Biomedical subjects

Laurent Maron

Publications and source records attributed to Laurent Maron.

17 recordsLinked to original sources

PubMed2006

U(SMes)n, (n = 3, 4) and Ln(SMes)3 (Ln = La, Ce, Pr, Nd): lanthanide(III)/actinide(III) differentiation in agostic interactions and an unprecedented eta3 ligation mode of the arylthiolate ligand, from X-ray diffraction and DFT analysis.

Reaction of U(NEt(2))(4) with HS-2,4,6-(t)Bu(3)C(6)H(2) (HSMes) gave U(SMes)(3)(NEt(2))(py) (1), whereas similar treatment of U[N(SiMe(3))SiMe(2)CH(2)][N(SiMe(3))(2)](2) afforded U(SMes)[N(SiMe(3))(2)](3) (2) and U(SMes)(3)[N(SiMe(3))(2)]. The first neutral homoleptic uranium(IV) thiolate to have been crystallographically characterized, U(SMes)(4) (4), was isolated from the reaction of U(BH(4))(4) and KSMes. The first homoleptic thiolate complex of uranium(III), U(SMes)(3) (5), was synthesized by protonolysis of U[N(SiMe(3))(2)](3) with HSMes in cyclohexane. The crystal structure of 5 exhibits the novel eta(3) ligation mode for the arylthiolate ligand. Comparison of the crystal structure of 5 with those of the isomorphous lanthanide congeners Ln(SMes)(3) (Ln = La, Ce, Pr, and Nd) indicates that the U-S, U-C(ipso)(), and U-C(ortho)() bond lengths are shorter than the corresponding ones in the 4f-element analogues, when taking into account the variation in the ionic radii of the metals. The distance between the uranium and the carbon atoms involved in the U...H-C epsilon agostic interaction of each thiolate ligand is shorter, by approximately 0.05 A, than that expected from a purely ionic bonding model. The lanthanide(III)/actinide(III) differentiation was analyzed by density functional theory (DFT). The nature of the M-S bond is shown to be ionic strongly polarized at the sulfur for M = U and iono-covalent (i.e. strongly ionic with low orbital interaction), for M = Ln. The strength of the U...H-C epsilon agostic interaction is proposed to be controlled by the maximization of the interaction between U(+) and S(-) under steric constraints. The eta(3) ligation mode of the arylthiolate ligand is also obtained from DFT.

Journal Article↗

PubMed2006

Nanocrystalline lanthanide nitride materials synthesised by thermal treatment of amido and ammine metallocenes: X-ray studies and DFT calculations.

The decomposition process of ammine lanthanide metallocenes was studied by X-ray diffractometry, spectroscopy and theoretical investigations. A series of ammine-tris(eta(5)-cyclopentadienyl)lanthanide(III) complexes 1-Ln (Lanthanide (Ln)=Sm, Gd, Dy, Ho, Er, Yb) was synthesised by the reaction of [Cp(3)Ln] complexes (Cp=cyclopentadienyl) with liquid ammonia at -78 degrees C and structurally characterised by X-ray diffraction methods, mass spectrometry and vibrational (IR, Raman) spectroscopy. Furthermore, amido-bis(eta(5)-cyclopentadienyl)lanthanide(III) complexes 2-Ln (Ln=Dy, Ho, Er, Yb) were synthesised by heating the respective ammine adduct 1-Ln in an inert gas atmosphere at temperatures of between 240 and 290 degrees C. X-ray diffraction studies, mass spectrometry and vibrational (IR, Raman) spectroscopy were carried out for several 2-Ln species and proved the formation of dimeric mu(2)-bridged compounds. Species 1-Ln are highly reactive coordination compounds and showed different behaviour regarding the decomposition to 2-Ln. The reaction of 1-Ln and 2-Ln with inorganic bases yielded lanthanide nitride LnN powders with an estimated crystallite size of between 40 and 90 nm at unprecedented low temperatures of 240 to 300 degrees C. Temperature-dependent X-ray powder diffraction and transmission electron microscopy (TEM) investigations were performed and showed that the decomposition reaction yielded nanocrystalline material. Structural optimisations were carried out for 1-Ln and 2-Ln by employing density functional (DFT) calculations. A good agreement was found between the observed and calculated structural parameters. Also, Gibbs free energies were calculated for 1-Ln, 2-Ln and the pyrolysis reaction to the nitride material, and were found to fit well with the expected ranges.

