Biomedical subjects

N Balakrishnan

Publications and source records attributed to N Balakrishnan.

At least 19 recordsLinked to original sources

PubMed2026

Expression patterns of risk genes associated with three evolutionarily relevant syndromes in rhesus macaque and human brains.

Depressive disorder (DD), Alzheimer's disease (AD), and schizophrenia (SZ) are evolutionarily relevant traits that disrupt neural networks supporting affect and cognition. While genome-wide association studies have identified risk-related genes for these diseases, how the expression of these genes compare across species remains unclear. In this study, we examined the spatial and temporal expression of ~2000 disease-associated genes in human and rhesus macaque brains. Distinct cross-species signatures emerged. DD-linked genes showed broad cortical-subcortical expression in humans but were confined to subcortical regions in macaques. The divergent subset was enriched for neuron differentiation, migration, synaptic signalling, and cognition. SZ-linked genes were expressed across cortical-subcortical-cerebellar structures in humans. AD-linked genes showed postnatal cortical-hippocampal macaque expression, and broader cortical-subcortical human expression. Cross-species spatial comparisons revealed a significant negative correlation for DD genes, suggesting a broader spatial distribution of DD-related gene expression in humans, extending to distributed emotion-cognition networks, compared to affective hubs in macaques. SZ genes exhibited a similar, though non-significant, negative trend, while AD genes showed a weak, non-significant correlation, indicating an absence of systematic expression shifts. Together, evolutionary shifts in gene expression may have shaped emotional and cognitive functions in humans, and susceptibility to psychiatric and neurodegenerative disorders.

Animals↗

PubMed2006

State-to-state rotational transitions in H2+H2 collisions at low temperatures.

We present quantum mechanical close-coupling calculations of collisions between two hydrogen molecules over a wide range of energies, extending from the ultracold limit to the superthermal region. The two most recently published potential energy surfaces for the H(2)-H(2) complex, the so-called Diep-Johnson (DJ) [J. Chem. Phys. 112, 4465 (2000); 113, 3480 (2000)] and Boothroyd-Martin-Keogh-Peterson (BMKP) [J. Chem. Phys. 116, 666 (2002)] surfaces, are quantitatively evaluated and compared through the investigation of rotational transitions in H(2)+H(2) collisions within rigid rotor approximation. The BMKP surface is expected to be an improvement, approaching chemical accuracy, over all conformations of the potential energy surface compared to previous calculations of H(2)-H(2) interaction. We found significant differences in rotational excitation/deexcitation cross sections computed on the two surfaces in collisions between two para-H(2) molecules. The discrepancy persists over a large range of energies from the ultracold regime to thermal energies and occurs for several low-lying initial rotational levels. Good agreement is found with experiment B. Mate et al., [J. Chem. Phys. 122, 064313 (2005)] for the lowest rotational excitation process, but only with the use of the DJ potential. Rate coefficients computed with the BMKP potential are an order of magnitude smaller.

Journal Article↗

PubMed2006

Generalized gamma frailty model.

In this article, we present a frailty model using the generalized gamma distribution as the frailty distribution. It is a power generalization of the popular gamma frailty model. It also includes other frailty models such as the lognormal and Weibull frailty models as special cases. The flexibility of this frailty distribution makes it possible to detect a complex frailty distribution structure which may otherwise be missed. Due to the intractable integrals in the likelihood function and its derivatives, we propose to approximate the integrals either by Monte Carlo simulation or by a quadrature method and then determine the maximum likelihood estimates of the parameters in the model. We explore the properties of the proposed frailty model and the computation method through a simulation study. The study shows that the proposed model can potentially reduce errors in the estimation, and that it provides a viable alternative for correlated data. The merits of proposed model are demonstrated in analysing the effects of sublingual nitroglycerin and oral isosorbide dinitrate on angina pectoris of coronary heart disease patients based on the data set in Danahy et al. (sustained hemodynamic and antianginal effect of high dose oral isosorbide dinitrate. Circulation 1977; 55:381-387).

