Search PubMed⌕ Search

Biomedical subjects

Julius Rebek

Publications and source records attributed to Julius Rebek.

35 records · Page 2Linked to original sources
PubMed2002

Social isomers in encapsulation complexes.

We introduce here a new form of isomerism-social isomerism-that arises when two different guests are confined to a cylindrical host capsule. The isomerism deals with the orientationof one guest with respect to the other when they are in a container. Specifically, para-substituted toluenes coencapsulated with typical solvent molecules such as benzene, chloroform, and cyclohexane show two different isomeric arrangements that interconvert slowly on the NMR time scale. The dimensions of the capsule prevent the guests from squeezing past one another or tumbling freely.

Journal Article↗
PubMed2002

Metal-switching and self-inclusion of functional cavitands.

Cavitands bearing both eight (5) and two (13) metal-ligating carboxymethylphosphonate groups on their rims were synthesized by Arbuzov reaction of the corresponding bromoacetamido cavitands with trialkyl phosphites. These exist in the vase conformation in CDCl(3) and are stabilized by a cyclic seam of hydrogen bonds. This structure was also found in the solid state for the octabromoacetamide 4a and diphosphonate cavitand 13 by single-crystal X-ray analysis. Cavitands 5 and 13 form caviplexes in CDCl(3), CD(2)Cl(2), and alcohol solutions with adamantane derivatives 15a,b, quinuclidine 15d, ammonium and phosphonium salts 14, and drugs like ibuprofen 15c, all of which are stable on the NMR time scale at 295 K. NMR spectroscopy reveals that at 223 K octaphosphonate 5b exists in two forms: the major C(4)-symmetrical compound is filled with solvent while the minor species shows intramolecular inclusion of a dialkoxyphosphoryl group. In methanol-d(4) 5 and 13 exist in a lower symmetry vase conformation with self-inclusion of one alkyl group. Interaction of these complexes with La(OTf)(3) results in a change in the conformation of the cavitand from vase to kite with concomitant and quantitative release of the encapsulated guests. Two to three equivalents of the lanthanide salt per equivalent of cavitand 5a-d is necessary for the complete decomplexation of the included guest. The kite and the vase conformers equilibrate slowly on the NMR time scale at 295 K. The addition of good ligands for metal cations (nitrate or CMPO calixarene 16) shifts the equilibrium to the vase-shaped caviplex and allows quantitative control of the binding and release of the guest. The lanthanide complexes of octaphosphonates 5 in methanol-d(4) are velcraplex-like dimers held together by four metal cations.

Acetamides↗
PubMed2002

An NMR study of the rates of single-molecule exchange in a cylindrical host capsule.

Self-assembled cylindrical capsule 1 is reversibly formed from dimerization of two tetraimide resorcinarenes. Studies of guest exchange involving host capsule 1 reveal a mechanistic continuum for exchange that depends on the structure of the guest. Kinetic and dynamic NMR measurements demonstrate the direct displacement of one guest by another. Surprisingly, in the case of benzene exchange in the pairwise encapsulation of benzene and p-xylene, the incoming benzene occupies the same half of the capsule as the outgoing benzene. As the size of the guests increases, solvent-bridged intermediates determine the rates; empty volumes on the molecular scale need not be invoked.

Benzene↗
PubMed2002

Recognition and catalysis in allylic alkylations.

[structure: see text] A cavitand outfitted with a chelated palladium atom catalyzes allylic alkylation reactions. Molecular recognition by the cavitand distinguishes between closely related structures and results in subtle substrate specificities.

Alkylation↗
PubMed2002

Rigid tetranitroresorcinarenes.

[reaction: see text]. o-alkylation of C2V-symmetrical resorcinarene tetraesters 2 with 2 equiv of 1,3-difluoro-4,6-dinitrobenzene readily affords conformationally rigid octanitro resorcinarene 3, which is a potential scaffold for the design of supramolecular structures.