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PubMed2006

An electrochemical and DFT study on selected beta-diketiminato metal complexes.

Selected homoleptic metal beta-diketiminates M(I)L and M(II)L2 [M(I) = Li or K, M(II) = Mg, Ca or Yb; L: L(Ph) = [N(SiMe3)C(Ph)]2CH, L(Bu(t)) = N(SiMe3)C(Ph)C(H)C(Bu(t))N(SiMe3), L* = [N(C6H3Pr(i)2-2,6)C(Me)]2CH] have been studied by cyclic voltammetry (CV). The primary reduction (E(p)red, the peak reduction potential measured vs. SCE in thf containing 0.2 M [NBu4][PF6] with a scan rate 100 mV s(-1) at a vitreous carbon electrode at ambient temperature) is essentially ligand-centred: E(p)red being ca. -2.2 V (LiL(Ph) and KL(Ph)) and -2.4 V [Mg(L(Ph))2, LiL(Bu(t)) and Ca(L(Ph))2], while LiL* is significantly more resistant to reduction (E(p)red = -3.1 V). These observations are consistent with the view that the two (L(Ph)) or single (L(Bu(t))) C-phenyl substituent(s), respectively, are available for -electron-delocalisation of the reduced species, whereas the N-aryl substituents of L* are unable to participate in such conjugation for steric reasons. The primary reduction process was reversible on the CV-time scale only for LiL(Bu(t)), Ca(L(Ph))2 and Yb(L(Ph))2. For the latter this occurs at a potential ca. 500 mV positive of Ca(L(Ph))2, consistent with the notion that the LUMO of Yb(L(Ph))2 has substantial metal character. The successive reversible steps, each separated by ca. 500 mV, indicate that there is strong electronic communication between the two ligands of Yb(L(Ph))2. The overall three-electron transfer sequence shows that the final reduction level corresponds to [Yb(II)(L(Ph))2-(L(Ph))3-]. DFT calculations on complexes Li(L(Ph))(OMe2)2 and Li2(L(Ph))(OMe2)3 showed that both HOMO and LUMO orbitals are only based on the ligand with a HOMO-LUMO gap of 4.21 eV. Similar calculations on a doubly reduced complex Yb[(mu-L(Ph))Li(OMe2)]2 demonstrated that there is a considerable Yb atomic orbital contribution to the HOMO and LUMO of the complex.

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PubMed2006

DFT studies of the methyl exchange reaction between Cp2M-CH3 or Cp2M-CH3 (Cp = C5H5, Cp = C5Me5, M = Y, Sc, Ln) and CH4. Does M ionic radius control the reaction?

The activation energies for the methyl exchange reactions between Cp2M-CH3 and H-CH3 have been calculated for M = Sc, Y and representative metals of the lanthanide family (La, Ce, Sm, Ho, Yb and Lu) with DFT(B3PW91) calculations with large-core pseudopotentials for M. The sigma-bond metathesis reactions are calculated to have lower activation energies for early lanthanides than for late lanthanides and any of group 3 metals. The relative activation barriers are analyzed using the NBO charge distributions in the reactant and in the transition states. It is shown that the methane needs to be polarized in the transition state as H((+delta))-CH3((-delta)) by the reactant, because this sigma-bond metathesis is best viewed as heterolytic cleavage of methane, leading to a proton transfer between two methyl groups in the field of an electropositive M metal. Early lanthanides, which are involved in strongly ionic metal-ligands bonds are thus associated with the lowest activation energies. The ionic radius and the steric effects influence the relative rates of reaction for the complexes of Sc, Y and Lu. In agreement with earlier works of Sherer et al., the experimental reactivity trends found by Tilley are reproduced best with Cp*2M-CH3 (Cp* = C5Me5) rather than Cp2M-CH3 (Cp = C5H5) because the steric bulk of C5Me5 deactivates most the complex where the metal has the smallest ionic radius (Sc). While the steric effects and the influence of the metal ionic radius cannot be neglected, these factors are not the only ones involved in determining the activation barriers of the sigma-bond metathesis reaction.

