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M Xiong

Publications and source records attributed to M Xiong.

At least 73 records · Page 4Linked to original sources
PubMed1997

Fine-scale genetic mapping based on linkage disequilibrium: theory and applications.

Linkage-disequilibrium mapping (LDM) recently has been hailed as a powerful statistical method for fine-scale mapping of disease genes. After reviewing its historical background and methodological development, we present a general, mathematical, and conceptually coherent framework for LDM that incorporates multilocus and multiallelic markers and mutational processes at the marker and disease loci. With this framework, we address several issues relevant to fine-scale mapping and propose some efficient computational methods for LDM. We implement various LDM methods that incorporate population growth, recurrent mutation, and marker mutations, on the basis of a general framework. We demonstrate these methods by applying them to published data on cystic fibrosis, Huntington disease, Friedreich ataxia, and progressive myoclonus epilepsy. Since the genes responsible for these diseases all have been cloned, we can evaluate the performance of our methods and can compare ours with that of other methods. Using the proposed methods, we successfully and accurately predicted the locations of genes responsible for these diseases, on the basis of published data only.

Chromosome Mapping↗
PubMed1997

Fine-scale mapping of quantitative trait loci using historical recombinations.

With increasing popularity of QTL mapping in economically important animals and experimental species, the need for statistical methodology for fine-scale QTL mapping becomes increasingly urgent. The ability to disentangle several linked QTL depends on the number of recombination events. An obvious approach to increase the recombination events is to increase sample size, but this approach is often constrained by resources. Moreover, increasing the sample size beyond a certain point will not further reduce the length of confidence interval for QTL map locations. The alternative approach is to use historical recombinations. We use analytical methods to examine the properties of fine QTL mapping using historical recombinations that are accumulated through repeated intercrossing from an F2 population. We demonstrate that, using the historical recombinations, both simple and multiple regression models can reduce significantly the lengths of support intervals for estimated QTL map locations and the variances of estimated QTL map locations. We also demonstrate that, while the simple regression model using historical recombinations does not reduce the variances of the estimated additive and dominant effects, the multiple regression model does. We further determine the power and threshold values for both the simple and multiple regression models. In addition, we calculate the Kullback-Leibler distance and Fisher information for the simple regression model, in the hope to further understand the advantages and disadvantages of using historical recombinations relative to F2 data.

Algorithms↗
PubMed1997

The activity of the scs and scs' insulator elements is not dependent on chromosomal context.

Sequence elements that protect a reporter gene from chromosomal position effects or that block enhancer-activated transcription are called insulators. Using a plasmid-based microinjection assay with Xenopus laevis oocytes, we show that the heterologous Drosophila melanogaster scs and scs' insulator elements do not require chromosomal context to block enhancer-activated transcription. A single insulator element partially blocks enhancer-activated transcription, indicating that each element operates independently rather than as part of a pair. Deletion analysis of the 1.8-kb scs element identified a 220-bp fragment from one of the DNase I-hypersensitive regions that has full blocking activity in the oocyte assay. This fragment corresponds to the critical region of the scs mapped in previous studies with Drosophila. A time course of transcription shows that the scs blocks enhancer-activated transcription as early as transcription can be detected, about 30 min after injection. Complete assembly of the DNA template into nucleosomes requires 4 h. The scs and scs' sequences do not block site-specific recombination by FLP recombinase, implying that insulators do not operate by a general mechanism that physically sequesters the DNA. These data are most consistent with a model for insulator action in which direct interaction between the insulator and either the enhancer or promoter confers directionality to enhancer-activated transcription.

Animals↗
PubMed1997

[Association of epstein-barr virus with lymphoepithelioma-like carcinoma of the lung].

OBJECTIVE: To study the relationship between pulmonary lymphoepithelima-like carcinoma (LELC) and Epstein-Barr virus (EBV). METHODS: 30 cases of LELC and 19 cases of non LELC pulmonary pulmonary specimens were studied by in situ hybridization and immunohistochemistry techniques to detect EB virus small RNA (EBERs), latent menbrane protein-1 (LMP-1) and virus capsid antigen (VCA). RESULTS: The detection rates for EBER, LMP-1 and VCA were 93.3% (28/30), 53.3% (16/30) and 23.3% (7/30) respectively. LMP-1 positive carcinoma cells were not found in the 19 non-LELC specimens, which were used as the controls. CONCLUSION: Pulmonary LELC is closely associated with latent EBV infection and may be an important factor involved in the development and progression of LELC. In addition, EBV lytic gene products may sometimes be found in a small portion of LELC cells.

Adult↗
PubMed1996

What do developmental mapping rules optimize?

