Corannulene "hub" carbon coordination by [Ru2{O2C(3,5-CF3)2C6H3}2(CO)5].
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Carbon↗
Biomedical subjects
Marina A Petrukhina
Publications and source records attributed to Marina A Petrukhina.
X-ray and density functional theory structural study of 1,3,5,7,9-penta-tert-butylcorannulene, C40H50.
The first X-ray structural characterization of an alkyl-substituted corannulene, namely, 1,3,5,7,9-penta-tert-butylcorannulene (C40H50), has been accomplished. The addition of bulky tert-butyl groups to the corannulene core flattens the bowl and affects the solid-state packing. The presence of two enantiomers, in addition to positional disorder of the C40H50 bowls in the solid-state structure, has prevented the acquisition of accurate geometric parameters of this open geodesic polyarene. Therefore, DFT calculations have been used to describe its molecular geometry and to access bond lengths, bond angles, and a bowl depth.
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Unligated diruthenium(II,II) tetra(trifluoroacetate): the first X-ray structural study, thermal compressibility, Lewis acidity, and magnetism.
The title compound, [Ru(2)(O(2)CCF(3))(4)] (1), has been obtained without any exogenous ligands and crystallized by deposition from the gas phase at 170 degrees C. Its crystal structure has been determined for the first time to confirm an infinite chain motif built on axial Ru...O interactions of the diruthenium(II,II) units. The X-ray diffraction studies at variable temperatures showed no phase transitions in the range of 295-100 K but revealed a significant decrease in the volume per atom from 14.2 to 13.3 A(3). This noticeable thermal compressibility effect is discussed in connection with the solid-state packing of the [Ru(2)(O(2)CCF(3))(4)](infinity) chains. The highly electrophilic character of the diruthenium(II,II) units has been shown by the gas-phase deposition reaction of [Ru(2)(O(2)CCF(3))(4)] with an aromatic donor substrate, namely [2.2]paracyclophane (C(16)H(16)). As a result of the above reaction, a new arene adduct [Ru(2)(O(2)CCF(3))(4).C(16)H(16)] (2) has been isolated in crystalline form. It has an extended one-dimensional (1D) chain structure comprised of alternating building units and based on the rare bridging mode of [2.2]paracyclophane, [Ru(2)(O(2)CCF(3))(4).(mu(2)-eta(2):eta(2)-C(16)H(16))](infinity). The magnetic susceptibility of 1 and 2 has been measured and compared in the range of 1.8-300 K. In addition, in the course of synthesis of 1 by the carboxylate exchange reactions, a new mixed-carboxylate diruthenium(II,II) core complex [Ru(2)(O(2)CCF(3))(3)(O(2)CC(2)H(5))] (3), bearing no exogenous ligands, has also been isolated and structurally characterized. It exhibits an interesting polymeric structure in which the ruthenium(II) centers selectively form axial interdimer contacts with the O-atoms of the propionate groups only.
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Dimethyl selenoxide.
The title molecule, C2H6OSe, has a trigonal-pyramidal structure analogous to that of its sulfur analog, dimethyl sulfoxide (DMSO). The Se-O distance in dimethyl selenoxide (DMSeO) is 1.6756 (16) A [versus S-O of 1.531 (5) A in DMSO], consistent with a highly polar bond. In the solid state, the molecules of DMSeO are linked into centrosymmetric dimers formed by two C-H...O hydrogen bonds. These dimers further aggregate into a ladder-like supramolecular network via two additional intermolecular C-H...O interactions. As a result, each O atom of DMSeO acts as an acceptor of three hydrogen bonds.
Dimethyl Sulfoxide↗
X-ray quality geometries of geodesic polyarenes from theoretical calculations: what levels of theory are reliable?
[structure: see text] Computational methods for calculating molecular geometries have not been well calibrated heretofore against X-ray data for bowl-shaped polycyclic aromatic hydrocarbons (PAHs). The analysis presented here capitalizes on a rare opportunity provided by corannulene to account explicitly for molecular distortions from crystal packing forces. Within the error limits of an extensive X-ray data set, B3LYP/6-31G* calculations were found to correctly reproduce all of the experimental bond distances and bond angles. The reliability and shortcomings of geometry calculations at other levels of theory are enumerated.