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PubMed2006

Berry pseudorotation mechanism for the interpretation of the 19F NMR spectrum in PF5 by ab initio molecular dynamics simulations.

For the first time, theoretical evidence that confirms the importance of the Berry pseudorotation process in the interpretation of the 19F NMR spectrum of phosphorus pentafluoride (PF5) is presented. Ab initio molecular dynamics simulations have been performed to generate a large number of configurations used for NMR parameter computations at the density functional theory level. Two different temperatures were set to highlight the effect of pseudorotation process on the NMR spectrum. Average 19F chemical shifts and spin-spin coupling constants calculated for the five fluorine atoms converge towards the NMR equivalence of the five atoms when the Berry pseudorotation mechanism is accounted for.

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PubMed2006

Ab initio dynamic study of the reaction of Cl2LaR (R=H, CH3) with H2.

In this paper, a comparison between "static" and "dynamic" determination of the thermodynamic (DeltarF degrees) and kinetic data (DeltarF#) for the reaction of Cl2LaR (R=H, CH3) and H2 is given. A difference is obtained in the case of the reaction between Cl2LaH and H2 and can be attributed to a failure of the "static" approach based on the harmonic approximation. The influence of the zero point energy correction is also analyzed but does not explain the 30% difference between the two calculated activation energies. The influence of the flatness of the potential energy surface around the transition state is proved as no such an effect is observed for the reaction of Cl2LaCH3 and H2.

Computer Simulation↗

PubMed2005

1,4- vs 1,3-prototropic mechanism for intramolecular double proton transfer reaction in monothiooxalic acid. Theoretical investigation of potential energy surface.

Proton transfer is a very common and important chemical step in many systems. Despite its apparent simplicity, a correct description of this chemical process is difficult from a theoretical point of view. It requires a correct and simultaneous description of a bond breaking and a bond formation. The situation is even much more complicated when two protons are implied. This is the case for monothiooxalic acid, for which two different types (1,3- and 1,4-prototropy) of proton transfers can be invoked. A further problem is the type of the reaction (concerted or not). This paper reports a complete investigation of the potential energy surfaces: characterization of equilibrium points and transitions states. The main conclusion is: the 1,4-prototropic mechanism, mainly considered as a one step concerted exchange of protons, is the most favored from an energetic point of view.

Models, Chemical↗

PubMed2005

On the accuracy of one-component pseudopotential spin-orbit calculations.

Improvements on current one-component extraction procedures of spin-orbit pseudopotentials are investigated for high accuracy computation of spin-orbit coupling energies. By means of the perturbation-theory formalism we first show that spin-orbit pseudopotentials, extracted at the one-component self-consistent-field level from a reference all-electron Dirac-Coulomb or Dirac-Coulomb-Breit calculation, include valence spin-orbit polarization and relaxation effects. As a consequence the use of these pseudopotentials in uncontracted spin-orbit configuration interaction (CI) with singles from the reference ground-state configuration gives rise to double counting of these spin-orbit effects. Two new methods that avoid such double counting have been investigated. The first, so-called "explicit" method, calculates explicitly, by means of a four-component spin-orbit CI, the double-counted spin-orbit effects and removes them from the pseudopotentials. Due to the nonadditivity of the core and valence spin-orbit effects as well as the so-called "pseudovariational collapse," this method is shown to be cumbersome. In the second "implicit" method the spin-orbit pseudopotential is extracted at the spin-orbit polarized and relaxed level by means of a single-excitation spin-orbit CI calculation. Atomic tests on iodine demonstrate the ability of the latter method to solve the double-counting problem.

