Biomedical subjects

Mark E Fenn

Publications and source records attributed to Mark E Fenn.

3 recordsLinked to original sources

PubMed2005

Autotrophic ammonia-oxidizing bacteria contribute minimally to nitrification in a nitrogen-impacted forested ecosystem.

Deposition rates of atmospheric nitrogenous pollutants to forests in the San Bernardino Mountains range east of Los Angeles, California, are the highest reported in North America. Acidic soils from the west end of the range are N-saturated and have elevated rates of N-mineralization, nitrification, and nitrate leaching. We assessed the impact of this heavy nitrogen load on autotrophic ammonia-oxidizing communities by investigating their composition, abundance, and activity. Analysis of 177 cloned beta-Proteobacteria ammonia oxidizer 16S rRNA genes from highly to moderately N-impacted soils revealed similar levels of species composition; all of the soils supported the previously characterized Nitrosospira clusters 2, 3, and 4. Ammonia oxidizer abundance measured by quantitative PCR was also similar among the soils. However, rates of potential nitrification activity were greater for N-saturated soils than for soils collected from a less impacted site, but autotrophic (i.e., acetylene-sensitive) activity was low in all soils examined. N-saturated soils incubated for 30 days with ammonium accumulated additional soluble ammonium, whereas less-N-impacted soils had a net loss of ammonium. Lastly, nitrite production by cultivated Nitrosospira multiformis, an autotrophic ammonia-oxidizing bacterium adapted to relatively high ammonium concentrations, was significantly inhibited in pH-controlled slurries of sterilized soils amended with ammonium despite the maintenance of optimal ammonia-oxidizing conditions. Together, these results showed that factors other than autotrophic ammonia oxidizers contributed to high nitrification rates in these N-impacted forest soils and, unlike many other environments, differences in nitrogen content and soil pH did not favor particular autotrophic ammonia oxidizer groups.

Ammonia↗

PubMed2002

A throughfall collection method using mixed bed ion exchange resin columns.

Measurement of ionic deposition in throughfall is a widely used method for measuring deposition inputs to the forest floor. Many studies have been published, providing a large database of throughfall deposition inputs to forests. However, throughfall collection and analysis is labor intensive and expensive because of the large number of replicate collectors needed and because sample collection and chemical analyses are required on a stochastic precipitation event-based schedule. Therefore we developed and tested a throughfall collector system using a mixed bed ion exchange resin column. We anticipate that this method will typically require only one to three samplings per year. With this method, bulk deposition and bulk throughfall are collected by a funnel or snow tube and ions are retained as the solution percolates through the resin column. Ions retained by the resin are then extracted in the same column with 2 N KCl and analyzed for nitrate and ammonium. Deposition values in throughfall from conventional throughfall solution collectors and colocated ion exchange samplers were not significantly different during consecutive 3- and 4-month exposure periods at a high (Camp Paivika; >35 kg N ha(-1) year(-1)) and a low deposition (Barton Flats; 5-9 kg N ha(-1) year(-1)) site in the San Bernardino Mountains in southern California. N deposition in throughfall under mature pine trees at Camp Paivika after 7 months of exposure was extremely high (87 and 92 kg ha-1 based on the two collector types) compared to Barton Flats (11 and 13 kg ha(-1)). A large proportion of the N deposited in throughfall at Camp Paivika occurred as fog drip, demonstrating the importance of fog deposition as an input source of N at this site. By comparison, bulk deposition rates in open areas were 5.1 and 5.4 kg ha(-1) at Camp Paivika based on the two collector types, and 1.9 and 3.0 kg ha(-1) at Barton Flats.

Ammonia↗

PubMedDate not supplied

Monitoring nitrogen deposition in throughfall using ion exchange resin columns: a field test in the San Bernardino Mountains.

Conventional throughfall collection methods are labor intensive and analytically expensive to implement at broad scales. This study was conducted to test an alternative approach requiring infrequent sample collection and a greatly reduced number of chemical analyses. The major objective of the study was to determine the feasibility of using ion exchange resin (IER) to measure N deposition in throughfall with field deployment periods of 3 to 12 mo. Nitrogen deposition measurements in bulk throughfall collected under pine (Pinus sp.) canopies and in forest clearings were compared between co-located conventional throughfall solution collectors and IER throughfall collectors using mixed bed IER columns. Deposition data were collected for 1 yr at a high deposition site (Camp Paivika, CP) and a relatively low one (Barton Flats, BF) in the San Bernardino Mountains in southern California: Annual throughfall deposition values (kg ha(-1) of NH(4)-N + NO(3)-N) under large ponderosa pine trees (Pinus ponderosa Laws.) were 145.8 and 143.9 at CP and 17.0 and 15.0 at BF according to the IER and conventional methods, respectively. Analogous values for bulk deposition in forest clearings were 15.6 and 12.3 at CP and 4.0 and 3.3 at BF. It was concluded that the IER collectors can be used for routine monitoring of deposition in throughfall and bulk deposition, provided that field blanks are used to account for background levels of N in the IER columns, which at times are slightly elevated, possibly from slow release of amine groups from the anion exchange resin during field exposures.

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