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Biomedical subjects

K Hiromi

Publications and source records attributed to K Hiromi.

At least 73 records · Page 4Linked to original sources
PubMed1980

Static and kinetic studies on the binding between pepsin and Streptomyces pepsin inhibitor with a fluorescent probe.

The fluorescence of pepsin-bound 2-p-toluidinylnaphthalene-6-sulfonate (TNS) decreases upon the binding of Streptomyces pepsin inhibitor (SPI) with the enzyme. Equilibrium dialysis experiments showed this decrease to arise from the release of TNS from pepsin due to the binding of SPI in a molar ratio of 1 : 1. The results of stopped-flow kinetic study on the concentration dependence of the apparent rate constant for the binding reaction between pepsinand SPI using the fluorescence decrease of TNS as a probe were consistent with the interpretation that the binding reaction consists of at least two steps, including a fast bimolecular step followed by a slow unimolecular step. It was found that a fluorescence decrease occurred in both steps. The rate-pH profile suggested the participation of some ionizable group(s) (possibly a carboxyl group) in the binding.

Binding Sites↗
PubMed1980

Analysis of signal amplitude in stopped-flow method for enzyme-ligand systems.

Signal amplitudes of reaction curves obtainable by the stopped-flow method depend on the reaction mechanism as well as the optical properties of reactants, products and transient intermediates. Equation were derived for the concentration dependence of signal amplitudes expressed as absorbance changes for three typical reaction mechanisms which appear frequently in enzyme-ligand interactions. These relationships can be conveniently used to monitor experimentally observed signal amplitudes and characterize the optical properties of the transient intermediates. A useful method for accurately determining the dead-time of a stopped-flow apparatus is also described.

Enzymes↗
PubMed1980

Studies of the action pattern of an alpha-amylase from Streptomyces praecox NA-273.

An alpha-amylase [EC 3.2.1.1] from Streptomyces praecox was purified and its characteristic action, the conversion of maltotriose (G3) to maltose (G2) without appreciable formation of glucose (G1), was investigated. Isoelectric focusing or the glycogen adsorption procedure was employed after chromatography. Isoelectric focusing showed that the enzyme preparation after chromatographic separation comprises three isozymes. The preparation from the glycogen adsorption procedure showed the highest specific activity of any preparation of this enzyme ever obtained. Product analysis with uniformly labeled G3 revealed that at a high concentration (18 mM) of G3, much more G2 is produced than G1 (the product ratio G2/G1 is over 20), while at a lower concentration (10 microM) the reaction mixture was composed of nearly equimolar amounts of glucose and maltose. Based on the product analysis of reducing end-labeled G3 in addition to the above findings, the following conversion mechanism is proposed: Streptomyces alpha-amylase catalyzes transglycosylation to produce maltotetraose (G4) as a transient product which is immediately degraded into two molecules of G2 by a subsequent hydrolytic reaction, i.e., two molecules of G3 are converted into three molecules of maltose without appreciable formation of glucose.

Amylases↗
PubMed1979

Quantitative study on anomeric forms of glucose produced by alpha-glucosidases.

Anomeric forms of glucose produced from phenyl alpha-maltoside, maltose, or phenyl alpha-glucoside have been determined quantitatively by simultaneous measurements of optical rotation and reducing power, for eight kinds of glucose-producing 1,4-alpha-glucosyl hydrolases, including glucose-forming amylase from human urine, and alpha-glucosidases from pig serum, honey bee, buckwheat seed, rice seed, sugar beet seed, flint corn seed, and brewer's yeast. All the eight enzymes studied were found to produce alpha-glucose exclusively.

Animals↗
PubMed1979

The interaction of a tyrosyl residue and carboxyl groups in the specific interaction between Streptomyces subtilisin inhibitor and subtilisin BPN'. A chemical modification study.