Angina Pectoris↗

PubMed2006

Quantum mechanical investigations of the N(4S)+O2(X 3Sigmag -)-->NO(X 2Pi)+O(3P) reaction.

The reaction between energetic nitrogen atoms and oxygen molecules has received important attention in connection with nitric oxide chemistry in the lower thermosphere. We report time-independent quantum mechanical calculations of the N(4S)+O2-->NO+O reaction employing the X 2A' and a 4A' electronic potential energy surfaces of Sayos et al. [J. Chem. Phys. 117, 670 (2002)]. We confirm the production of highly vibrationally excited NO molecules, consistent with previous semiclassical and more recent time-dependent quantum wave packet studies. Calculations are carried out for total angular momentum quantum number J=0 and cross sections and rate coefficients are extracted using the J-shifting approximation. The results are in good agreement with available experimental and theoretical data.

Journal Article↗

PubMed2006

Quenching of rotationally excited CO by collisions with H2.

Quantum close-coupling and coupled-states approximation scattering calculations of rotational energy transfer in CO due to collisions with H2 are presented for collision energies between 10(-6) and 15,000 cm(-1) using the H2-CO interaction potentials of Jankowski and Szalewicz [J. Chem. Phys. 123, 104301 (2005); 108, 3554 (1998)]. State-to-state cross sections and rate coefficients are reported for the quenching of CO initially in rotational levels j2 = 1-3 by collisions with both para- and ortho-H2. Comparison with the available theoretical and experimental results shows good agreement, but some discrepancies with previous calculations using the earlier potential remain. Interestingly, elastic and inelastic cross sections for the quenching of CO (j2 = 1) by para-H2 reveal significant differences at low collision energies. The differences in the well depths of the van der Waals interactions of the two potential surfaces lead to different resonance structures in the cross sections. In particular, the presence of a near-zero-energy resonance for the earlier potential which has a deeper van der Waals well yields elastic and inelastic cross sections that are about a factor of 5 larger than that for the newer potential at collision energies lower than 10(-3) cm(-1).

Journal Article↗

PubMed2006

Dynamics of the O(3P) + H2 reaction at low temperatures: comparison of quasiclassical trajectory with quantum scattering calculations.

Quasiclassical trajectory and quantum-mechanical scattering calculations are reported for the O((3)P) + H(2)(X (1)Sigma(g) (+);upsilon = 1-3,j = 0)-->OH(X (2)Pi) + H((2)S) reaction at energies close to the reaction threshold. The dynamics of the reaction have been investigated for zero total angular momentum using the lowest (3)A" potential-energy surface developed by Rogers et al. [J. Phys. Chem. A 104, 2308 (2000)] and its recent extensions by Brandao et al. [J. Chem. Phys. 121, 8861 (2004)] which provide an improved description of the van der Waals interaction. Good agreement is observed for this system between quasiclassical and quantal results for incident kinetic energies above the tunneling regime. Quantum-mechanical calculations also confirm recent theoretical predictions of a strong collision-energy dependence of the OH(v(') = 0)OH(v' = 1) product branching ratio in the O((3)P) + H(2)(v = 1) reaction, which explains the differences observed in OH vibrational populations between experiments using different O((3)P) sources.

Journal Article↗

PubMed2006

Osmotic nephropathy resulting from maltose-based intravenous immunoglobulin therapy.

Intravenous immunoglobulin preparations are being used for an increasing number of indications. To minimize adverse reactions, sugar additives such as sucrose, maltose, and glycine are added to some preparations to serve as stabilizing agents. Intravenous immunoglobulin infusion induces acute renal failure (ARF) via a mechanism of osmotic nephrosis. Most reported cases are related to the use of sucrose-based intravenous immunoglobulin. Herein, we describe a patient with lupus nephritis treated with an immunoglobulin preparation containing maltose who developed ARF with histologic changes characterized by vacuolization and swelling of renal proximal tubular cells. Our case draws nephrologists' attention to the potential of maltose-based immunoglobulin in producing renal failure. Awareness and exercising caution in high-risk groups is elementary to the prevention of this condition.

