Search PubMed⌕ Search

Biomedical subjects

M Straume

Publications and source records attributed to M Straume.

50 records · Page 3Linked to original sources
PubMed1992

Role of sn-1-saturated,sn-2-polyunsaturated phospholipids in control of membrane receptor conformational equilibrium: effects of cholesterol and acyl chain unsaturation on the metarhodopsin I in equilibrium with metarhodopsin II equilibrium.

The effect of phospholipid bilayer acyl chain packing free volume on the equilibrium concentration of the form of photolyzed rhodopsin which initiates visual signal transduction, metarhodopsin II (meta II), is examined in reconstituted systems formed from the saturated phospholipid dimyristoylphosphatidylcholine (DMPC) and in the polyunsaturated phospholipid sn-1-palmitoyl-sn-2-arachidonoylphosphatidylcholine (PAPC) with and without 30 mol% cholesterol. The extent of meta II formation is determined from both flash photolysis measurements and rapidly acquired absorbance spectra. Equilibrium and dynamic properties of the lipid bilayer are characterized by the dynamic fluorescence properties of 1,6-diphenyl-1,3,5-hexatriene (DPH). DPH orientational properties are characterized by fv, a parameter which reflects the volume available for probe reorientation in the bilayer, relative to that available in an unhindered, isotropic environment [Straume, M., & Litman, B. J. (1987) Biochemistry 26, 5121-5126]. The metarhodopsin I in equilibrium with meta II equilibrium constant, Keq has a linear relationship with fv for rhodopsin in PAPC vesicles with and without cholesterol as well as for rhodopsin in DMPC vesicles, and these two correlation lines have different slopes. The correlations between Keq and fv in PAPC and DMPC systems are compared with a similar correlation in the native rod outer segment disk membrane and one reported previously in an egg phosphatidylcholine (egg PC) system [Mitchell, D. C., Straume, M., Miller, J. L., & Litman, B. J. (1990) Biochemistry 29, 9143-9149].(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗
PubMed1992

Two-dimensional differential scanning calorimetry: simultaneous resolution of intrinsic protein structural energetics and ligand binding interactions by global linkage analysis.

A general theoretical development for the design and analysis of two-dimensional thermal stability surfaces of proteins is presented. The surfaces are generated from multiple excess heat capacity profiles ( vs T) obtained at varying concentrations of an interacting ligand. The energetics of both the intrinsic protein stability and the protein-ligand interaction are simultaneously resolved by employing statistical thermodynamic models in global linkage analysis. This formalism allows resolution of the intrinsic protein folding-unfolding parameters (enthalpy, entropy, and heat capacity changes) as well as the ligand interaction parameters (binding stoichiometry, enthalpy, entropy, and heat capacity changes). The theory has been applied to the case of ribonuclease A and its interaction with cytidine-2'-monophosphate. The accuracy of the thermodynamic parameters obtained by this approach compares within error with those parameters that can be obtained by direct measurements.

Binding Sites↗
PubMed1990

Interconversion of metarhodopsins I and II: a branched photointermediate decay model.

Flash photolysis experiments designed to monitor the establishment of the metarhodopsin I to metarhodopsin II equilibrium are interpreted according to a branched model in which two spectrally indistinguishable but kinetically distinguishable forms of metarhodopsin II are postulated to exist in equilibrium with a common pool of metarhodopsin I. This interpretation arises from the consistent requirement for at least three exponentials for a valid description of the observed growth of absorbance at 380 nm following bleaching of bovine rhodopsin in rod outer segment disk membranes. Analysis of the 380-nm transient absorbance data permitted direct determination of the five physically interpretable individual rate constants of the model. This analysis represents a more explicit interpretation of kinetic data than that employed in earlier experiments of this kind, which involved estimating only apparent rates and apparent amplitudes of discrete multiexponential functions. The 380-nm absorbance contributions of all relevant species contributing to the observed dynamic absorbance change were accounted for simultaneously during nonlinear least-squares estimation of the model rate parameters. Analysis of deconvoluted equilibrium spectra acquired from samples identical with those used in the kinetics experiments confirmed the metarhodopsin I-metarhodopsin II equilibrium constants, Keq, derived from the dynamic analyses. It is shown that Keq varies from 1.28 at 10 degrees C to 7.3 at 37 degrees C and that approximately 90% of the metarhodopsin II present is in the form of metarhodopsin IIslow over the temperature range 10-37 degrees C. A physical interpretation of this decay model is discussed in the context of a distribution of metarhodopsin II structural and energetic states.