Convergence ratios between pre- and postsynaptic cells in the visual system vary widely between cell classes, areas of the visual field, between individuals and between species. Proper stabilization of the convergence and divergence of single visual neurons is critical for visual integration generally, and for specific functions such as those of rod and cone pathways, or the center and peripheral regions of the visual field. In early development, retinal ganglion cells, target cells and all their processes are produced in excess and stabilize at certain mature values. The intent of the investigations described here is to determine what features of cell connectivity are stabilized over normal variability by these developmental processes and how such stabilization is accomplished, using the developing mammalian retinotectal system as an example. Orderly compression of the retinotopic map into a half tectum was induced by a partial tectal ablation at birth in hamsters, increasing the ratio of retinal ganglion cells to superior colliculus target cells. The convergence problem is solved in this case by undersampling the spatial array with respect to normal, preserving local spatial resolution, but potentially reducing sensitivity or introducing aliasing artifacts. Receptive field sizes of single neurons are indistinguishable from normal, and reduction of branching of presynaptic axon arbors is the mechanism of the remapping. Behaviorally, though the entire visual field is still represented in the remaining colliculus, the solution has a cost in decreased probability and increased latency to orient to visual stimuli, particularly in the peripheral visual field. The generality of this solution for retinal and other central convergence regulation problems is evaluated.

Animals↗
PubMed1996

Central implants of dilute estradiol enhance the satiety effect of CCK-8.

The following studies evaluated whether direct placement of estradiol into different brain areas could increase the satiating potency of CCK in female rats. In Experiment 1, estradiol implants in the PVN, but not in the VMN or third ventricle, significantly enhanced the satiety actions of CCK (5.0 micrograms/kg). In Experiment 2, a lower dose of CCK (0.5 micrograms/kg) suppressed food intake in females with estradiol implants in the PVN but not in animals with implants in the VMN or preoptic area. In both experiments, estradiol implants in the PVN significantly lowered food intake and body weight during the 2-day period of hormone treatment. Implants in other areas had no significant effects on feeding or body weight. These data support the hypothesis that the satiety effect of CCK is enhanced by estradiol and suggest that the PVN is involved in the interaction between CCK and estradiol.

Animals↗
PubMed1996

On the consistency of a physical mapping method to reconstruct a chromosome in vitro.

During recent years considerable effort has been invested in creating physical maps for a variety of organisms as part of the Human Genome Project and in creating various methods for physical mapping. The statistical consistency of a physical mapping method to reconstruct a chromosome, however, has not been investigated. In this paper, we first establish that a model of physical mapping by binary fingerprinting of DNA fragments is identifiable using the key assumption-for a large randomly generated recombinant DNA library, there exists a staircase of DNA fragments across the chromosomal region of interest. Then we briefly introduce epi-convergence theory of variational analysis and transform the physical mapping problem into a constrained stochastic optimization problem. By doing so, we prove epi-convergence of the physical mapping model and epi-convergence of the physical mapping method. Combining the identifiability of our physical mapping model and the epi-convergence of a physical mapping method, finally we establish strong consistency of a physical mapping method.

Aspergillus nidulans↗
PubMed1996

Study on insulin resistance in TCM treatment of noninsulin-dependent diabetes mellitus.

In the present paper, it is advanced that in TCM treatment of noninsulin-dependent diabetes mellitus (NIDDM), insulin resistance must be studied; and it is held that reversing or relieving of insulin resistance is the ultimate aim for treating NIDDM, and looking for the prescriptions of reversing the insulin resistance is an urgent task. Therefore, establishing the indexes of comprehensive assessment for the insulin resistance and the related models of the disease is the basis and prerequisite for the study.

Animals↗
PubMed1995

Isolation of chromosome-specific genes by reciprocal probing of arrayed cDNA and cosmid libraries.

We have identified and mapped 61 novel and previously described chromosome 17 and X genes, using a human placental cDNA library. These genes were isolated using a gene identification and mapping strategy based on reciprocal probing of arrayed chromosome specific cosmid and cDNA libraries. This strategy scans gridded cosmids for nuclear genes and isolates the expressed sequence by a cosmid to cDNA filter hybridization. Inherent to this approach is the advantage of identifying the corresponding genomic cosmid clone of a particular cDNA. The genomic and cDNA reagents can be used for fluorescence in situ hybridization (FISH) and polymerase chain reaction (PCR) based mapping to resolve map positions of cDNAs belonging to gene families and those associated with multiple chromosomes. The downstream utility of reagents generated by the reciprocal probing methods is demonstrated in our studies.

Base Sequence↗
PubMed1995

[Experience in repair of eyelid ectropion with temporofrontal flap].

We used the temporofrontal flap to repair eyelid ectropion in 12 patients. The results were satisfactory. The indications, advantages and disadvantages, and the points for attention of this operation method were discussed. Experiences and lessons were summarized in this article.

Adult↗
PubMed1995

[Application of the local flap pedicled with a superficial vein in the repair of limb wounds].

Fourteen cases of limb wounds were repaired with the local flap pedicled with a superficial vein. All the flaps survived with satisfactory results. The superficial vein that speeds drainage from the flap can also provide blood supply to the flap, which is beneficial to the survival of the flap. The ratio of length to width of the flap is greater than that of the traditional flap. The creation of the flap is easy and the nearby artery is intact. The technique details are described in the article.

