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Biomedical subjects

M B Mathews

Publications and source records attributed to M B Mathews.

At least 127 records · Page 7Linked to original sources

Analysis of expression of adenovirus DNA (fragments) by microinjection in Xenopus oocytes. Independent synthesis of minor early region 2 proteins.

Injection of whole adenovirus DNA into Xenopus oocytes results in the synthesis of large amounts of the early region 2A DNA-binding protein (E2A-DBP) and smaller amounts of polypeptide IX. The lack of synthesis of any functional messenger RNAs transcribed from the major late promotor at 16.3 map units is remarkable. Cleavage of the adenovirus DNA outside the E2A gene proper by restriction enzymes decreases synthesis of the DBP to about 10% of the amount produced after injection of intact DNA. On the other hand, presence of the terminal (Bellett) protein on the injected template enhances DBP synthesis considerably. Experiments with injected DNA restriction fragments, as well as reconstructed genes cloned into pBR322, indicate that efficient synthesis of DBP in oocytes requires the presence of either or both of the two main promoters from which the E2A gene is transcribed plus an intact 3' end of the gene. In the absence of any known promotor, 100-fold lower amounts of otherwise normal DBP are produced. Unlike in a regular infection, synthesis of DBP in oocytes does not require the product of the E1A gene. The same series of experiments also demonstrates that the DBP, a phosphoprotein, is the substrate of a cellular rather than a virus-encoded protein kinase. Two minor E2A proteins, although colinear with the major DBP, are synthesized independently. Synthesis of a 44,000 Mr protein, probably corresponding to the carboxy-terminal 360 amino acid residues of the DBP, is not decreased after injection of "promotorless" E2A genes. Unlike the 44,000 Mr protein, production of a 67,000 Mr protein (carboxy-terminal 483 amino acid residues) by one DNA-construct is probably directed by a T-A-T-A-A-A-T-A sequence in the vector DNA.

Adenoviruses, Human↗

Morphologic alteration of cultured arterial smooth muscle cells by cyclic stretching.

Cyclic stretching of smooth muscle cells in culture resulted in a two- to fivefold increase in protein and collagen synthesis. The same in vitro system was utilized to relate changes in smooth muscle cell morphology to mechanical stress. Smooth muscle cells, grown in culture from rabbit aorta explants, were transferred to purified elastic membranes derived from bovine aorta. The membranes were either subjected to stretching and relaxation 52 times per minute or stretched and held stationary for 8, 48, or 56 hr. Profiles of rough endoplasmic reticulum (RER) were counted and myofilament content estimated from electron micrographs of 100 cells for each experiment. Cells from cyclically stretched preparations were compared with stationary cells derived from the same subculture. Myofilaments were largely replaced by RER in cyclically stretched cells and there was a reciprocal relationship between RER and myofilament content in individual cells. In cells from stationary preparations, myofilament content also diminished with time but RER profiles were few. At 56 hr, RER profiles numbered 16.7 +/- 1.7 in stretched cells compared with 3.6 +/- 1.3 in stationary cells (P less than 0.05). Cyclically stretched cells formed numerous intercellular contacts and showed little evidence of cytoplasmic degradation while stationary cells showed few contacts and contained numerous cytosomes and lamellar bodies. The results suggest that cyclic stretching resulted in the formation of RER or the preservation of myofilaments and that immobility resulted in the disappearance of myofilaments and cytoplasmic degradation.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

Purification of an adenovirus-coded DNA polymerase that is required for initiation of DNA replication.

Temperature-sensitive mutants in the N complementation group of human adenovirus type 5 are defective at the nonpermissive temperature for replication of virus DNA and for transformation of rat embryo cells. We show that nuclear extracts prepared from Ad5ts 149-infected cells grown at the nonpermissive temperature fail to replicate DNA in vitro. The defect lies in the first step in the initiation of viral DNA synthesis, the formation of a covalent linkage between the terminal protein precursor (pTP) and dCMP. A 140 kilodalton (140 kd) protein which complements these defective extracts and contains DNA polymerase activity has been purified from HeLa cells infected with wild-type Ad2. It is tightly associated with the 80 kd pTP in a replication complex. Both of these proteins are products of the E2B region of the adenovirus genome, and the 140 kd protein coding sequences lie immediately downstream from those encoding the 80 kd protein. These results demonstrate that adenovirus encodes a novel DNA polymerase that is required for priming of DNA synthesis at the origin of replication. This protein may also function in the initiation of transformation of cultured cells.

Adenoviruses, Human↗

Interaction between VA RNA and the lupus antigen La: formation of a ribonucleoprotein particle in vitro.