An ultraviolet absorption difference spectrum that is typical of a change in ionization state (pKa 9.7 leads to greater than 11.5) of a tyrosyl residue has been observed on the binding between Streptomyces subtilisin inhibitor (SSI) and subtilisin BPN' [EC 3.4.21.14] at alkaline pH, ionic strength 0.1 M, at 25 degrees C (Inouye, K., Tonomura, B., and Hiromi, K., submitted). When the complex of SSI and subtilisin BPN' is formed at an ionic strength of 0.6 M and pH 9.70, the characteristic features of the protonation of a tyrosyl residue in the difference spectrum are diminished. These results suggest that the pKa-shift of a tyrosyl residue observed at alkaline pH and lower ionic strength results from an electrostatic interaction. Nitration of tyrosyl residues of SSI and of subtilisin BPN' was performed with tetranitromethane (TNM). By measurements of the difference spectra observed on the binding of the tyrosyl-residue-nitrated SSI and the native subtilisin BPN', and on the binding of the native SSI and the tyrosyl-residue-nitrated subtilisin BPN' and alkaline pH, the tyrosyl residue in question was shown to be one out of the five tyrosyl residues of pKa 9.7 of the enzyme. This tyrosyl residue was probably either Tyr 217 or Tyr 104 on the basis of the reactivities of tyrosyl residues of the enzyme with TNM and their locations on the enzyme molecule. Carboxyl groups of SSI were modified by covalently binding glycine methyl ester with the aid of water-soluble carbodiimide, in order to neutralize the negative charges on SSI. In the difference spectrum which was observed on the binding of subtilisin BPN' and the 5.3-carboxyl-group-modified SSI at alkaline pH, the characteristic features of the protonation of a tyrosyl residue were essentially lost, and the difference spectrum is rather similar to that observed on the binding of the native SSI and the enzyme at neutral pH. This phenomenon indicates that the pKa of a tyrosyl residue of the enzyme is shifted upwards by interaction with carboxyl group(s) of SSI on the formation of the enzyme-inhibitor complex.

Amino Acids↗
PubMed1978

Substituent effect on the elementary processes of the interaction between several benzeneboronic acids and substilisin BPN.

Benzeneboronic acid, a transition-state analog for serine proteases, binds to the catalytic center of subtilisin BPN'. The binding mechanism is so-called two-step mechanism; the initial fast association followed by a slow unimolecular process (Nakatani, H., Uehara, Y. and Hiromi, K. (1975) J. Biochem. (Tokyo) 77, 615--616), E + S fast equilibrium ES slow equilibrium ES (E = subtilisin, S = benzenebroonic acid). The structure of the transient complex (ES) at the initial association process was manifested by the substituent effect of benzeneboronic acid on the rate parameters in the elementary processes. The study by the temperature-junp and stopped-flow methods showed that the boron atom in benzeneboronic acid strongly interacts with a nucleophilic site, probably, O gamma of Ser-221 or imidazole of His-64 at the catalytic center, already at the initial fast association.

Binding Sites↗
PubMed1978

Binding of m-nitrobenzeneboronic acid to the active site of subtilisin BPN.

m-Nitrobenzeneboronic acid as a possible transition-state analog for serine proteases was found to cause absorption spectral change from 250 nm 350 nm upon binding with subtilisin BPN' (EC 3.4.21.14) at pH 6.5. Similar difference spectral changes of m-nitrobenzeneboronic acid were also observed at alkaline pH or upon addition of N-methylimidazole at pH 6.5. A characteristic circular dichroism spectrum of m-nitrobenezeneboronic acid was induced upon binding with subtilisin BPN' not only at pH 6.5, but also at alkaline pH. Circular dichroism spectral titration confirmed the stoichiometry of 1 : 1 for the m-nitrobenzeneboronic acid - subtilisin complex. m-Nitrobenzeneboronic acid was shown to be useful as a reversible chromophoric probe for the catalytic site of serine proteases.

Binding Sites↗
PubMed1978

Kinetic studies on redox reactions of hemoproteins. II. Reduction of thermoresistant cytochrome c-552 and horse heart cytochrome c by ascorbic acid.

The reductions of thermoresistant cytochrome c-552 and horse heart cytochrome c by ascorbic acid were studied by the stopped-flow method between pH 4 and 10. The results were as follows (1) The reduction of horse heart cytochrome c showed two relaxation decays above pH 8.5, one of which was pseudo-first order, as was the case below pH 8, while the other was nearly concentration-independent. These results were consistent with those reported by Greenwood and Palmer (J. Biol. Chem. (1965) 240, 3660-3663). (2) For the reduction of cytochrome c-552, only a single relaxational decay that obeyed pseudo-first order kinetics was observed. (3) It seems most reasonable to assume that the concentration-independent relaxation process can be attributed to the isomerization reaction accompanying ligand exchange, since it is known that only horse heart cytochrome c exhibits ligand exchange, involving a residue with pK 9.3.

Animals↗