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K N Houk

Publications and source records attributed to K N Houk.

At least 109 records · Page 6Linked to original sources
PubMed2003

Peroxynitrate and peroxynitrite: a complete basis set investigation of similarities and differences between these NOx species.

Peroxynitric acid/peroxynitrate (PNA) rivals peroxynitrous acid/peroxynitrite (PNI) in importance as a reactive oxygen species. These species possess similar two-electron oxidative behavior. On the other hand, stark differences exist in the stability of these molecules as a function of pH and in the presence of CO(2), and also in the types of bond homolysis reactions that PNA and PNI may undergo. Using CBS-QB3 theory, we examine these similarities and differences. The activation barriers for two-electron oxidation of NH(3), H(2)S, and H(2)C=CH(2) by PNA and PNI are found to be generally similar. The O-O BDE of O(2)NOOCO(2-) is predicted to be 26 kcal/mol greater than that of ONOOCO(2-). This accounts for the insensitivity of PNA to the presence of CO(2). Likewise, the O-O BDE of O(2)NOOH is predicted to be 19 kcal/mol greater than that of ONOOH, in excellent agreement with experiment. The fundamental principle underlying the large differences in O-O BDEs between PNA and PNI species is that the NO(2) that is formed from PNI can relax from the (2)B(2) excited state to the (2)A(1) ground state, whereas no such comparable state change occurs with NO(3) from PNA. Decomposition of the anions O(x)NOO(-) is more complex, with the energetics influenced by solvation. ONOO(-) can homolyze to yield NO/O(2-); however, this pathway represents a thermodynamic "dead end" since the radical pairs generated by homolysis should mostly revert to starting material. However, decomposition of O(2)NOO(-) yields the stable products NO(2-)/(3)O(2), a couple that is more stable than starting material. This may occur either by initial formation of NO(2)/O(2-) or NO(2-)/(1)O(2), with the latter intermediates thermodynamically favored both in the gas phase and in solution. Given the extremely fast back-reaction of the homolysis products, heterolysis probably dominates the observed O(2)NOO(-) decomposition kinetics. This is in agreement with the first of two "kinetically indistinguishable" mechanistic possibilities proposed for O(2)NOO(-) decomposition (Goldstein, S.; Czapski, G.; Lind, J.; Merényi, G. Inorg. Chem. 1998, 37, 3943-3947).

Models, Molecular↗
PubMed2003

Concerted rearrangement versus heterolytic cleavage in anionic [2,3]- and [3,3]-sigmatropic shifts. A DFT study of relationships among anion stabilities, mechanisms, and rates.

The anionic [2,3] sigmatropic Wittig rearrangements of deprotonated 4-hetera-1-pentenes and the anionic [3,3] sigmatropic Cope rearrangements of 3-substituted-1,5-hexadienes were explored by using density functional theory calculations. While the deprotonated anionic 3-hydroxy-1,5 hexadiene (2a), 3-thiohydroxy-1,5-hexadiene (2c), and 3-formamidyl-1,5-hexadiene (2d) Cope substrates undergo concerted rearrangements, the deprotonated anionic 3-amino-1,5-hexadiene (2b) and 3-methyl-1,5-hexadiene (2e) Cope substrates follow nonconcerted cleavage/recombination pathways. We have also found that the gas-phase Wittig (1a), aza-Wittig (1b), and carba-Wittig (1c) reactions proceed via nonconcerted cleavage/recombination pathways. These results are compared with previous results on the Cope rearrangements of deprotonated anionic 3-hydroxy-1,5-hexadiene and 3-amino-1,5-hexadiene anions. A previously established model that heterolytic and homolytic bond dissociation energies can be used to predict how anionic amino- and oxy-Cope substrates will react is generalized to account for the reactivity of other Cope substrates as well as for the Wittig rearrangements. There is also a relationship between the basicity of the anionic substituent in the Cope rearrangement and the reaction pathway: the more basic the substituent anion, the less stable it is, and the more likely it is that cleavage will occur. A first step toward studying these reactions in solution was also taken by calculating energetics for some of the rearrangements with a lithium counterion present.