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Coordination chemistry of buckybowls: from corannulene to a hemifullerene.
This work highlights the progress made in coordination chemistry of transition-metal centers to open geodesic polyaromatic hydrocarbons that map onto the surface of C60, the family of compounds known as buckybowls or 'fullerene fragments'. In particular, an overview of our recent gas-phase coordination studies of several bowl-shaped polyarenes toward the dinuclear metal complex, [Rh2(O2CCF3)4], is given. Selected buckybowls include corannulene (C20H10) and two of its derivatives, namely dibenzo[a,g]corannulene (C28H14) and 1,3,5,7,9-penta-tert-butylcorannulene (C40H50), as well as a hemifullerene (C30H12). This study has resulted in the first X-ray structural characterization of buckybowl coordination complexes and has revealed eta2-rim coordination preferences of open geodesic polyarenes in rhodium(ii) binding reactions.
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Coordination polymers formed in solution and in solvent-free environment. Structural transformation due to interstitial solvent removal revealed by X-ray powder diffraction.
The crystal-to-powder transformation induced by solvent removal has been examined through a direct comparison of the structures of the solvated and the unsolvated coordination products determined by single crystal and powder X-ray diffraction, respectively.
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1,4-Bis(p-tolylethynyl)benzene.
The rod-like molecule of the title hydrocarbon, C24H18, is centrosymmetric, with the centroid of the central benzene ring residing on an inversion center. The molecules display a planar conformation of the benzene rings and aggregate into stacks along the [010] direction via Csp(3)-H...pi(arene) interactions, thus forming a stair-like pseudo-two-dimensional network. Each molecule acts as both a C-H hydrogen donor and a pi-arene acceptor, forming four hydrogen bonds per molecule.
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Spirocyclic sulfur and selenium ligands as molecular rigid rods in coordination of transition metal centers.
A set of analogous chalcogen-containing spirocycles, 2,6-dithiaspiro[3.3]heptane, 2,6-diselenaspiro[3.3]heptane, and 2-thia-6-selenaspiro[3.3]heptane [E(2)C(5)H(8), E = S (1), Se (2), and S/Se (3)], has been prepared and fully characterized by spectroscopic methods and by X-ray diffraction. The structural characterization of 2 was presented by us earlier, while the crystal structures of 1 and 3 are reported here for the first time. Molecules 1-3 are built around the central tetrahedral carbon atom and therefore are nonplanar. The E...E separation ranges from 4.690(1) A in 1 to 4.906(1) A in 2. Molecule 3 has statistically mixed positions of sulfur and selenium atoms in the solid state with all geometric characteristics being intermediate between those of 1 and 2. Compounds 2 and 3 have been tested as molecular rigid rod ligands in coordination reactions with transition metal complexes such as Cu(hfac)(2) (4), cis-Co(hfac)(2).2H(2)O (5), and cis-Ni(hfac)(2).2H(2)O (6) (hfac = hexafluoroacetylacetonate). Several coordination products built of two building blocks, M(hfac)(2) (M = Cu, Co, and Ni) and Se(2)C(5)H(8) (2), have been prepared in crystalline form and structurally characterized. The copper-based product (7) is comprised of the oligomeric units {[Cu(hfac)(2)](3).2mu(2)-Se(2)C(5)H(8)-Se,Se'} built on the axial Cu...Se interactions averaged at 2.909 A. These units are further assembled into 1D polymeric chains via intermolecular Cu...F contacts at 2.829 A. The SSeC(5)H(8) (3) ligand was also used in the reaction with Cu(hfac)(2) to afford an analogue of 7, namely {[Cu(hfac)(2)](3).2mu(2)-SSeC(5)H(8)-S,Se} (8). Complex 8 exhibits statistically mixed positions of the donor sulfur and selenium atoms to give an average axial Cu...S/Se contact at 2.892 A. In contrast to the copper complexes of composition 3:2, the stoichiometries of the isolated cobalt and nickel products are 1:1, [M(hfac)(2).Se(2)C(5)H(8)] (M = Co (9) and Ni (10)). Complexes 9 and 10 exhibit 1D polymer structures having alternating metal units cis-M(hfac)(2) and ligands 2 with intermolecuar M...Se separations of 2.6046(8) and 2.5523(16) A, respectively. In all products 7-10 the initial cis or trans geometry of M(hfac)(2) complexes is preserved and the spiro[3.3]heptane ligands act as bidentate linkers bridging transition metal centers via both donor ends. The magnetic properties of this series of new Cu(II), Co(II), and Ni(II) complexes have been tested by variable-temperature magnetic susceptibility measurements.
