Search PubMed⌕ Search

Biomedical subjects

M F Schmid

Publications and source records attributed to M F Schmid.

41 records · Page 3Linked to original sources

Preliminary three-dimensional model for nematode thick filament core.

Understanding the structure and the mechanism of assembly of thick filaments have been long-standing problems in the field of muscle biology. Cores which represent the backbones of thick filaments and consist of paramyosin and associated proteins were isolated from the nematode Caenorhabditis elegans. Electron microscopy of negatively stained and frozen hydrated cores was performed. The resulting images were analyzed by computing their Fourier transforms, three-dimensional reconstruction, and by modeling. A preliminary three-dimensional model is proposed in which the paramyosin constitutes an outer sheath of seven subfilaments about a set of inner 54-nm-long tubules which repeat every 72 nm. The subfilaments are not closely packed but require cross-linking by the internal tubules. Each subfilament consists of two strands of paramyosin molecules which are staggered by 72 nm with respect to one another. This stagger introduces a 22-nm gap between consecutive paramyosin molecules in each strand. An offset of the center of the inner tubules relative to the center of the gap of 6 nm was consistent with the images and their transforms. This model suggests that the nonhelical ends of paramyosin and the unpaired gap between adjacent paramyosin molecules contain sites for the interaction with the inner tubular proteins. The molecular interactions at this locus would appear to be critical in the assembly of thick filaments and their regulation.

Amino Acid Sequence↗

A 7-A projection map of frozen, hydrated acrosomal bundle from Limulus sperm.

The acrosomal bundle from Limulus sperm has been imaged to 7 A in a 400-kV electron cryomicroscope using the spot-scan technique. These images have been processed by Fourier averaging, corrected for the contrast transfer function, and merged to that resolution. The reconstructed density map of this projection shows features consistent with the 13-A projection map from a helical reconstruction and with the X-ray-derived model for F-actin, and regions of possible scruin-scruin contacts.

Acrosome↗

A brief description of I.C.E.: the integrated crystallographic environment.

We describe the current status of the program I.C.E., the Integrated Crystallographic Environment. I.C.E. is a windows-based, menu-driven image processing package mainly aimed toward crystallographic image processing, although some of its functions have been used in analyzing single particle data and helical objects. The system can take individual images of crystals through the entire process of data analysis, from windowing the raw image through to the final evaluation of defocus, symmetry and creation of projection reconstructions. Current plans are to incorporate a three-dimensional database of images and electron diffraction patterns, and 3-D merging and visualization.

Computer Simulation↗

Adopting a database as a solution to managing electron image data.

A database was used for data management and interprogram communication in an image processing and three-dimensional reconstruction program suite for biological bundles. The programs were modified from the MRC crystallographic package. The database server works with local and remote programs and data sets, allows simultaneous requests from multiple clients, and maintains multiple databases and data tables within them. It has built-in security for the data access. Several graphical user interfaces are available to view and/or edit data tables. In addition, FORTRAN interface and function libraries are written to communicate with image processing software. The data management overhead is inexpensive, requiring only narrow bandwidth from the network. It easily handles several data tables with over 1000 entries.

Computer Communication Networks↗

Effects of radiation damage with 400-kV electrons on frozen, hydrated actin bundles.

Electron images can be used to provide amplitudes and phases for the structural determination of biological specimens. Radiation damage limits the amount of structural information retrievable by computer processing. A 400-kV electron microscope was used to investigate radiation damage effects on frozen, hydrated actin bundles kept at -168 degrees C. The quality of phases within and among images in a damage series was evaluated quantitatively out to 16 A resolution. It was found that the phases of structure factors with good signal-to-noise ratio (IQ less than or equal to 4) can be reliably retrieved from images taken at a cumulative dose of at least 25 electrons/A2.

Actins↗