Adolescent↗
PubMed1994

Regulation of retinal ganglion cell axon arbor size by target availability: mechanisms of compression and expansion of the retinotectal projection.

The ability of pre- and postsynaptic populations to achieve the proper convergence ratios during development is especially critical in topographically mapped systems such as the retinotectal system. The ratio of retinal ganglion cells to their target cells in the optic tectum can be altered experimentally either by early partial tectal ablation, which results in an orderly compression of near-normal numbers of retinal projections into a smaller tectal area, or by early monocular enucleation, which results in the expansion of a reduced number of axons in a near-normal tectal volume. Our previous studies showed that changes in cell death and synaptic density consequent to these manipulations can account for only a minor component of this compensation for the population mismatch. In this study, we examine other mechanisms of population matching in the hamster retinotectal system. We used an in vitro horseradish peroxidase labeling method to trace individual retinal ganglion cell axons in superior colliculi partially ablated on the day of birth, as well as in colliculi contralateral to a monocular enucleation. We found that individual axon arbors within the partially lesioned tectum occupy a smaller area, with fewer branches and fewer terminal boutons, but preserve a normal bouton density. In contrast, ipsilaterally projecting axon arbors in monocularly enucleated animals occupy a greater area than in the normal condition, with a much larger arbor length and greater number of boutons and branches compared with normal ipsilaterally projecting cells. Alteration of axonal arborization of retinal ganglion cells is the main factor responsible for matching the retinal and tectal cell populations within the tectum. This process conserves normal electrophysiological function over a wide range of convergence ratios and may occur through strict selectivity of tectal cells for their normal number of inputs.

Animals↗
PubMed1994

[Application of the island skin flap to repair facial soft tissue defects].

We have applied the island skin flap for facial reconstruction and repair in 45 cases with very satisfactory results. The advantages of the island flap are: (1) having relatively long and flexible pedicle for transfer, (2) having good blood supply, (3) with well-matched color and texture and (4) avoiding the second operation. The characteristics and technical problems are discussed in the paper.

Adolescent↗
PubMed1993

Changes in synaptic density after developmental compression or expansion of retinal input to the superior colliculus.

The retinal projection to the superior colliculus can be made abnormally dense by inducing a "compressed" retinal projection into a subnormal tectal volume, or abnormally sparse by monocular enucleation early in development. Any or all of the features of cell number, axonal arbor, dendritic arbor, and synaptic density could potentially be adjusted to compensate for such variations in the convergence of one cell population on another. We have examined the consequences of neonatal partial tectal ablation or monocular enucleation for synaptic length, density, and relative numbers of synapse classes in the superficial gray layer of the hamster superior colliculus. Monocular enucleation resulted in a reduction of synaptic density in the superficial gray layer of the colliculus ipsilateral to the remaining eye. This decrease in density was entirely accounted for by a reduction of the number of synapses with round vesicles, large asymmetric terminal specializations, and pale mitochondria characteristic of retinocollicular terminals (RLP synapses). There was no compensatory increase in any other synaptic class. RLP synapses were larger in monocular enucleates. Partial tectal ablation had no effect on synaptic density, nor on the relative proportions of different synaptic types. Synapses of the RLP class were slightly smaller than normal. These results suggest that synaptic density is normally at a maximum that cannot be altered by increases in potential input. However, density may be reduced by decreasing the number of inputs. Terminal classes do not appear to compete with each other within the collicular volume, suggesting that postsynaptic cells controls both the classes and numbers of their potential inputs.

Animals↗
PubMedDate not supplied

Factors controlling the dendritic arborization of retinal ganglion cells.

The effects of changing retinal ganglion cell (RGC) density and availability of presynaptic sites on the development of RGC dendritic arbor in the developing chick retina were contrasted. Visual form deprivation was used to induce ocular enlargement and expanded retinal area resulting in a 20-30% decrease in RGC density. In these retinas, RGC dendritic arbors increased in a compensatory manner to maintain the inner nuclear layer to RGC convergence ratio in a way that is consistent with simple stretching; RGC dendritic arbors become larger with increased branch lengths, but without change in the total number of branches. In the second manipulation, partial optic nerve section was used to produce areas of RGC depletion of approximately 60% in the central retina. This reduction in density is comparable to the density of locations in the normal peripheral retina. In RGC depleted retinas, dendritic arbor areas of RGCs in the central retina grow to match the size of normal peripheral arbors. In contrast to the expanded case, two measures of intrinsic arbor structure are changed in RGC-depleted retinas; the branch density of RGC dendrites is greater, and the relative areas of the two arbors of bistratified cells are altered. We discuss the potential roles of retinal growth, local RGC density, and availability of presynaptic terminals in the developmental control of RGC dendritic arbor.

Animals↗