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Bulk material vs. single crystal: powder diffraction to the rescue.
The crystal structure of bulk microcrystalline material obtained by interaction of two rigid building blocks, namely dirhodium(ii) tetra(trifluoroacetate), [Rh2(O2CCF3)4], and bis(4'-pyridyl)diphenylsilane, (C6H5)2Si(C5H4N)2, has been solved ab initio using X-ray powder diffraction data. The title product of the 1 [ratio] 1 composition, [Rh2(O2CCF3)4.(mu2-(C6H5)2Si(C5H4N)2)], is a one-dimensional zigzag polymer built on axial Rh...N interactions averaged at 2.16 A. Its structural characterization complements the previously reported product of the 2:1 composition obtained from the same reaction, namely {[Rh2(O2CCF3)4]2.(mu4-(C6H5)2Si(C5H4N)2)}. The latter has a 2D layered network revealed by the single crystal diffraction study. A combination of powder and single crystal X-ray techniques is shown to be methodologically important and complementary for understanding of product assembling in the system.
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Hemibuckminsterfullerene C(30)H(12): X-ray crystal structures of the parent hydrocarbon and of the two-dimensional organometallic network [[Rh(2)(O(2)CCF(3))(4)](3)x(C(30)H(12))].
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Crystallography, X-Ray↗
Powder diffraction study of a coordination polymer comprised of rigid building blocks: [Rh2(O2CCH3)4.mu2-Se2C5H8-Se,Se']infinity.
The crystal structure of a new hybrid product comprised of two rigid building blocks, namely dirhodium(II) tetraacetate, [Rh(2)(O(2)CCH(3))(4)] (1), and 2,6-diselenaspiro[3.3]heptane, Se(2)C(5)H(8) (2), has been solved ab initio using laboratory source X-ray powder diffraction (XRPD) data. The rigid body refinement approach has been applied to assist in finding an adequate model and to reduce the number of the refined parameters. Complex [Rh(2)(O(2)CCH(3))(4).mu(2)-Se(2)C(5)H(8)-Se,Se'] (3) conforms to the triclinic unit cell with lattice parameters of a = 8.1357(4), b = 8.7736(4), and c = 15.2183(8) A, alpha = 77.417(3), beta = 88.837(3), and gamma = 69.276(4) degrees, V = 989.66(8) A(3), and Z = 2. The centrosymmetric P space group was selected for calculations. The final values of the reduced wR(p), R(p), and chi(2) were calculated at 0.0579, 0.0433, and 5.95, respectively. The structure of 3 is a one-dimensional zigzag polymer built on axial Rh...Se interactions at 2.632(6) A. The 2,6-diselenaspiro[3.3]heptane ligand acts as a bidentate linker bridging dirhodium units via both selenium atoms. The geometrical parameters of individual groups for rigid body refinement have been obtained from X-ray powder data for dirhodium(II) tetraacetate (1) and from single-crystal X-ray diffraction for diselenium molecule 2. The crystal structures of 1 and 2 are reported here for the first time. For 1 indexing based on XRPD data has resulted in the triclinic unit cell P with lattice parameters of a = 8.3392(7), b = 5.2216(5), and c = 7.5264(6) A, alpha = 95.547(10), beta = 78.101(6), and gamma = 104.714(13) degrees, V = 309.51(5) A(3), and Z = 1. The final values were wR(p) = 0.0452, R(p) = 0.0340, and chi(2) = 1.99. The 1D polymeric motif built on axial Rh.O interactions of the centrosymmetric dirhodium units has been confirmed for the solid-state structure of 1. Compound 2,6-diselenaspiro[3.3]heptane (2) conforms to the monoclinic space group P2(1)/c with the unit cell parameters of a = 5.9123(4), b = 19.6400(13), and c = 5.8877(4) A, beta = 108.5500(10) degrees, V = 648.15(8) A(3), and Z = 4.