Journal Article↗

PubMed2005

Atomic spin-orbit pseudopotential definition and its relation to the different relativistic approximations.

A critical analysis of usual shape-consistent spin-orbit pseudopotential extraction procedures is presented, considering the basic requirements of the atomic pseudopotentials. It is based on a perturbative analysis of both reference all-electron Dirac-Coulomb and pseudopotential calculations by means of the formalism developed by Lindgren and Morrisson. In the light of this analysis, we propose a new hybrid extraction of spin-orbit pseudopotentials, taking advantage of both shape-consistent and energy-consistent procedures. These new pseudopotentials are extracted and checked for the (2)P ground state of the halogens.

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PubMed2005

Hydrogen for fluorine exchange in CH4-xFx by monomeric [1,2,4-(Me3C)3C5H2]2CeH: experimental and computational studies.

The monomeric metallocenecerium hydride, Cp'(2)CeH (Cp' = 1,2,4-tri-tert-butylcyclopentadienyl), reacts instantaneously with CH(3)F, but slower with CH(2)F(2), to give Cp'(2)CeF and CH(4) in each case, a net H for F exchange reaction. The hydride reacts very slowly with CHF(3), and not at all with CF(4), to give Cp'(2)CeF, H(2), and 1,2,4- and 1,3,5-tri-tert-butylbenzene. The substituted benzenes are postulated to result from trapping of a fluorocarbene fragment derived by alpha-fluoride abstraction from Cp'(2)CeCF(3). The fluoroalkyl, Cp'(2)CeCF(3), is generated by reaction of Cp'(2)CeH and Me(3)SiCF(3) or by reaction of the metallacycle, [(Cp')(Me(3)C)(2)C(5)H(2)C(Me(2))CH(2)]Ce, with CHF(3), and its existence is inferred from the products of decomposition, which are Cp'(2)CeF, the isomeric tri-tert-butylbenzenes and in the case of Me(3)SiCF(3), Me(3)SiH. The fluoroalkyls, Cp'(2)CeCH(2)F and Cp'(2)CeCHF(2), generated from the metallacycle and CH(3)F and CH(2)F(2), respectively, are also inferred by their decomposition products, which are Cp'(2)CeF, CH(2), and CHF, respectively, which are trapped. DFT(B3PW91) calculations have been carried out to examine several reaction paths that involve CH and CF bond activation. The calculations show that the CH activation by Cp(2)CeH proceeds with a low barrier. The carbene ejection and trapping by H(2) is the rate-determining step, and the barrier parallels that found for reaction of H(2) with CH(2), CHF, and CF(2). The barrier of the rate-determining step is raised as the number of fluorines increases, while that of the CH activation path is lowered as the number of fluorines increases, which parallels the acidity.

Journal Article↗

PubMed2005

Hydrogen for fluorine exchange in C6F6 and C6F5H by monomeric [1,3,4-(Me3C)3C5H2]2CeH: experimental and computational studies.

The net reaction of monomeric Cp'(2)CeH [Cp' = 1,3,4-(Me(3)C)(3)(C(5)H(2))] in C(6)D(6) with C(6)F(6) is Cp'(2)CeF, H(2), and tetrafluorobenzyne. The pentafluorophenylmetallocene, Cp'(2)Ce(C(6)F(5)), is formed as an intermediate that decomposes slowly to Cp'(2)CeF and C(6)F(4) (tetrafluorobenzyne), and the latter is trapped by the solvent C(6)D(6) as a [2+4] cycloadduct. In C(6)F(5)H, the final products are also Cp'(2)CeF and H(2), which are formed from the intermediates Cp'(2)Ce(C(6)F(5)) and Cp'(2)Ce(2,3,5,6-C(6)F(4)H) and from an unidentified metallocene of cerium and the [2+4] cycloadducts of tetra- and trifluorobenzyne with C(6)D(6). The hydride, fluoride, and pentafluorophenylmetallocenes are isolated and characterized by X-ray crystallography. DFT(B3PW91) calculations have been used to explore the pathways leading to the observed products of the exergonic reactions. A key step is a H/F exchange reaction which transforms C(6)F(6) and the cerium hydride into C(6)F(5)H and Cp'(2)CeF. This reaction starts by an eta(1)-F-C(6)F(5) interaction, which serves as a hook. The reaction proceeds via a sigma bond metathesis where the fluorine ortho to the hook migrates toward H with a relatively low activation energy. All products observed experimentally are accommodated by pathways that involve C-F and C-H bond cleavages.