Acute Kidney Injury↗

PubMed2005

Reactivity enhancement of ultracold O(3P)+H2 collisions by van der Waals interactions.

The role of van der Waals forces in O((3)P)+H(2)(upsilon=1,j=0) collisions is investigated theoretically at low and ultralow temperatures. Quantum scattering calculations have been performed for zero total angular momentum using the lowest London-Eyring-Polanyi-Sato double-polynomial (3)A(") potential-energy surface reported by [Rogers et al., J. Phys. Chem. A 104, 2308 (2000)] and its recent BMS1 and BMS2 extensions developed by [Brandao et al., J. Chem. Phys. 121, 8861 (2004)] which provide a more accurate treatment of the van der Waals interaction. Our calculations show that van der Waals forces strongly influence chemical reactivity at ultracold translational energies. The presence of a zero-energy resonance for the BMS1 surface is found to enhance reactivity in the ultracold regime and shift the Wigner threshold to lower temperatures.

Journal Article↗

PubMed2005

Close-coupling study of rotational energy transfer of CO (upsilon=2) by collisions with He atoms.

Quantum close-coupling scattering calculations of rotational energy transfer in the vibrationally excited CO due to collisions with He atom are presented for collision energies between 10(-5) and approximately 1000 cm-1 with CO being initially in the vibrational level upsilon=2 and rotational levels j=0,1,4, and 6. The He-CO interaction potential of Heijmen et al. [J. Chem. Phys. 107, 9921 (1997)] was adopted for the calculations. Cross sections for rovibrational transitions and state-to-state rotational energy transfer from selected initial rotational levels were computed and compared with recent measurements of Carty et al. [J. Chem. Phys. 121, 4671 (2004)] and available theoretical results. Comparison in all cases is found to be excellent, providing a stringent test for the scattering calculations as well as the reliability of the He-CO interaction potential by Heijmen et al.

Journal Article↗

PubMed2005

A close-coupling study of vibrational-rotational quenching of CO by collision with hydrogen atoms.

Quantum-mechanical scattering calculations were performed for the rovibrational relaxation of CO in collisions with H atoms using the close-coupling approach for collision energies between 10(-6) and 1500 cm(-1). We adopted the H-CO interaction potential of Werner, Keller, and Schinke and computed the state-to-state and total cross sections for the quenching of the upsilon=1, j=0-2 levels of CO. Numerous resonances, as a consequence of the van der Waals potential, are observed and the cross sections are found to approach the Wigner limit at low energies. Also, by averaging the cross sections over a Boltzmann distribution of velocities of the incoming atom, quenching rate coefficients are obtained and found to be consistent with previous infinite-order sudden approximation calculations for temperatures between 100 and 300 K.

Journal Article↗

PubMed2005

Heavy atom tunneling in chemical reactions: study of H + LiF collisions.

The H+LiF(X (1)sigma(+),upsilon=0-2,j=0)-->HF(X (1)sigma(+),upsilon',j')+Li(2S) bimolecular process is investigated by means of quantum scattering calculations on the chemically accurate X 2A' LiHF potential energy surface of Aguado et al. [A. Aguado, M. Paniagua, C. Sanz, and J. Roncero, J. Chem. Phys. 119, 10088 (2003)]. Calculations have been performed for zero total angular momentum for translational energies from 10(-7) to 10(-1) eV. Initial-state selected reaction probabilities and cross sections are characterized by resonances originating from the decay of metastable states of the H...F-Li and Li...F-H van der Waals complexes. Extensive assignment of the resonances has been carried out by performing quasibound states calculations in the entrance and exit channel wells. Chemical reactivity is found to be significantly enhanced by vibrational excitation at low temperatures, although reactivity appears much less favorable than nonreactive processes due to the inefficient tunneling of the relatively heavy fluorine atom strongly bound in van der Waals complexes.

