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Biomedical subjects

K N Houk

Publications and source records attributed to K N Houk.

158 records · Page 9Linked to original sources
PubMed1997

A model for binding of structurally diverse natural product inhibitors of protein phosphatases PP1 and PP2A.

Protein phosphatases play significant roles in signal transduction pathways pertaining to cell proliferation, gene expression, and neurotransmission. Serine/threonine phosphatases PP1 and PP2A, which are closely related in primary structure (approximately 50%), are inhibited by a structurally diverse group of natural toxins. As part of our study toward understanding the mechanism of inhibition displayed by these toxins, we have developed research in two directions: (1) The standardization of an assay to be used in acquisition of the structure--activity relationship of inhibition data is reported. This nonradioactive assay affords detection levels of molecular phosphate released from a phosphorylated hexapeptide in subnanomolar quantities. The comparison of our IC50 values of these inhibitors against corresponding literature data provided validation for our method. (2) Computational analysis provided a global model for binding of these inhibitors to PP1. The natural toxins were shown to possess remarkably similar three-dimensional motifs upon superimposition and van der Waals minimization within the PP1 active site.

Antifungal Agents↗
PubMed1997

A proficient enzyme revisited: the predicted mechanism for orotidine monophosphate decarboxylase.

A mechanism is proposed to explain the activity of orotidine 5'-monophosphate decarboxylase (ODCase). This enzyme is the one of the most proficient known, with a catalytic proficiency (kcat/Km)/knon = 10(23) M-1. Quantum mechanical calculations predict a mechanism involving a stabilized carbene intermediate, which represents a previously unrecognized mode of enzymatic activity for ODCase. The proposed mechanism involves proton transfer from a weak acid (pKa = 7, where Ka is the acid constant) concerted with decarboxylation, in a nonpolar enzyme environment. Such a mechanism makes possible different approaches to the design of ODCase inhibitors. Furthermore, the prediction that general acid catalysis may only be effective in low dielectric media is of general significance for understanding the activity of many enzymes.

Barbiturates↗
PubMed1996

Gating as a control element in constrictive binding and guest release by hemicarcerands.

Theoretical modeling of the dynamics of complexation and decomplexation of guest molecules by container molecules reveals that gating has a critical influence on the ease of formation and stability of host-guest complexes. Hosts equipped with gates can form very stable complexes with a variety of guests under readily achievable conditions. Gating involves conformational processes of the host molecule that alter the size of the portals through which guest molecules pass. "French door" and "sliding door" mechanisms of gate opening are identified.

Acetonitriles↗
PubMed1996

Two isoxazolidines.

The crystal structures of trans-phenyl-1,6-dioxa-2-azaspiro[4,4]non- 3-yl ketone, C19H19NO3, and (3 alpha,3a alpha,6a alpha)-hexahydro-2-phenylfuro[3,2-d]isoxazol-3-yl phenyl ketone, C18H17NO3, are reported. In both compounds, the isoxazolidine rings adopt envelope conformations in which the O atom is bent out of the approximate plane of the other four ring atoms. Modest to negligible endo selectivities were confirmed in 1,3-dipolar cycloadditions of benzoylmethyleneaniline N-oxide with enol ethers.

Crystallography, X-Ray↗
PubMed1993

Control of the exo and endo pathways of the Diels-Alder reaction by antibody catalysis.

Catalytic antibodies that control the reaction pathways of the Diels-Alder cycloaddition have been generated. One antibody catalyzes the favored endo and the other the disfavored exo pathway to yield the respective cis and trans adducts in enantiomerically pure form. A comparison of the x-ray structure of the hapten with the calculated geometry of the transition structure showed that [2.2.2] bicyclic compounds are excellent mimics of the transition state of the Diels-Alder reaction. To achieve catalysis and the high degree of stereoselectivity shown here, the antibody must simultaneously control the conformation of the individual reactants and their relation to each other. In the case of the disfavored process, binding energy must be used to reroute the reaction along a higher energy pathway. The rerouting of reaction pathways has become a major focus of antibody catalysis and other disfavored reactions can be expected to be catalyzed so long as the energy barrier is not extreme. The energy requirements needed for absolute control of all of the stereoisomers of many Diels-Alder reactions fall in the energy range (approximately 20 kilocalories per mole) deliverable by antibody binding.

Acrylamide↗
PubMed1986

Theory and modeling of stereoselective organic reactions.