Copper↗
On the road to a termolecular complex with acetone: a heterometallic supramolecular network [[Rh(2)(O(2)CCF(3))(4)].micro(2)-OCMe(2).[Cu(4)(O(2)CCF(3))(4)]].
A novel heterometallic supramolecular network [[Rh(2)(O(2)CCF(3))(4)].micro(2)-OCMe(2).[Cu(4)(O(2)CCF(3))(4)]](2)( infinity ) has been prepared by codeposition of the volatile mono(acetone) adduct [Rh(2)(O(2)CCF(3))(4).eta(1)-OCMe(2)](2) and copper(I) trifluoroacetate, [Cu(4)(O(2)CCF(3))(4)]. The product is of interest from the viewpoints of gas-phase supramolecular synthesis and a rare bridging coordination mode of acetone. It has been fully characterized by IR and NMR spectroscopy, elemental analysis, and X-ray diffraction. An X-ray structure revealed a layered 2D arrangement of the heterometallic [[Rh(2)(O(2)CCF(3))(4)].micro(2)-OCMe(2).[Cu(4)(O(2)CCF(3))(4)]] units built by axial intermolecular interactions of the open electrophilic Rh(II) and Cu(I) centers and O-atoms of neighboring carboxylate groups. The coordination of the acetone molecules within the [[Rh(2)(O(2)CCF(3))(4)].micro(2)-OCMe(2).[Cu(4)(O(2)CCF(3))(4)]] unit is asymmetric with the Rh-O and Cu-O distances being 2.2173(15) and 2.7197(17) A, respectively. This work shows the potential of gas-phase deposition that may provide additional possibilities in supramolecular synthesis by utilizing intermolecular interactions and coordination bonds in a new way compared with conventional solution chemistry.
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The first coordination complexes of selenones: a structural comparison with complexes of sulfones.
Reactivity of the two classes of very weak donors R(2)XO(2) (X = S, R = Me (1) and Ph (2); X = Se, R = Me (3) and Ph (4)) have been studied. Coordination properties of sulfones and selenones in solution and in the gas phase have been compared for the first time using a model bidentate metal complex, [Rh(2)(O(2)CCF(3))(4)]. Two coordination modes, bridging mu(2)-O,O' and terminal eta(1)-O, have been detected. These types of binding were realized in two series of sulfone and selenone metal complexes, polymeric mono-adducts [Rh(2)(O(2)CCF(3))(4).(R(2)XO(2))]( infinity ) (X = S, R = Me (1a); R = Ph (2a); X = Se, R = Ph (4a)) and discrete bis-adducts [Rh(2)(O(2)CCF(3))(4).(R(2)XO(2))(2)] (X = S, R = Ph (2b); X = Se, R = Me (3b)). The compositions and structures of new compounds have been confirmed by NMR and IR spectroscopy, chemical analyses, and X-ray diffraction studies. Compounds 3b and 4a are the first crystallographically characterized metal complexes having selenone ligands coordinated to the metal centers. Preparation and X-ray study of analogous metal complexes of sulfone and selenone ligands allow, for the first time, tracking the structural changes induced by metal coordination. In addition, the X-ray structure of dimethyl selenone, Me(2)SeO(2) (3), an analogue of Me(2)SO(2), has been determined. Geometries of coordinated sulfone and selenones ligands have been compared with those of the corresponding "free" molecules.