Journal Article↗

PubMed2005

Quantum dynamics of the Li + HF --> H + LiF reaction at ultralow temperatures.

Quantum-mechanical calculations are reported for the Li+HF(v=0,1,j=0)-->H+LiF(v',j') bimolecular scattering process at low and ultralow temperatures. Calculations have been performed for zero total angular momentum using a recent high-accuracy potential-energy surface for the X2A' electronic ground state. For Li+HF(v=0,j=0), the reaction is dominated by resonances due to the decay of metastable states of the Li cdots,...F-H van der Waals complex. Assignment of these resonances has been carried out by calculating the eigenenergies of the quasibound states. We also find that while chemical reactivity is greatly enhanced by vibrational excitation, the resonances get mostly washed out in the reaction of vibrationally excited HF with Li atoms. In addition, we find that at low energies, the reaction is significantly suppressed due to the less-efficient tunneling of the relatively heavy fluorine atom.

Journal Article↗

PubMed2005

Quantum mechanical investigation of rovibrational relaxation of H2 and D2 by collisions with Ar atoms.

We report quantum mechanical calculations of cross sections and rate coefficients for rovibrational relaxation of H2 and D2 by collisions with Ar atoms over a wide range of temperatures including the ultracold limit. Limiting values of the rate coefficients for vibrational and rotational quenching at zero temperature were computed and sensitivity of the results to the choice of the interaction potential is investigated. We also demonstrate dramatic change in the behavior of the rate coefficients at low temperatures when the van der Waals potential supports a quasibound level very close to the dissociation threshold.

Journal Article↗

PubMed2005

Close-coupling calculations of low-energy inelastic and elastic processes in 4He collisions with H2: A comparative study of two potential energy surfaces.

The two most recently published potential energy surfaces (PESs) for the HeH2 complex, the so-called MR (Muchnick and Russek) and BMP (Boothroyd, Martin, and Peterson) surfaces, are quantitatively evaluated and compared through the investigation of atom-diatom collision processes. The BMP surface is expected to be an improvement, approaching chemical accuracy, over all conformations of the PES compared to that of the MR surface. We found significant differences in inelastic rovibrational cross sections computed on the two surfaces for processes dominated by large changes in target rotational angular momentum. In particular, the H2(nu=1,j=0) total quenching cross section computed using the BMP potential was found to be a factor of 1000 larger than that obtained with the MR surface. A lesser discrepancy persists over a large range of energies from the ultracold to thermal and occurs for other low-lying initial rovibrational levels. The MR surface was used in previous calculations of the H2(nu=1,j=0) quenching rate coefficient and gave results in close agreement with the experimental data of Audibert et al. which were obtained for temperatures between 50 and 300 K. Examination of the rovibronic coupling matrix elements, which are obtained following a Legendre expansion of the PES, suggests that the magnitude of the anisotropy of the BMP potential is too large in the interaction region. However, cross sections for elastic and pure rotational processes obtained from the two PESs differ typically by less than a factor of 2. The small differences may be ascribed to the long-range and anharmonic components of the PESs. Exceptions occur for (nu=10,j=0) and (nu=11,j=1) where significant enhancements have been found for the low-energy quenching and elastic cross sections due to zero-energy resonances in the BMP PES which are not present in the MR potential.

Journal Article↗

PubMed2005

A prospective evaluation of leflunomide therapy for cytomegalovirus disease in renal transplant recipients.