Journal Article↗
PubMed2003

Experimental determination of the absolute enantioselectivity of an antibody-catalyzed Diels-Alder reaction and theoretical explorations of the origins of stereoselectivity.

The exo and endo Diels-Alder adducts of p-methoxycarbonylbenzyl trans-1,3-butadiene-1-carbamate and N,N-dimethylacrylamide have been synthesized, and the absolute configurations of resolved enantiomers have been determined. On the basis of this information, the absolute enantioselectivities of the Diels-Alder reaction catalyzed by antibodies 13G5 and 4D5 as well as other catalytic antibodies elicited in the same immunizations have been established. The effects of different arrangements of catalytic residues on the structure and energetics of the possible Diels-Alder transition states were modeled quantum mechanically at the B3LYP/6-311++G**//B3LYP/6-31+G** level of theory. Flexible docking of these enantiomeric transition states in the antibody active site followed by molecular dynamics on the resulting complexes provided a prediction of the transition-state binding modes and an explanation of the origin of the observed enantioselectivity of antibody 13G5.

Acrylamides↗
PubMed2003

Quantum mechanical predictions of the stereoselectivities of proline-catalyzed asymmetric intermolecular aldol reactions.

Quantum mechanical calculations were employed to predict the ratio of four stereoisomeric products expected from two complex reactions involving the aldol reactions of cyclohexanone with benzaldehyde or with isobutyraldehyde catalyzed by (S)-proline. Experimental tests of these predictions provide an assessment of the state-of-the-art in quantum mechanical prediction of products of complex organic reactions in solution.

Alcohols↗
PubMed2003

Mechanism of ene reactions of singlet oxygen. A two-step no-intermediate mechanism.

The mechanism of the ene reaction of singlet ((1)delta(g)) oxygen with simple alkenes is investigated by a combination of experimental isotope effects and several levels of theoretical calculations. For the reaction of 2,4-dimethyl-3-isopropyl-2-pentene, the olefinic carbons exhibit small and nearly equal (13)C isotope effects of 1.005-1.007, while the reacting methyl groups exhibit (13)C isotope effects near unity. In a novel experiment, the (13)C composition of the product is analyzed to determine the intramolecular (13)C isotope effects in the ene reaction of tetramethylethylene. The new (13)C and literature (2)H isotope effects are then used to evaluate the accuracy of theoretical calculations. RHF, CASSCF(10e, 8o), and restricted and unrestricted B3LYP calculations are each applied to the ene reaction with tetramethylethylene. Each predicts a different mechanism, but none leads to reasonable predictions of the experimental isotope effects. It is concluded that none of these calculations accurately describe the reaction. A more successful approach was to use high-level, up to CCSD(T), single-point energy calculations on a grid of B3LYP geometries. The resulting energy surface is supported by its accurate predictions of the intermolecular (13)C and (2)H isotope effects and a very good prediction of the reaction barrier. This CCSD(T)//B3LYP surface features two adjacent transition states without an intervening intermediate. This is the first experimentally supported example of such a surface and the first example of a valley-ridge inflection with significant chemical consequences.

Alkenes↗
PubMed2003

Catalysis on the coastline: theozyme, molecular dynamics, and free energy perturbation analysis of antibody 21D8 catalysis of the decarboxylation of 5-nitro-3-carboxybenzisoxazole.

Antibody 21D8 catalyzes the decarboxylation of 5-nitro-3-carboxybenzisoxazole. The hapten used was designed to induce an antibody binding site with anion binders for the carboxylate, plus a nonpolar environment to accelerate decarboxylation. A recent X-ray crystal structure of 21D8 has shown that the binding pocket contains an array of both polar and charged residues. Nevertheless, 21D8 is able to catalyze a reaction that involves a decrease in polarity from reactant to transition state. The origins of this phenomenon were explored using various computational strategies-quantum mechanics, theozyme models, docking, molecular dynamics, free energy perturbation, and linear interaction energy-the combination of which has produced a consistent picture of catalysis. By partially desolvating the charged carboxylate, 21D8 manages to effect "catalysis on the coastline," without burying the carboxylate in a nonpolar region of the binding pocket. The results have implications for that broad class of enzyme and antibody catalyzed reactions that involve the conversion of a substrate with a relatively localized charge into a transition state with a highly dispersed charge.