Alkylation↗
PubMed2002

Water-stabilized cavitands.

Tetrabenzimidazole cavitands 4 were prepared by condensation of ortho esters with octaamino cavitand 3 in 70-80% yield. Molecular modeling predicted that no intramolecular hydrogen bonds are possible between the imidazole fragments in the vase conformation of 4. Instead, this conformation provides four perfect binding sites for hydroxyl-containing molecules through an N-H---O-H---N pattern. Such interactions provide the means for sealing the cavitand's cavity. Accordingly, dry compounds 4 are not soluble in dry CDCl3 but readily dissolve upon addition of small amounts of alcohols or by saturation of the solution with water. 1H NMR spectroscopy revealed that in these solutions molecules 4 adopt a vase conformation while 1D GOESY experiments revealed their monomeric nature. In water-saturated CDCl3, these cavitands 4 form kinetically stable 1:1 inclusion complexes with tetramethylphosphonium bromide and triethylammonium chloride in which the cation is incorporated into the pi-basic cavity. Thus, cavitands 4 are a novel class of open-ended molecular containers capable of the formation of highly kinetically stable complexes upon assistance by hydrogen-bonding water molecules.

Benzimidazoles↗
PubMed2002

Molecules within molecules: recognition through self-assembly.

Synthetic molecular receptors that completely surround their target molecules can be created through the use of noncovalent interactions. These molecular capsules selectively sequester guest molecules from the influence of bulk solvent and other molecules on the basis of size, shape, and chemical complementarity. This reversible isolation spawns unique behavior within the confines of the host; the catalysis of chemical reactions and the stabilization of reactive species are possible outcomes that have been recently demonstrated. Compartmentalization of reagents can also have a dramatic effect on reactions that take place outside of the capsule, producing nonlinear kinetics in relatively simple reaction systems.

Catalysis↗
PubMed2002

Chemical amplification with encapsulated reagents.

Autocatalysis and chemical amplification are characteristic properties of living systems, and they give rise to behaviors such as increased sensitivity, responsiveness, and self-replication. Here we report a synthetic system in which a unique form of compartmentalization leads to nonlinear, autocatalytic behavior. The compartment is a reversibly formed capsule in which a reagent is sequestered. Reaction products displace the reagent from the capsule into solution and the reaction rate is accelerated. The resulting self-regulation is sensitive to the highly selective molecular recognition properties of the capsule.

Journal Article↗
PubMed2002

Selectivity in an encapsulated cycloaddition reaction.

A 1,3-dipolar cycloaddition takes place within a reversibly formed, self-assembled capsule. The reaction proceeds through an unsymmetrically loaded encapsulation complex with absolute regioselectivity.

Chemical Phenomena↗
PubMed2002

Amplification by compartmentalization.

Autocatalysis and chemical amplification are properties of living systems that can lead to increased responsiveness and to self-replication. Here we describe a synthetic system in which a unique form of reagent compartmentalization gives rise to nonlinear kinetics that are subject to the precise size- and shape-selectivity of the host. The reactivity is reminiscent of autocatalytic behaviour, in which there is no direct contact between reagents and products, and our approach offers a general way to impose complex chemical behaviour onto synthetic systems.

Journal Article↗
PubMed1996

Design and Asymmetric Synthesis of beta-Strand Peptidomimetics.

We describe the asymmetric synthesis of non-peptidic compounds that feature rigid backbone conformations and present various side-chain functions. The key step in the synthesis of these compounds is the C-acylation of an appropriate ketone with a suitably protected aspartic acid derivative. The resulting dipeptide modules may be connected to form tetrapeptide mimics. Specifically is described the mimicry of a four-residue segment of CD4, the cellular receptor of HIV-1. The design was based on molecular modeling and the X-ray crystal structures of CD4 and intended to present the most important side chains and backbone elements of the Phe43-Lys46 segment.

Journal Article↗