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PubMed2004

An analysis of core effects on shape-consistent pseudopotentials.

Large core (seven-valence electrons) shape-consistent averaged relativistic pseudopotentials (AREP) including core effects have been derived for the halogen series (Cl,Br,I,At). The influence of core effects on the spin-orbit splitting of the halogen and alkali atoms is clearly demonstrated within an all-electron four-component atomic reference calculation by means of a perturbation analysis. In particular, it is shown that AREPs extracted at the Dirac-Coulomb-Fock level, which already include spin-orbit polarization effects, give excellent results for atomic spectroscopy and equilibrium distances of halogen dimers. We also show that in our approach the core effects, included by configuration interaction using the numerical GRASP code, are transferred to the averaged orbital one-electron energy, defined in a perturbational way. This leads to a modification of the extracted AREPs by core effects, which is illustrated by calculations of the first atomic excited states using these AREPs. These results support the validity of including core effects directly in the AREPs extracted in a shape-consistent scheme. The transferability to the atomic excited states as well as to the molecular case is also verified.

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PubMed2004

Quantum chemistry-based interpretations on the lowest triplet state of luminescent lanthanides complexes. Part 1. Relation between the triplet state energy of hydroxamate complexes and their luminescence properties.

In this paper, we evaluate the potential use of theoretical calculations to obtain an energy scale of the lowest ligand-centred triplet excited state in luminescent terbium(III) complexes. In these complexes, non-radiative deactivation of the terbium emitting state via a back-energy transfer process (T1<--Tb(5D4)) is a common quenching process. Consequently the prediction of the energy gap between these two excited states should be useful for programming highly luminescent Tb(III) systems. We report on a strategy based upon experimental and theoretical investigations of the excited state properties of a series of four simple aromatic hydroxamate ligands coordinated to Tb(III) and Gd(III) ions. By using previously reported crystallographic data, the structural and energies properties of these systems were investigated in the ground and first excited triplet states at the density functional theory (DFT) level of calculations. Our theoretical results are consistent with a triplet excited state T1 which is localised on one ligand only and whose the energy level is independent of the lanthanide ion nature (Tb(III), Gd(III)). A good agreement between the calculated adiabatic transition energies and experimental data derived from emission spectra is obtained when a corrective term is considered. These satisfactory results are an indication that this type of modelling can lead to discriminate in terms of the position of the lowest ligand triplet energy level the best antenna among a family of chromophoric compounds. In addition this theoretical approach has provided indications that the difference between the adiabatic transition energies of all the investigated complexes can be mainly explained by metal-ligand electrostatic interactions. The influence of the number of antennae on the quantum yield and the luminescence lifetime is discussed.

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PubMed2003

Using effective group potential methodology for predicting organometallic complex properties.

Using the Effective Group Potentials (EGP) method, optimal geometries, harmonic vibrational frequencies, and relative energies of different sets of metal complexes are calculated. All of the systems under consideration contain the cyclopentadienyl (Cp) ligand. They are as follows: (i). Group V metal Atom complexes showing one Cp ligand, (ii). a tetrameric Al-Cp compound with four Cp ligands, (iii). homometallic lutetium hydrides containing six cyclopentadienyl rings. Various electron correlation treatments have been carried out. All of the results compare very satisfactorily with available experimental data and with all-electron ab initio calculations performed for this work or published in the literature. Furthermore, the performance of the EGP method was tested on a rather large complex for which experimental evidence exists, but no all-electron calculation has been reported so far.