Algorithms↗
PubMed2003

Kinetic and stereochemical evidence for the involvement of only one proline molecule in the transition states of proline-catalyzed intra- and intermolecular aldol reactions.

Contrary to the widely accepted mechanism of the Hajos-Parrish-Eder-Sauer-Wiechert reaction, we have obtained evidence for the involvement of only one proline molecule in the transition states of both inter- and intramolecular aldol reactions. Our conclusions are based on kinetic measurements and the absence of nonlinear and dilution effects on the asymmetric catalysis, and are supported by B3LYP/6-31G* calculations. Complementary to recent theoretical studies, our results provide the foundation of a unified enamine catalysis mechanism of proline-catalyzed inter- and intramolecular aldol reactions.

Alcohols↗
PubMed2002

The ene reactions of nitroso compounds involve polarized diradical intermediates.

The ene reactions of nitroso compounds were studied with B3LYP/6-31G* geometry optimizations and energy calculations, along with single point energy evaluations using CASPT2/6-31G** and UCCSD(T)/6-311+G* methods. Reactions of HNO with propene and of MeNO and p-NO2C6H4NO with propene or substituted alkenes were also studied. The reaction mechanism is stepwise and involves a polarized diradical intermediate. The electronic structure of this intermediate is between that of a closed shell polar species and that of a pure diradical, and it is stabilized by polar solvents. A weak C-N bonding interaction combined with a CH-O hydrogen bond leads to heightened barriers to rotation about formally single bonds compared to conventional diradicals. Consequently, rotation is slower than hydrogen abstraction and cyclization to form an aziridine N-oxide. This aziridine N-oxide does not lead to ene products without subsequent ring opening but provides a mechanism for the RNO moiety to translate from one end of the alkene to the other. B3LYP calculations are also able to reproduce kinetic isotope effects and regioselectivity.

Journal Article↗
PubMed2002

Origins and predictions of stereoselective antibody catalysis: theoretical analysis of Diels-Alder catalysis by 39A11 and its germ-line antibody.

The binding of enantiomeric haptens and transition states by the Schultz Diels-Alderase antibody 39A11 and its germ-line antibody were studied theoretically. The mechanisms by which one hapten and one transition state stereoisomer is recognized selectively are explored with docking simulations and quantum mechanical models. Transition states of the relevant Diels-Alder reaction were located with density functional theory. A prediction is made that the stereoselectivity of 39A11 will be achieved by two strategically placed hydrogen bonds and pi-stacking interactions of the maleimide with a binding-site tryptophan, arranged so as to coordinate one enantiomeric transition state. Binding of other ligands by antibody 39A11 and the germ-line antibody has also been investigated. The polyspecific nature of 39A11 and its germ-line precursor was found to originate from the general ability of the binding pockets to achieve hydrophobic binding of small organic substrates. Comparison of the highly homologous progesterone and Diels-Alderase antibodies (DB3, 1E9, and 39A11) highlights the fact that differences of several key residues in the binding pockets are sufficient to confer selectivity for different antigens.

Amino Acid Sequence↗
PubMed2002

Intramolecular cycloadditions of cyclobutadiene with olefins.

Intramolecular cycloadditions between cyclobutadiene and olefins can provide highly functionalized cyclobutene-containing products. The outcome of the reaction depends on the nature of the tether connecting the two reactive partners in the cycloaddition. Electronically unactivated olefins attached to cyclobutadiene through a three-atom, heteroatom-containing tether yield successfully the desired cycloadducts, whereas the corresponding substrates without a heteroatom linkage or with a longer tether are less prone to undergo the intramolecular cycloaddition. Calculations were used to help uncover some of the factors that influence the course of the cycloaddition. Successful intramolecular reactions usually require either electronic activation of the dienophile, conformational restriction of the tether, or a slower oxidation protocol. In general, a facile intermolecular dimerization of cyclobutadiene is the major process that competes with the intramolecular cycloaddition.

