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Biomedical subjects

M E Burkard

Publications and source records attributed to M E Burkard.

20 records · Page 2Linked to original sources

The oxygen window and decompression bubbles: estimates and significance.

The "oxygen window" causes a partial pressure difference of inert gas between the inside and outside of decompression bubbles. Estimates of Po2 and Pco2 in tissue are necessary for O2 window calculations and any calculations about growth or decay of decompression sickness bubbles, but the estimates involve many uncertainties. Using simplifying assumptions, we estimated the O2 window over a broad range of environments for tissues having a wide range of O2 extractions. The results were as follows: a) the window increases with ambient pressure, but levels off at very high pressure; b) the window is only 1 or 2 kPa for air breathing at extreme altitudes, and 200 kPa or more in hyperbaric environments; c) when O2 is breathed instead of air, the window is as much as 50 times larger at altitude but only about 10 times larger in hyperbaric environments; d) changes in bubble size due to the window decrease as barometric pressure increases; and e) there are seven additional factors which may supplement or oppose the action of the oxygen window.

Altitude↗

The energetics of small internal loops in RNA.

The energetics of small internal loops are important for prediction of RNA secondary and tertiary structure, selection of drug target sites, and understanding RNA structure-function relationships. Hydrogen bonding, base stacking, electrostatic interactions, backbone distortion, and base-pair size compatibility all contribute to the energetics of small internal loops. Thus, the sequence dependence of these energetics are idiosyncratic. Current approximations for predicting the free energies of internal loops consider size, asymmetry, closing base pairs, and the potential to form GA, GG, or UU pairs. The database of known three-dimensional structures allows for comparison with the models used for predicting stability from sequence.

Base Pairing↗