The small adenovirus-encoded VA RNAs occur as ribonucleoprotein (RNP) particles in association with a cellular protein antigen, La, recognized by the anti-La class of lupus sera [Lerner, M. R., Boyle, J. A., Hardin, J. A. & Steitz, J. A. (1981) Science 211, 400-402]. We have tentatively identified the La antigen as a HeLa cell phosphoprotein of Mr approximately equal to 45,000, present in infected and uninfected cells. The antigen appears not to be required for the transcription of VA RNAs in vitro. RNP particles that contain newly synthesized VA RNAs assemble rapidly in transcription extracts making VA RNA and also can be reconstituted from purified VA RNA and a source of La antigen. Variant forms of VA RNAI with sequence deletions and substitutions bind to the La antigen, suggesting that the recognition site includes the RNA termini or the sequences corresponding to the internal control region (promoter), or both. Upon reconstitution with fragments of VA RNAI, oligonucleotides from both the 5' and 3' termini bind to the antigen, but those from the control region do not. The terminal oligonucleotides of wild-type VA RNA can form a basepaired stem, but structures of comparable stability cannot be formed by the chimeric variant molecules. Therefore, the recognition site is probably the terminal nucleotides themselves rather than the stem structure.

Adenoviruses, Human↗

A comparison of in vitro cellular responses to mechanical and electrical stimulation.

In the last several decades, enormous interest has been generated toward understanding the cell as it is controlled by its external physical environment. The purpose of this study was to determine the effects of well-defined applied mechanical stress and time-varying electric fields on the cellular synthesis of connective tissue macromolecules. Chondrocytes harvested by trypsin digestion of 15-day-old chick embryo sternae were randomly dispersed and cultured on elastin membranes in a humidified atmosphere with 10 per cent CO2 and 90 per cent air. Following five days of growth in F12 media and 5 per cent fetal calf serum, the membranes underwent either 1) a 10 per cent cyclic mechanical stretch or 2) 60 Hz A.C. electrical stimulation with current densities of 1 to 1,000 nA/mm2 or 3) control without stimulation, each for an eight-hour period. C14-hydroxyproline incorporation into collagen, and H2 35 SO4 incorporation into glycosaminoglycans (GAGs) were measured by liquid scintillation techniques. Scanning and transmission electron microscopy analysis of control and stimulated cells demonstrated discernable differences. Both mechanically and electrically stimulated chondrocytes showed a two- to three-fold increase in GAG synthesis and a general depression in protein and collagen synthesis over controls. The general similarity in response to both mechanical and electrical stress suggests common processes by which they modulate cellular synthesis of cartilage connective tissue proteins.

Animals↗

Identification of the gene and mRNA for the adenovirus terminal protein precursor.

The precursor of the 55K adenovirus terminal protein is an 87K protein that is covalently linked to viral DNA. This protein is likely to be identical to the 80,000 dalton protein described by Challberg et al. (1980). The mRNA for the 87K terminal protein precursor, like that for the E2-72K DNA binding protein, is detectable at both early and late times of infection, and its production is sensitive to protein synthesis inhibition (Lewis and Mathews, 1980). The 87K protein, together with proteins of 105,000 and 75,000 daltons, are translated from leftward transcribed (1-strand) messenger RNAs that are complementary to the viral genome between positions 11.2 and 31.5. Additional hybridization to the region between coordinates 37.3 and 41 suggests that the RNA body is spliced to sequences mapping farther right in the genome. Electron microscopic heteroduplex analysis has revealed a family of 1-strand RNAs that probably encode these proteins. The RNA bodies extend from coordinated 30, 26 and 23 to 11.1, with leaders at 39, 68.5 and 75 map units, defining a new adenovirus early region. These RNAs and region E2 RNAs share the first leader and presumably the same promoter, and may be coordinately expressed. Virions of the protease-deficient adenovirus 2 mutant ts1 grown at the restrictive temperature contain only the 87K form; when grown at the permissive temperature they contain both the 87K and 55K forms, and an additional 62K form; wild-type virions contain only the 55K form. Peptide analysis shows all these proteins to be related. The DNA-protein complex containing the 87K form is active as a template for viral DNA replication in vitro. This data supports a model of adenovirus DNA replication in which the 87K terminal protein precursor is the primary translation product and primes DNA synthesis. The 87K precursor is processed curing virus maturation to the 55K terminal protein, possibly via a 62K intermediate form, by the virus-specified Ad2ts1 protease.

Adenoviruses, Human↗

Virus-associated RNAs of naturally occurring strains and variants of group C adenoviruses.

We compared the sequences of the virus-associated (VA) RNAs of group C adenoviruses, serotypes 1, 2, 5, and 6, and of three variants of adenovirus type 2 (Ad2) selected for loss of the BamHI restriction site in the VA RNAI gene. In the naturally occurring strains. VA RNAI exists in two forms which differ by two nucleotides: one form is found in Ad2 and Ad6, and the other is found in Ad1 and Ad5. There are three sites of variation in Va RNAII, the Ad1, Ad2, and Ad5 forms each differing from Ad6 VA RNAII at one of the positions. One of the selected variants has a four-base duplication within the BamHI cleavage site, whereas the two others have acquired a VA RNAI sequence indistinguishable from that of Ad5. The findings are interpreted in terms of the secondary structures of the VA RNAs and the interrelationships among the viruses.

Adenoviruses, Human↗

Binding of adenovirus VA RNA to mRNA: a possible role in splicing?

