Biomedical subjects

Luc Bissonnette

Publications and source records attributed to Luc Bissonnette.

6 recordsLinked to original sources

PubMed2006

Information content of data measured with a multiple-field-of-view lidar.

Lidars with multiple fields of view (MFOVs) are promising tools for gaining information on cloud particle size. We perform a study of the information content of MFOV lidar data with the use of eigenvalue analysis. The approach we have developed permits an understanding of the main features of MFOV lidars and provides a way to relate the accuracy of particle size estimation with the measurement uncertainty and the scattering geometry such as the cloud-base height and the lidar sounding depth. Second-order scattering computations are performed for an extended range of particle sizes and for a wide range of lidar fields of view (FOVs). The results obtained allow us to specify the areas of possible applications of these lidars in cloud studies. Comparison of results obtained with polarized and cross-polarized scattered components demonstrate that the cross-polarized signal should provide a more stable retrieval and is preferable when double scattering is highly dominant. Our analysis allows for the estimation of the optimal number of FOVs in the system and their angular distribution, so this work can be a useful tool for practical MFOV lidar design.

Journal Article↗

PubMed2006

Simple relation between lidar multiple scattering and depolarization for water clouds.

An empirical relationship is derived between the multiple-scattering fraction and the linear depolarization ratio by using Monte Carlo simulations of water clouds measured by backscatter lidar. This relationship is shown to hold for clouds having a wide range of extinction coefficients, mean droplet sizes, and droplet size distribution widths. The relationship is also shown to persist for various instrument fields of view and for measurements made within broken cloud fields. The results obtained from the Monte Carlo simulations are verified by using multiple-field-of-view lidar measurements. For space-based lidars equipped to measure linear depolarization ratios, this new relationship can be used to accurately assess signal perturbations due to multiple scattering within nonprecipitating water clouds.

Journal Article↗

PubMed2006

Next revolution in the molecular theranostics of infectious diseases: microfabricated systems for personalized medicine.

The molecular diagnosis of infectious diseases is currently going through a revolution sustained by the regulatory approval of amplification tests that have been shown to be equivalent or superior to existing gold standard methods. The recent approval of a microarray system for the pharmacogenomic profiling of cytochrome P450-mediated drug metabolism is paving the way to novel, rapid, sensitive, robust and economical microfabricated systems for point-of-care diagnostics, which are utilized closer and closer to the patient's bedside. These systems will enable the multiparametric genetic evaluation of several medical conditions, including infectious diseases. This forecoming revolution will position molecular theranostics in a broader integrated view of personalized medicine, which exploits genetic information from microbes and human hosts to optimize patient management and disease treatment.

Communicable Diseases↗

PubMed2005

Microfluidic device for rapid (<15 min) automated microarray hybridization.

BACKGROUND: Current hybridization protocols on microarrays are slow and need skilled personnel. Microfluidics is an emerging science that enables the processing of minute volumes of liquids to perform chemical, biochemical, or enzymatic analyzes. The merging of microfluidics and microarray technologies constitutes an elegant solution that will automate and speed up microarray hybridization. METHODS: We developed a microfluidic flow cell consisting of a network of chambers and channels molded into a polydimethylsiloxane substrate. The substrate was aligned and reversibly bound to the microarray printed on a standard glass slide to form a functional microfluidic unit. The microfluidic units were placed on an engraved, disc-shaped support fixed on a rotational device. Centrifugal forces drove the sample and buffers directly onto the microarray surface. RESULTS: This microfluidic system increased the hybridization signal by approximately 10fold compared with a passive system that made use of 10 times more sample. By means of a 15-min automated hybridization process, performed at room temperature, we demonstrated the discrimination of 4 clinically relevant Staphylococcus species that differ by as little as a single-nucleotide polymorphism. This process included hybridization, washing, rinsing, and drying steps and did not require any purification of target nucleic acids. This platform was sensitive enough to detect 10 PCR-amplified bacterial genomes. CONCLUSION: This removable microfluidic system for performing microarray hybridization on glass slides is promising for molecular diagnostics and gene profiling.

DNA↗

PubMed2005

Detection of target DNA using fluorescent cationic polymer and peptide nucleic acid probes on solid support.

BACKGROUND: Nucleic acids detection using microarrays requires labelling of target nucleic acids with fluorophores or other reporter molecules prior to hybridization. RESULTS: Using surface-bound peptide nucleic acids (PNA) probes and soluble fluorescent cationic polythiophenes, we show a simple and sensitive electrostatic approach to detect and identify unlabelled target nucleic acid on microarray. CONCLUSION: This simple methodology opens exciting possibilities for applied genetic analysis for the diagnosis of infections, identification of genetic mutations, and forensic inquiries. This electrostatic strategy could also be used with other nucleic acid detection methods such as electrochemistry, silver staining, metallization, quantum dots, or electrochemical dyes.

Base Sequence↗

PubMed2005

Correlation between microarray DNA hybridization efficiency and the position of short capture probe on the target nucleic acid.

The hybridization behavior of small oligonucleotides arrayed on glass slides is currently unpredictable. In order to examine the hybridization efficiency of capture probes along target nucleic acid, 20-mer oligonucleotide probes were designed to hybridize at different distances from the 5' end of two overlapping 402- and 432-bp ermB products amplified from the target DNA. These probes were immobilized via their 5' end onto glass slides and hybridized with the two labeled products. Evaluation of the hybridization signal for each probe revealed an inverse correlation with the length of the 5' overhanging end of the captured strand and the hybridization signal intensity. Further experiments demonstrated that this phenomenon is dependent on the reassociation kinetics of the free overhanging tail of the captured DNA strand with its complementary strand. This study delineates key predictable parameters that govern the hybridization efficiency of short capture probes arrayed on glass slides. This should be most useful for designing arrays for detection of PCR products and nucleotide polymorphisms.

Benchmarking↗