AIM: A preliminary observation suggests leflunomide is effective in the treatment of cytomegalovirus (CMV) disease in renal transplant recipients. A prospective evaluation was conducted in renal transplant recipients to study the efficacy of leflunomide in the treatment of CMV disease. PATIENTS AND METHODS: With prior approval and informed consent for therapy and follow-up, 17 consecutive consenting renal transplant recipients with proven CMV disease were treated with leflunomide. CMV disease was defined as a clinical syndrome of fever and/or symptoms of organ involvement, leukopenia, and a positive nested CMV quantitative PCR test at 0.001 microg/5 microL template input, with or without histologic evidence of tissue invasion. Leflunomide metabolite concentrations (A77 1726) were monitored. RESULTS: Of the 17 patients, 14 patients were treated for 6 months for CMV disease the first time; the remaining 3 received leflunomide treatment for relapse after ganciclovir treatment, for a year. Seven patients had fever with viremia and no organ involvement, nine had viremia with involvement of gastrointestinal tract, and one had fever with CMV inclusions in the allograft, with no demonstrable viremia. The three patients with relapse treated with leflunomide responded. Overall, 15 patients (88%) clinically responded to leflunomide therapy and with viral clearance from blood and healing of involved organs. The cost of therapy with intravenous ganciclovir (Cymevene, Roche) for 2 weeks was US 721 dollars while that of leflunomide (Cleft, Cipla Ltd) for 6 months was US 64 dollars. CONCLUSION: Leflunomide treatment for CMV disease in renal transplant recipients is effective, simple, and economical.

Adult↗

PubMed2004

Isotope branching and tunneling in O(3P)+HD-->OH+D; OD+H reactions.

The O((3)P)+HD and O((3)P)+D(2) reactions are studied using quantum scattering calculations and chemically accurate potential energy surfaces developed for the O((3)P)+H(2) system by Rogers et al. [J. Phys. Chem. A 104, 2308 (2000)]. Cross sections and rate coefficients for OH and OD products are calculated using accurate quantum methods as well as the J-shifting approximation. The J-shifting approach is found to work remarkably well for both O+HD and O+D(2) collisions. The reactions are dominated by tunneling at low temperatures and for the O+HD reaction the hydrogen atom transfer leading to the OH product dominates at low temperatures. Our result for the OH/OD branching ratio is in close agreement with previous calculations over a wide range of temperatures. The computed OH/OD branching ratios are also in close agreement with experimental results of Robie et al. [Chem. Phys. Lett. 134, 579 (1987)] at temperatures above 400 K but the theoretical results do not reproduce the rapid rise in the experimental values of the branching ratio for temperatures lower than 350 K. We believe that new measurements could resolve the long-standing discrepancy between experiment and theory for this benchmark reaction.

Journal Article↗

PubMed2004

Quantum calculations of the O(3P)+H2-->OH+H reaction.

Quantum scattering calculations are reported for the O(3P)+H2(v=0,1) reaction using chemically accurate potential energy surfaces of 3A' and 3A" symmetry. We present state-to-state reaction cross sections and rate coefficients as well as thermal rate coefficients for the title reaction using accurate quantum calculations. Our calculations yield reaction cross sections that are in quantitative accord with results of recent crossed molecular beam experiments. Comparisons with results obtained using the J-shifting calculations show that the J-shifting approximation is quite reliable for this system. Thermal rate coefficients from the exact calculations and the J-shifting approximation agree remarkably well with experimental results. Our calculations also reproduce the markedly different OH(v'=0)/OH(v'=1) branching in O(3P)+H2(v=1) reaction, observed in experiments that use different O(3P) atom sources. In particular, we show that the branching ratio is a strong function of the kinetic energy of the O(3P) atom.

Journal Article↗

PubMed2004

On the role of van der Waals interaction in chemical reactions at low temperatures.

It is shown that van der Waals interaction potential plays a crucial role in chemical reactions at low temperatures. By taking the Cl+HD reaction as an illustrative example, we demonstrate that quasibound states of the van der Waals potential preferentially undergo chemical reaction rather than vibrational predissociation. Prereaction occurs even when the wave functions of the quasibound states peak far out into the entrance channel, outside the region of the van der Waals well. It is found that chemical reaction dominates over nonreactive vibrational quenching in collisions of vibrationally excited HD molecules with ground state chlorine atoms at ultracold temperatures.

Journal Article↗