Cell Membrane↗
PubMed1990

Modulation of metarhodopsin formation by cholesterol-induced ordering of bilayer lipids.

The effect of lipid ordering on the kinetics and extent of metarhodopsin II (meta II) formation was evaluated in bovine rhodopsin which had been reconstituted into phosphatidylcholine vesicles containing 0, 15, and 30 mol% cholesterol. The rate of establishment of the dynamic equilibrium between metarhodopsin I (meta I) and the two kinetically distinguished forms of meta II in the branched meta II model [meta IIfast and meta IIslow; Straume, M., Mitchell, D. C., Miller, J. L., & Litman, B. J. (1990) Biochemistry (preceding paper in this issue)] is derived from kinetic measurements of rhodopsin photolysis in these vesicle systems at several temperatures. Values of the meta I in equilibrium with meta IItotal equilibrium constant, Keq, are calculated from the derived model-dependent rate constants, and are shown to be equivalent to those derived from rapidly acquired absorbance spectra. The presence of 30 mol% cholesterol reduces Keq by approximately 50% between 10 and 37 degrees C. Analysis of the model-dependent parameters in terms of delta H and delta S reveals that cholesterol raises the free energy of meta IIslow, relative to meta I, by increasing delta H whereas it raises the relative free energy of meta IIfast by making delta S meta IIfast relative to meta I less positive. The reduction in Keq by both temperature and cholesterol is found to be directly correlated with a parameter that reflects the free volume available for molecular motion in the hydrophobic core of the bilayer [Straume, M., & Litman, B. J. (1988) Biochemistry 27, 7723-7733].(ABSTRACT TRUNCATED AT 250 WORDS)

Cell Membrane↗
PubMed1989

Resolvability of free energy changes for oxygen binding and subunit association by human hemoglobin.

Probability distributions of the free energy changes for oxygen binding, subunit association, and quaternary enhancement by human hemoglobin were obtained from Monte Carlo simulations performed on two independent sets of variable protein concentration equilibrium oxygen-binding data. Uncertainties in unliganded and fully liganded dimer to tetramer association free energy changes (0 delta G'2 and 4 delta G'2) were accounted for in the simulations. Distributions of the dimer to tetramer association free energy changes for forming singly and triply liganded tetramers (1 delta G'2 and 3 delta G'2) are well defined and quite symmetric, whereas that for forming doubly liganded tetramers (2 delta G'2) is poorly defined and highly asymmetric. The distribution of the dimer stepwise oxygen-binding free-energy change (delta g'2i) is well defined and quite symmetric as are those of the tetramer stepwise oxygen-binding free-energy changes for binding the first and last oxygens to tetramers (delta g'41 and delta g'44). Distributions of the intermediate tetramer stepwise oxygen-binding free-energy changes (delta g'42 and delta g'43) are poorly defined and highly asymmetric, but are compensatory in that their sum (delta g'4[2 + 3]) is again well defined and nearly symmetric. Distributions of the free energy changes corresponding to the tetramer product Adair oxygen binding constants (delta G'4i) are well defined and quite symmetric for i = 1, 3, 4 but not for i = 2. The distribution of delta g'44 - delta g'2i (the quaternary enhancement free energy change) is relatively narrow, nearly symmetric, and confined to the negative free-energy domain. This suggests that the quaternary enhancement free energy change (a) may be resolved with good confidence from this data and (b) is finite and negative under the conditions of these experiments. Our results also suggest two different four-state combinatorial switch models that provide accurate characterization of hemoglobin's functional behavior.

Hemoglobins↗
PubMed1988

Equilibrium and dynamic bilayer structural properties of unsaturated acyl chain phosphatidylcholine-cholesterol-rhodopsin recombinant vesicles and rod outer segment disk membranes as determined from higher order analysis of fluorescence anisotropy decay.

