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Biomedical subjects

L Peliti

Publications and source records attributed to L Peliti.

15 recordsLinked to original sources
PubMed2006

Fluctuation relations for a driven Brownian particle.

We consider a driven Brownian particle, subject to both conservative and nonconservative applied forces, whose probability evolves according to the Kramers equation. We derive a general fluctuation relation, expressing the ratio of the probability of a given Brownian path in phase space with that of the time-reversed path, in terms of the entropy flux to the heat reservoir. This fluctuation relation implies those of Seifert, Jarzynski, and Gallavotti-Cohen in different special cases.

Journal Article↗
PubMed2005

Work-probability distribution in systems driven out of equilibrium.

We derive the differential equation describing the time evolution of the work probability distribution function of a stochastic system which is driven out of equilibrium by the manipulation of a parameter. We consider both systems described by their microscopic state or by a collective variable which identifies a quasiequilibrium state. We show that the work probability distribution can be represented by a path integral, which is dominated by "classical" paths in the large system size limit. We compare these results with simulated manipulation of mean-field systems. We discuss the range of applicability of the Jarzynski equality for evaluating the system free energy using these out-of-equilibrium manipulations. Large fluctuations in the work and the shape of the work distribution tails are also discussed.

Journal Article↗
PubMed2001

Effective-area elasticity and tension of micromanipulated membranes.

We evaluate the effective Hamiltonian governing, at the optically resolved scale, the elastic properties of micromanipulated membranes. We identify floppy, entropic-tense and stretched-tense regimes, representing different behaviors of the effective-area elasticity of the membrane. The corresponding effective tension depends on the microscopic parameters (total area, bending rigidity) and on the optically visible area, which is controlled by the imposed external constraints. We successfully compare our predictions with recent data on micropipette experiments.

Biopolymers↗
PubMed2000

Why is the DNA denaturation transition first order?

We study a model for the denaturation transition of DNA in which the molecules are considered as being composed of a sequence of alternating bound segments and denaturated loops. We take into account the excluded-volume interactions between denaturated loops and the rest of the chain by exploiting recent results on scaling properties of polymer networks of arbitrary topology. The phase transition is found to be first order in d = 2 dimensions and above, in agreement with experiments and at variance with previous theoretical results, in which only excluded-volume interactions within denaturated loops were taken into account. Our results agree with recent numerical simulations.

Animals↗
PubMed1994

Collective adaptation in a statistical model of an evolving population.

We simulate asexually and sexually reproducing model populations evolving in a rugged fitness landscape where fit and unfit genotypes are distributed at random, and where all fit genotypes have the same a priori probability of reproduction. Varying the fraction chi of unfit genotypes at a fixed mutation rate we observe a strikingly different behavior for the two reproduction mechanisms. For the asexually reproducing population, the effective mutation rate lambda decreases roughly proportionally to (1-chi), and the fraction delta of sterile individuals--processing an unfit genotype--accordingly increases roughly proportionally to chi. On the other hand, lambda remains approximately constant (and delta increases proportionally to chi) for small values of chi:but, at a critical value chi*, both lambda and delta suddenly drop. This corresponds to the transition to an adaptive regime where the average fitness of the population is enhanced. We show how this transition can be interpreted in terms of an improvement of the collective fitness of the population.

Biological Evolution↗
PubMed1991

[A statistical model of evolution with stabilizing selection].

We consider a population of fixed size and reproducing asexually, evolving in a rugged fitness landscape. Selection takes place only via the elimination of individuals with unfit genomes. Unfit genotypes are distributed at random in genotypic space. The genetic structure of the population and the speed of genetic drift are explicitly computed in the infinite genome limit.

Biological Evolution↗
PubMed1989

Population dynamics in a spin-glass model of chemical evolution.

We introduce a simple model describing the evolution of a population of information-carrying macromolecules. We discuss the asymptotic dependence of the variability of the population on different parameters, representing the severity or the fluctuations of the environment. We show the existence of a transition separating a neutralist evolutionary regime from a trapped one. We investigate the dependence of the evolutionary behavior of the population on the correlation properties of the fitness landscape.

Biological Evolution↗