Theoretical investigations of the transition structures of additions and cycloadditions reveal details about the geometries of bond-forming processes that are not directly accessible by experiment. The conformational analysis of transition states has been developed from theoretical generalizations about the preferred angle of attack by reagents on multiple bonds and predictions of conformations with respect to partially formed bonds. Qualitative rules for the prediction of the stereochemistries of organic reactions have been devised, and semi-empirical computational models have also been developed to predict the stereoselectivities of reactions of large organic molecules, such as nucleophilic additions to carbonyls, electrophilic hydroborations and cycloadditions, and intramolecular radical additions and cycloadditions.

Chemistry, Organic↗
PubMed1983

Geometries and conformational processes in phencyclidine and a rigid adamantyl analogue: variable-temperature NMR, X-ray crystallographic, and molecular mechanics studies.

The barriers to rotation of the aryl groups of m-nitrophenyladamantylpiperidine and m-nitrophenylcyclohexylpiperidine have been studied by variable-temperature NMR spectroscopy. NMR spectra of the free bases and salts of phenyladamantylpiperidine and phenylcyclohexylpiperidine (phencyclidine) and an X-ray crystal structure of the adamantane derivative verify the preferred conformations of these molecules in solution and the solid state. Force-field calculations provide additional information on the energetics of conformational processes in these molecules.

Adamantane↗
PubMed1982

Structure-activity relationships for hallucinogenic N,N-dialkyltryptamines: photoelectron spectra and serotonin receptor affinities of methylthio and methylenedioxy derivatives.

Serotonin receptor affinity and photelectron spectral data were obtained on a number of substituted N,N-dimethyltryptamines. Evidence is presented that electron-donating substituents in the 5-position lead to enhanced behavioral disruption activity and serotonin receptor affinity as compared to unsubstituted N,N-dimethyltryptamine and analogues substituted in the 4- or 6-position. Some correlation was found between ionization potentials and behavioral activity, which may have implications concerning the mechanism of receptor binding.

Animals↗
PubMed1981

Photoelectron spectra of psychotropic drugs. 6. Relationships between the physical properties and pharmacological actions of amphetamine analogues.

The valence ionization potentials of seven additional members of a series of 2,4,5-trisubstituted amphetamines (1-phenyl-2-aminopropanes) were measured by UV photoelectron spectroscopy. These and previously published data provide experimental measures of the gross electron-donor ability of the aromatic rings of 23 amphetamines. Analogues bearing the 2,5-dimethoxy orientation were found to possess the lowest ionization potentials (IPs); for the analogously X-substituted compounds, the IPs increased in the order of 2,5-(OMe)2-4-X less than 2,4-(OMe)2-5-X less than 4,5-(OMe)2-2-X. Relationships between human psychotomimetic activity (MU), rabbit hyperthermia (SRU), serotonergic receptor affinity (pA2), and charge-transfer complex stabilities (KDNB) were evaluated statistically. A good correlation (r2 = 0.92) was established between the human and rabbit potencies, but poorer correlations were obtained between animal potencies and pA2's (r2 = 0.68-0.69) or KDNB's (r2 = 0.03!). Analysis of the regression relationships between these pharmacological measures and two physical properties, IP and lipid solubility (as modeled by log P), were explored. In general, greater potency is associated with decreasing IP and increasing log P. However, numerous exceptions to single parameter regressions are found. The unusually great potency of the 2,5-(OMe)2-4-X analogues, while qualitatively related to the physical properties, is quantitatively underestimated by these predictors. However, inclusion of a parameter (pi 4) which explicitly acknowledges the type of the 4-substituent leads to much improved correlations. These results support previous suggestions that 4-substituents interact directly with the receptor.

Amphetamines↗
PubMed1977

Lysergic acid diethylamide. Photoelectron ionization potentials as indices of behavioral activity.

The photoelectron spectrum of lysergic acid diethylamide (LSD) reveals five ionization potentials (IP's) between 7.25 and 9.75 eV arising from the aromatic (pi) portion of the molecule and IP's of 8.4 eV arising from the tertiary amine and 8.5-9.0 and 9.1 eV arising from the amide group. Comparisons of the IP's of LSD, and of phenethylamines and tryptamines reported by us elsewhere, with activities of these compounds in rat and human behavioral tests show that increasing activity is paralleled by decreasing IP.

Animals↗