Limited-frequency phase-modulation fluorometry of diphenylhexatriene (DPH) and trimethylammonium-diphenylhexatriene (TMA-DPH) was used to characterize the equilibrium and dynamic lipid structural properties of (1) reconstituted egg phosphatidylcholine (egg PC)-rhodopsin vesicles varying in rhodopsin content from 0 to approximately 1 mol %, (2) reconstituted PC-cholesterol-rhodopsin vesicles containing approximately 1 mol % rhodopsin and 0, approximately 15, or approximately 30 mol % cholesterol with egg PC, DOPC (di-18:1-PC), or PAPC (16:0,20:4-PC) as the phospholipid constituent, and (3) native bovine rod outer segment disk membranes. Experiments were conducted at 37, 25, 15, and 5 degrees C. Fluorescence lifetime analysis was performed by fitting the data to a constrained, discrete, biexponential model. Rotational depolarization properties were considered by a model requiring a single rotational diffusion coefficient and capable of producing orthogonal, bimodal orientational distributions for DPH and unimodal distributions for TMA-DPH [Straume, M., & Litman, B. J. (1987) Biochemistry 26, 5113-5120]. Unbleached rhodopsin reduced mean fluorophore lifetimes in proportion to the amount of protein present in PC vesicles as a result of probe-to-retinal energy transfer by (1) redistributing the relative lifetime contributions in favor of the short lifetime population and (2) reducing the lifetimes of each derived population. Lifetimes were increased by cholesterol and by reduction of the temperature, but the relative proportions of derived short- and long-lifetime populations were not affected. TMA-DPH lifetimes were more sensitive (in a relative manner) than were those of DPH. These observations are interpreted in terms of cholesterol and reduced temperature each inhibiting water penetrability into these bilayers, with a greater effect occurring in the headgroup and interfacial regions (probed by TMA-DPH) than in the hydrophobic bilayer interior (probed by DPH). Diunsaturated DOPC-rhodopsin recombinants were more resistant to temperature-dependent lifetime changes than were mixed-chain egg PC or PAPC vesicles. This suggests less favorable interaction of rhodopsin with diunsaturated PCs than with mixed-chain PCs. Lifetimes in disk membranes exhibited this same temperature dependence although DPH in disks had lifetimes longer than those seen in recombinant vesicles. TMA-DPH lifetimes in disks were more similar to those observed in cholesterol-containing recombinants. It would therefore appear that the large proportion of small, charged (at pH 7) phosphatidylethanolamine and phosphatidylserine headgroups present in disks reduces water penetrability into the d

Animals↗
PubMed1988

Three-state combinatorial switch models as applied to the binding of oxygen by human hemoglobin.

We have generated a series of all 6561 unique, discrete three-state combinatorial switch models to describe the partitioning of the cooperative oxygen-binding free change among the 10 variously ligated forms of human hemoglobin tetramers. These models were inspired by the experimental observation of Smith and Ackers that the cooperative free energy of the intersubunit contact regions of the 10 possible ligated forms of human hemoglobin tetramers can be represented by a particular distribution of three distinct energy levels [Smith, F. R., & Ackers, G. K. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 5347-5351]. A statistical thermodynamic formulation accounting for both dimer-tetramer equilibria and ligand binding properties of hemoglobin solutions as a function of oxygen and protein concentrations was utilized to exhaustively test these thermodynamic models. In this series of models each of the 10 ligated forms of the hemoglobin tetramer can exist in one, and only one, of three possible energy levels; i.e., each ligated form was assumed to be associated with a discrete energy state. This series of models includes all possible ways that the 10 ligation states of hemoglobin can be distributed into three distinct cooperative energy levels. The mathematical models, as presented here, do not permit equilibria between energy states to exist for any of the 10 unique ligated forms of hemoglobin tetramers. These models were analyzed by nonlinear least-squares estimation of the free energy parameters characteristic of this statistical thermodynamic development.(ABSTRACT TRUNCATED AT 250 WORDS)

Hemoglobins↗
PubMed1987

Equilibrium and dynamic structure of large, unilamellar, unsaturated acyl chain phosphatidylcholine vesicles. Higher order analysis of 1,6-diphenyl-1,3,5-hexatriene and 1-[4-(trimethylammonio)phenyl]- 6-phenyl-1,3,5-hexatriene anisotropy decay.