Alkenes↗
PubMed2002

Electrostatic interactions between substituents as regioselectivity control elements in Diels-Alder cycloadditions. A DFT study of cycloadditions of 1-methoxy-4-trimethylsiloxy dienes with acrylonitrile.

The regioselectivities of Diels-Alder reactions of 1-methoxy-4-trimethylsiloxy-1,3-butadiene and the corresponding o-xylylene with acrylonitrile were explored with density functional theory. The transition state of the reaction of the diene with acrylonitrile was studied in both the gas phase and in a low dielectric (epsilon = 2.247) solvent. The regioselectivities of these reactions are predicted to be controlled by the direct electrostatic interactions between the diene and dienophile substituents. The electron-donating capacities of methoxy and trimethylsiloxy substituents are shown to be very similar and to not contribute to regioselectivity control. A prediction is made that the cycloadditions of the o-xylylene will be unselective, while 1-methoxy-4-trimethylsiloxy-1,3-butadiene will give a small preference ( approximately 5:1) in favor of the proximal methoxy and cyano groups. The thermochromic behavior of trans-disubstituted disiloxy benzocyclobutene was also explored.

Acrylonitrile↗
PubMed2002

"H/Vinyl" and "Alkyl/Vinyl" conical intersections leading to carbene formation from the excited states of cyclohexene and norbornene.

The photochemical [1,2]-shifts leading to carbene intermediates from cyclohexene and norbornene have been studied using CASSCF calculations and a 6-31G* basis set. In each case, a S(1)/S(0) conical intersection hyperline was identified that extends from the region of the reactant excited state to the carbene product. It is traditionally thought that the Rydberg R(pi,3s) state is responsible for carbene formation on photolysis of cyclic alkenes, but these new results indicate an efficient mechanism for carbene formation following excitation to the (1)(pipi*) state. This pathway is essentially barrierless and involves internal conversion to the ground-state surface via conical intersections between the excited zwitterionic valence state and the ground-state surface, similar to those responsible for cis-trans isomerization in ethene and other acyclic alkenes. These results are in excellent agreement with recent experimental data obtained using femtosecond spectroscopy.

Journal Article↗
PubMed2002

Relationships between carbocation stabilities and electrophilic reactivity parameters, E: quantum mechanical studies of benzhydryl cation structures and stabilities.

Quantum chemical calculations of the affinities of benzhydryl cations (XC(6)H(4))(2)CH(+) for the methyl anion, hydroxide, and hydride anion have been performed up to the B3LYP/6-311++G(3df,2pd)//B3LYP/6-31G(d,p) level and compared with rate and equilibrium constants in solution. An excellent linear correlation between the empirical electrophilicity parameter E (by log k = s(N + E); Mayr, H.; Bug, T.; Gotta, M. F.; Hering, N.; Irrgang, B.; Janker, B.; Kempf, B.; Loos, R.; Ofial, A. R.; Remennikov, R.; Schimmel, H. J. Am. Chem. Soc. 2001, 123, 9500-9512) and the calculated methyl anion affinities ranging over 46.5 kcal mol(-1) is found that reproduces the electrophilicity parameters E which range from -10 to +6 with a standard deviation of +/-0.26 (11 points). The calculated OH(-) and H(-) affinities correlate with the calculated CH(3)(-) affinities with a slope of 1.00, indicating that the relative anion affinities of benzhydrylium ions are independent of the nature of the reference base. Linear correlations of the experimental pK((R)(+)) values and chloride ion affinities in solution with the calculated anion affinities in the gas phase indicate that solvation attenuates the differences of carbocation stabilization in the gas phase but does not affect the relative differences. Application of Marcus theory shows that only reaction series with alpha = partial differential DeltaG(++)/ partial differential Delta(r)G degrees = 0.5 corresponding to a slope parameter of s = 0.67 can have constant intrinsic barriers. The slope parameters s found for pi-nucleophiles and C-H hydride donors (s approximately equal 1) are interpreted by a decrease of the intrinsic barriers with increasing electrophilicities of the carbocations. On the other hand, a value of s < or = 0.67 as found for many n-nucleophiles as well as for Si-H, Ge-H, or Sn-H hydride donors is indicative of intrinsic barriers which are constant or slightly increase with increasing electrophilicity of the carbocation.

