off-time of 1.6 +/- 0.2 s and allows us to calculate a transition yield of approximately 0.5 x 10(-5) from the emissive to the nonemissive state. The saturation excitation intensity at which on- and off-times are equal is approximately 1.5 kW/cm(2). On the basis of the single-molecule data we calculate an absorption cross section of 6.5 x 10(-17) cm(2) for the S65T mutant. These results have important implications for the use of the GFP to follow dynamic processes in time at the single-molecular level.

Fluorescence↗

PubMed1999

Visualising individual green fluorescent proteins with a near field optical microscope.

The use of the green fluorescence protein (GFP) as an individual marker for applications in molecular biology requires detailed understanding of its photophysical and photodynamical properties. We investigated individual S65T mutants of GFP both on a glass surface and embedded in a water-pore gel. An aperture-type near field scanning optical microscope (NSOM) with two polarisation detection channels was applied to afford high spatial (approximately 70 nm) and temporal (0.5 ms) resolution. Shear-force and near field fluorescence imaging were performed simultaneously, allowing direct correlation between topographic and optical features. Polarisation data showed that the emission dipole moment of the proteins is fixed in space within both the barrel structure of the protein and the gel matrix used for spatial confinement of the proteins. The photophysical behaviour of the S65T-GFP mutants was monitored in time, with 500-micros real-time resolution and continuous imaging for periods of more than 2 h. Our results show the reversible on-off behaviour on a time scale that spans from 10(-4) to 10(3) s. Even a process generally identified as "bleaching" turns out to be reversible if a sufficient long observation time is allowed. As such, the photodynamics of individual GFPs appear to be much more complex than the properties deduced from ensemble-averaged measurements.

Green Fluorescent Proteins↗