Equilibrium and dynamic structural properties of minimally to highly unsaturated acyl chain, large, unilamellar phosphatidylcholine (PC) vesicles have been characterized by the dynamic fluorescence properties of 1,6-diphenyl-1,3,5-hexatriene (DPH) and 1-[4-(trimethylammonio)phenyl]-6-phenyl-1,3,5-hexatriene (TMA-DPH). Fluorescence lifetimes and equilibrium and dynamic rotational properties of these probes were analyzed by limited-frequency phase-modulation fluorometry in egg PC, palmitoyloleoyl-PC (POPC), dioleoyl-PC (DOPC), palmitoylarachidonoyl-PC (PAPC), and palmitoyldocosahexaenoyl-PC (P-22:6-PC) vesicles over a temperature range from 5 to 37 degrees C. DPH equilibrium orientational distributions were derived according to a model permitting bimodal orientational distributions in which the parallel probability maximum was aligned parallel to the bilayer normal and the orthogonal probability maximum was oriented parallel to the plane of the bilayer. TMA-DPH orientational distributions were derived according to the same model except that all probability was constrained to the parallel orientation. TMA-DPH fluorescence lifetimes were much more sensitive than those of DPH to variations in acyl chain composition and temperature although the same qualitative behavior was generally observed with both probes. Greater acyl chain unsaturation and higher sample temperatures each gave rise to shorter lifetimes consistent with increased water penetrability into the bilayers. Equilibrium order of the hydrocarbon core (as probed by DPH) and of the interfacial and head group regions of the bilayers (as probed by TMA-DPH) was reduced by increasing levels of unsaturation and by higher sample temperatures.(ABSTRACT TRUNCATED AT 250 WORDS)

Diphenylhexatriene↗
PubMed1987

Influence of cholesterol on equilibrium and dynamic bilayer structure of unsaturated acyl chain phosphatidylcholine vesicles as determined from higher order analysis of fluorescence anisotropy decay.

The influence of cholesterol on equilibrium and dynamic bilayer structure in minimally to highly unsaturated phosphatidylcholine (PC) vesicles has been examined by characterization of the dynamic fluorescence properties of 1,6-diphenyl-1,3,5-hexatriene (DPH) and 1-[4-(trimethylammonio)phenyl]-6-phenyl-1,3,5-hexatriene (TMA-DPH). Large, unilamellar egg PC, palmitoyloleoyl-PC (POPC), dioleoyl-PC (DOPC), palmitoylarachidonoyl-PC (PAPC), and palmitoyldocosahexaenoyl-PC (P-22:6-PC) vesicles containing no cholesterol or approximately 15 or 30 mol % cholesterol have been examined. Equilibrium and dynamic DPH orientational properties were analyzed according to an orthogonal, bimodal orientational distribution function [Straume, M., & Litman, B.J. (1987) Biochemistry (preceding paper in this issue)]. The same mathematical formalism was applied to TMA-DPH except that probe orientational probability was permitted only in the distribution peak aligned parallel to the bilayer normal. TMA-DPH fluorescence lifetimes were consistently increased by incorporation of cholesterol into these vesicles. Greater acyl chain unsaturation and increasing temperature each promoted reduction of lifetimes in the presence or absence of cholesterol. DPH lifetimes were much less sensitive than those of TMA-DPH to changes in composition or temperature. This behavior is consistent with reduced water penetrability into liquid-crystalline bilayers as cholesterol content is increased and as acyl chain unsaturation and temperature are reduced. Cholesterol also induces substantial equilibrium ordering of the bilayer both at the hydrophobic core and at the bilayer-water interface. DPH orientational distributions were shifted in favor of alignment parallel to the acyl side chains. The distributions of both probes were narrowed in response to incorporation of cholesterol.(ABSTRACT TRUNCATED AT 250 WORDS)

Cholesterol↗
PubMedDate not supplied

The use of regularity as estimated by approximate entropy to distinguish saltatory growth.

A nonlinear dynamics metric, approximate entropy (ApEn), is investigated as a diagnostic method for distinguishing between mathematical models, and the underlying mechanistic hypotheses that purport to describe the same time series experimental observations. ApEn measures the occurrence of pattern regularity within a time series, and is used here to investigate growth patterns in daily length growth. The notion investigated is that ApEn distributions for competing time series patterns expressed as mathematical formulations can be modelled by Monte Carlo and bootstrap methods and compared to the ApEn values for an original experimental data series. If the ApEn values for the different models do not overlap, then it is expected that ApEn can be utilized to distinguish these models and hypotheses, and to provide statistical assessment for the underlying biological patterns in experimental data. The conclusion is that the ApEn metric is successful as a time series diagnostic tool. It is a model-independent statistic that clearly differentiates saltatory growth from slowly varying continuous models of growth and serves to further document the saltatory nature of growth. This is a unique application of approximate entropy, illustrating the broad applicability of ApEn to biological time series, with the specific example of discriminating a saltatory growth process in longitudinal growth data. Future investigations of regularity in longitudinal time series in human biology with ApEn statistics are suggested.

Data Interpretation, Statistical↗