Most, though not all, of the messenger RNAs of higher cells are composed of transcripts from two or more non-contiguous DNA segments that are 'spliced' together by mechanisms which are poorly understood. There has been recent speculation that small RNA molecules may play a part in the splicing reaction, acting as templates or adaptors to stabilize the appropriate conformation of a precursor RNA. Adenovirus-2 codes for two low molecular weight RNAs, the virus-associate (VA) RNAs I and II, major and minor species, respectively. These RNAs are about 160 nucleotides long and have both been sequenced. They originate from closely spaced genes which are transcribed by RNA polymerase III, but have not been definitively associated with any function. We have shown previously that a fraction of the VA RNA of infected cells is complexed with high molecular weight RNA in a denaturation-sensitive fashion. Results presented here show that the VA RNAs bind to unfractionated late virus mRNA and to a cloned copy of a single mRNA species, but not to corresponding cloned segments of viral genomic DNA. It is suggested that VA RNA may act as a template in the splicing reaction.

Adenoviruses, Human↗

Control of adenovirus early gene expression: a class of immediate early products.

We have identified the viral mRNAs present in cells in which protein synthesis has been stringently inhibited prior to infection with adenovirus type 2. These species presumably represent the subset of viral mRNAs that are "immediate early" products, requiring only host cell genes of their expression, and they do not include any of the conventionally recognized early mRNAs. Treatment of cells with 100 microM anisomycin inhibits 99.6% of protein synthesis and substantially depresses (by 20--200 fold) the levels of the conventional early mRNAs from regions E1A, E1B, E2, E3 and E4. Also depressed are species encoding an 87K protein (11.6--31.5 map units) and a 13.6K protein (encoded a short distance to the right of 21.5 map units). The only mRNAs not depressed by this treatment are an mRNA for a 13.5K protein encoded between 17.0 and 21.5 map units, and the mRNA for the late 52,55K protein encoded between 29 and 34 map units, which is also present in small amounts at early times. Further proof that production of the mRNA for the immediate early 13.5K protein is independent of E1A gene function is provided by the observation that it can be detected in cells infected with the E1A deletion mutant dl312.

Adenoviruses, Human↗

DNA replication and the early to late transition in adenovirus infection.

Expression of the late genes of adenovirus is only detectable after virus DNA synthesis has occurred. Using a superinfection protocol, we show that replication of the template per se is required for expression of late regions L2--L5 (mapping to the right of position 39) and that the accumulation of early gene products does not suffice. This regulation is probably exerted at the level of transcription rather than by control of processing or selective stabilization of late mRNA or its precursors. The promoter-proximal late gene block L1, however, appears to be subject to processing control. At early times a single member of this gene family (tripartite leader plus coordinates 29--39, encoding the 52,55K polypeptide pair) is expressed, whereas at late times an additional, differently spliced mRNA species is generated from this region (tripartite leader plus coordinates 34--39, encoding polypeptide IIIa).

Adenoviruses, Human↗

The gene for polypeptide IX of adenovirus type 2 and its unspliced messenger RNA.

A 606 base pair segment of adenovirus type 2 DNA which includes the gene for polypeptide IX and its flanking regions has been sequenced. Comparison with the sequence of a cDNA copy of the 9S mRNA for polypeptide IX and direct analysis of its capped oligonucleotide show that the gene and its mRNA are colinear. The 9S mRNA has a length of 485 nucleotides, excluding the poly(A) tract and the m7G of the cap, and contains one single open translational reading frame which is sufficiently long to encode polypeptide IX. This reading frame contains three AUG codons, the first of which is used for initiation of protein synthesis. The mRNA has a 5' noncoding region of 24 nucleotides, excluding the m5G of the cap, and encodes a polypeptide which is 139 amino acids long and unusually rich in serine and alanine. The sequence TATATAA is found 25 nucleotides upstream from the cap site. The polyadenylation site has been identified but cannot be located unambiguously because of the presence of two A residues in the DNA sequence at this position. The 3' noncoding region is 41--43 nucleotides long and contains the hexanucleotide sequence AAUAAA. The mRNA for polypeptide IVa2 is encoded adjacent to that for polypeptide IX and is transcribed in the opposite direction. Sequence analysis revealed an overlap of 11--16 nucleotides, depending on the precise location of the polyadenylation sites, between 3' ends of these mRNAs.

Adenoviruses, Human↗

Structure of genes for virus-associated RNAI and RNAII of adenovirus type 2.

A DNA sequence, 552 base pairs in length, encoding the two "virus-associated" (VA) RNAs of adenovirus type 2 is presented. Comparison of the oligonucleotide maps of VA RNAI and VA RNII with the established sequence permits identification of the genes for these RNAs. VA RNAI is 157-160 nucleotides long and VA RNAII 158-163 nucleotides long, depending on the exact length of their heterogeneous 3' end. The genes are separated by a spacer of about 98 nucleotides. The RNAs exhibit scattered regions of primary sequence homology and can adopt secondary structures which resemble each other closely in their configuration and stability. VA RNAII is also capable of assuming a different configuration that is energetically more favorable. The data suggest that the two RNA genes may have arisen by duplication of an ancestral gene and that the folding of the RNA chain may be of importance for the function of VA RNAs. Hypothetical RNA polymerase III recognition sequences and the coding potential of the region are discussed.

Adenoviruses, Human↗