Journal Article↗
PubMed2002

Conformation-dependent state selectivity in O-O cleavage of ONOONO: an "inorganic cope rearrangement" helps explain the observed negative activation energy in the oxidation of nitric oxide by dioxygen.

ONOONO has been proposed as an intermediate in the oxidation of nitric oxide by dioxygen to yield nitrogen dioxide. The O-O bond breaking reactions of this unusual peroxide, and subsequent rearrangements, were evaluated using CBS-QB3 and B3LYP/6-311G hybrid density functional theory. The three stable conformers (cis,cis-, cis,trans-, and trans,trans-ONOONO, based on the O-N-O-O dihedral angles of either approximately 0 degrees or approximately 180 degrees ) are predicted to have very different O-O cleavage barriers: 2.4, 13.0, and 29.8 kcal/mol, respectively. These large differences arise because bond breaking leads to correlation of the nascent NO(2) fragments with either the ground (2)A(1) state or the excited (2)B(2) state of NO(2), depending on the starting ONOONO conformation. A cis-oriented NO(2) fragment correlates with the (2)A(1) state, whereas a trans-oriented NO(2) fragment correlates with the (2)B(2) state. Each NO(2) fragment that correlates with (2)A(1) lowers the O-O homolysis energy by approximately 15 kcal/mol, similar to the approximately 17-25 kcal/mol (2)A(1) --> (2)B(2) energy difference in NO(2). Hence, this provides an unusual example of conformation-dependent electronic state selectivity. The O-O bond homolysis of cis,cis-ONOONO is particularly interesting because it has a very low barrier and arises from the most stable ONOONO conformer, and also due to obvious similarities to the well-known [3,3]-sigmatropic shift of 1,5-hexadiene, i.e., the Cope rearrangement. As an additional proof of our state selectivity postulate, a comparison is also made to breakage of the O-O bond of cis,cis-formyl peroxide, where no significant stabilization of the transition state is available because the (2)A(1) and (2)B(2) states of formyloxy radical are near-degenerate in energy. In the case of trans,trans-ONOONO, the O-O bond breaking transition state is a concerted rearrangement yielding O(2)NNO(2), whereas for cis,cis- and cis,trans-ONOONO, the initially formed NO(2) radical pairs can undergo further rearrangement to yield ONONO(2). It is proposed that previous spectroscopic observations of certain N=O stretching frequencies in argon-matrix-isolated products from the reaction of NO with O(2) (or (18)O(2)) are likely from ONONO(2), not the OONO radical as reported.

Journal Article↗
PubMed2002

Epoxidations by peracid anions in water: ambiphilic oxenoid reactivity and stereoselectivity.

[reaction: see text] Transition structures have been located for oxygen transfer from performate anion to ethylene, propene, vinylamine, vinyl chloride, vinyl cyanide, and 2-propen-1-ol at the B3LYP/6-31+G(d,p) level in a CPCM continuum model for water. Oxygen transfer is concerted, except for acrylonitrile, which is stepwise. Peracid anions react as ambiphilic oxygen donors. Predictions are made about the diastereoselectivity of epoxidations of acylic, chiral, and allylic alcohols in an alkaline solution, and one is verified experimentally.

Anions↗
PubMed2002

The origin of endo stereoselectivity in the hetero-Diels-Alder reactions of aldehydes with ortho-xylylenes: CH-pi, pi-pi, and steric effects on stereoselectivity.

Theoretical studies of stereoselectivity have been carried out with B3LYP and MP2 calculations. The high endo selectivity of hetero-Diels-Alder reactions of ortho-xylylenes with acetaldehydes is shown to result from attractive CH-pi interactions between alkyl groups of the aldehyde and the aromatic ring in the transition states of the reaction. For the hetero-Diels-Alder reactions of ortho-xylylenes with benzaldehyde, the stereoselectivity is shown to be mainly governed by the attractive pi-pi interactions between the phenyl rings of the benzaldehyde and the ortho-xylylene. MP2 calculations are necessary to reproduce the stabilizing dispersion interactions.

Aldehydes↗