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Transition-metal complexes of an open geodesic polyarene.
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Journal Article↗
Small organoselenium molecules. 1. Dimethyl selenoxide: structure, complexation, and gas-phase transformation.
For the first time the structural characterization of dimethyl selenoxide coordinated to metal complexes has been performed confirming the Me(2)SeO arrangement assigned by spectroscopic techniques for the molecule in solution and solid state. The structure of Me(2)SeO is trigonal pyramidal with Se-O and Se-C bond lengths of 1.70 and 1.92 A, respectively, and sigma(X-Se-Y) = 301 degrees. As a ligand, dimethyl selenoxide was found to bind to the rhodium centers of various Lewis acidity strengths by using only its oxo functionality in both terminal and bridging fashions. This O-directed coordination preference contrasts with an ambidentate (-S and -O) binding character revealed by dimethyl sulfoxide upon formation of analogous donor-acceptor complexes. The study of dimethyl selenoxide in the gas phase at 135-140 degrees C resulted in a thermal degradation of this molecule. The major decomposition product has been entrapped by a metal complex and identified as dimethyl selenide. The isolation of the coordinated Me(2)Se fragment clearly demonstrates that the Me(2)SeO molecule is less thermally stable than Me(2)SO, which under similar reaction conditions shows no sign of decomposition at temperatures up to 160 degrees C.
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Supramolecular assemblies of dimetal complexes with polydentate N-donor ligands: from a discrete pyramid to a 3D channel network.
Reactions of a dinuclear metal complex in the form of dirhodium(II) tetra(trifluoroacetate), [Rh(2)(O(2)CCF(3))(4)] (1), with a number of strong N-donor ligands having functional groups rigidly oriented at different directing angles have been found to yield supramolecular architectures of differing complexity. All structures have been established by X-ray crystallography. From reaction of 1 with neutral tris(4'-pyridyl)methylsilane ligand, CH(3)Si(C(5)H(4)N)(3) (L1), a discrete pyramid-shaped hexanuclear complex [[Rh(2)(O(2)CCF(3))(4)](3)CH(3)Si(C(5)H(4)N)(3)(eta(1)-C(6)H(6))(3)].C(6)H(6) (2.C(6)H(6)) has been isolated from benzene. In 2 three molecules of 1 are strongly coordinated to one L1 ligand at only one axial position of each dirhodium unit at the Rh-N distances of 2.152(6) A. The second rhodium atom of each dimetal complex in 2 weakly coordinates a benzene molecule with an Rh-C distance of 2.69(2) A. A supramolecular complex of the composition [[Rh(2)(O(2)CCF(3))(4)](2)(C(6)H(5))(2)Si(C(5)H(4)N)(2)] (3) has been prepared by reacting the dinuclear units 1 with a potentially bidentate ligand, bis(4'-pyridyl)diphenylsilane, (C(6)H(5))(2)Si(C(5)H(4)N)(2) (L2), having two pyridyl groups rigidly oriented at 109 degrees. In 3, one L2 ligand coordinates two dirhodium molecules 1 through their axial positions with the Rh-N distance of 2.150(5) A. An interesting extended 2D layered motif is formed by additional contacts of open axial positions of dirhodium units with phenyl groups of the neighboring ligands at Rh-C distances which average to 2.88(1) A. A supramolecular compound of the composition [[Rh(2)(O(2)CCF(3))(4)](3)(HO)C(C(5)H(4)N)(3)(eta(1)-C(6)H(6))].(1)/(2)C(6)H(6) (4.(1)/(2)C(6)H(6)) has been formed when linear dirhodium units 1 were reacted with tris(4'-pyridyl)methanol (L3) having tetrahedral directing angles that average to 110 degrees. A building block in the solid structure of 4 is a hexanuclear molecule in which one L3 ligand binds three dimetal units of 1 through N atoms of pyridyl groups at the average Rh-N distance of 2.143(7) A. A unique extended pseudo-3D structure in 4 is created by additional Rh-O coordination bonds as well as by weak metal-arene interactions.
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