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PubMed2003

Mono-, di-, and Ttianionic beta-diketiminato ligands: a computational study and the synthesis and structure of [(YbL)(3)(THF)], L = [[N(SiMe(3))C(Ph)](2)CH].

A trinuclear Yb beta-diketiminato cluster [(YbL)3(THF)] (1) (L = {N(SiMe3)C(Ph)}2CH), containing L-1 and L-3 as well as Yb(II) and Yb(III) centers, was obtained by treatment of [YbL2] with Yb-naphthalene and was characterized by X-ray crystallography. The electron distribution in 1 and the Yb(II)/L-2 complex [Yb{(mu-L)Li(THF)}2] (2) was analyzed by DFT and ONIOM (QM/MM) calculations.

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PubMed2003

Some structural and electronic properties of MX3 (M = Ln, Sc, Y, Ti+, Zr+, Hf+; X = H, Me, Hal, NH2) from DFT calculations.

The geometry of trivalent homoleptic d0 MX3 (X = H, Me, Hal, NH2) complexes for the entire lanthanide family, neutral group 3 and cationic group 4 metal center complexes have been studied with DFT(B3PW91) calculations. The geometrical parameters are in good agreement with the available experimental data. The degree of pyramidalization of the metal is discussed. The hydride and alkyl complexes are strongly pyramidal. In the case of the halide, a pyramidal structure is preferred for fluoride and the systems become increasingly planar with heavier halides. The geometrical trends with X are similar for group 3, group 4 and lanthanide complexes. However group 3 complexes are almost planar, group 4 strongly pyramidal and lanthanide intermediate. The lanthanide contraction is reproduced. A natural bond orbital (NBO) charge analysis is used to rationalize the results. This highlights the similarities and differences in the M-X bonding in the three families of complexes. In all cases, the pyramidalization is related to the participation of the valence d orbitals in the M-X bonds but the M-X bond is mostly ionic in lanthanide and considerably more covalent for the d transition metals. The hydride and alkyl complexes, which have more covalent character than the halide complexes are more pyramidal. In the case of the halide complexes, the fluoride complexes, in which there is the least population of the M d orbitals, are found to be more pyramidal because the increasing covalency with heavier halide stabilizes the planar structure through dpi-ppi interaction. The electronic metal d-p transition of the free ion is shown to be a good indicator of the pyramidalization at M although these values should only be used qualitatively. The strong ionic character of the Ln-X bond gives a rationale for the more important elongation of the beta Si-C bond in La(CH(SiMe3)2)3 than in La(N(SiMe3)2)3. The elongation is shown to be in part due to the negative hyperconjugation of the lone pair used for the Ln-ligand bonds in the beta bonds.

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PubMed2002

A DFT study of SiH(4) activation by Cp(2)LnH.

A theoretical study of SiH(4) activation by Cp(2)LnH complexes for the entire series of lanthanides has been carried out at the DFT-B3PW91 level of theory. The reaction paths corresponding to H/H exchange and silylation, formation of Cp(2)Ln(SiH(3)), have been computed. They both occur via a single-step sigma-bond metathesis mechanism. For the athermal H/H exchange reaction, the calculated activation barrier averages 1.8 kcal.mol(-)(1) relative to the precursor adduct Cp(2)LnH(eta(2)-SiH(4)) for all lanthanide elements. The silylation path is slightly exogenic (DeltaE approximately -6.5 kcal.mol(-1)) with an activation barrier averaging 5.2 kcal.mol(-1) relative to the precursor adduct where SiH(4) is bonded by two Si-H bonds. Both pathways are therefore thermally accessible. The H/H exchange path is calculated to be kinetically more favorable whereas the silylation reaction is thermodynamically preferred. The reactivity of this familly of lanthanide complexes with SiH(4) contrasts strongly with that obtained previously with CH(4). The considerably lower activation barrier for silylation relative to methylation is attributed to the ability of Si to become hypervalent.

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