Biomedical subjects

Joseph R Roscioli

Publications and source records attributed to Joseph R Roscioli.

11 recordsLinked to original sources

PubMed2006

Infrared spectroscopy of water cluster anions, (H2O)n=3-24-)in the HOH bending region: persistence of the double H-bond acceptor (AA) water molecule in the excess electron binding site of the class I isomers.

We report vibrational predissociation spectra of water cluster anions, (H(2)O)(n=)()(3)(-)(24)(-) in the HOH bending region to explore whether the characteristic red-shifted feature associated with electron binding onto a double H-bond acceptor (AA) water molecule survives into the intermediate cluster size regime. The spectra of the "tagged" (H(2)O)(n)()(-).Ar clusters indeed exhibit the signature AA band, but assignment of this motif to a particular isomer is complicated by the fact that argon attachment produces significant population of three isomeric forms (as evidenced by their photoelectron spectra). We therefore also investigated the bare clusters since they can be prepared exclusively in the high binding (isomer class I) form. Because the energy required to dissociate a water molecule from the bare complexes is much larger than the transition energies in the bending region, the resulting (linear) action spectroscopy selectively explores the properties of clusters with most internal energy content. The (H(2)O)(15)(-) predissociation spectrum obtained under these conditions displays a more intense AA feature than was found in the spectra of the Ar tagged species. This observation implies that not only is the AA motif present in the class I isomer, but also that it persists when the clusters contain considerable internal energy.

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PubMed2006

Determination of the CO3- bond strength via the resonant two-photon photodissociation threshold: Electronic and vibrational spectroscopy of CO3-.Ar(n).

We use a two-laser pump-probe technique coupled with messenger atom tagging to determine the bond energy of O(-) to CO(2) in the CO(3) (-) ion, a prevalent species in the upper atmosphere. In this technique, the argon-tagged ion is first electronically excited using a visible laser, then irradiated with a tunable near-infrared beam across the CO(2)...O(-) dissociation threshold while O(-) products are monitored. This method yields a bond energy of 2.79+/-0.05 eV, which is about 0.5 eV higher than previously reported. Combining this with the well-known heats of formation of O(-) and CO(2), 105.6 and -393.1 kJmol, respectively [Thermodynamic Properties of Individual Substances, edited by L. V. Gurvich, I. V. Veyts, and C. B. Alcock (Hemisphere, New York, 1989), Vol. 1 and CODATA Thermodynamic Tables, edited by O. Garvin, V. B. Parker, and J. H. J. White (Hemisphere, New York, 1987)], yields the CO(3) (-) heat of formation: DeltaH(0) (0)=-556.7+/-4.8 kJmol. The one-photon (i.e., linear) infrared and electronic spectra of CO(3) (-) are also presented and compared to those obtained previously. The one-photon electronic spectrum is nearly identical to two-photon spectra, implying that argon does not significantly perturb the ion or its symmetry. The infrared spectrum is drastically different than that obtained in an argon matrix, however, indicating that the ion is likely distorted in the matrix environment.

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PubMed2006

Prying apart a water molecule with anionic H-bonding: a comparative spectroscopic study of the X-.H2O (X = OH, O, F, Cl, and Br) binary complexes in the 600-3800 cm(-1) region.

A detailed picture of the structural distortions suffered by a water molecule in direct contact with small inorganic anions (e.g., X = halide) is emerging from a series of recent vibrational spectroscopy studies of the gas-phase X-.H2O binary complexes. The extended spectral coverage (600-3800 cm(-1)) presently available with tabletop laser systems, when combined with versatile argon "messenger" techniques for acquiring action spectra of cold complexes, now provides a comprehensive survey of how the interaction evolves from an ion-solvent configuration into a three-center, two-electron covalent bond as the proton affinity of the anion increases. We focus on the behavior of H2O in the X-.H2O (X = Br, Cl, F, O, and OH) complexes, which all adopt asymmetric structures where one hydrogen atom is H-bonded to the ion while the other is free. The positions and intensities of the bands clearly reveal the mechanical consequences of both (zero-point) vibrationally averaged and infrared photoinduced excess charge delocalization mediated by intracluster proton transfer (X-.H2O --> HX.OH-). The fundamentals of the shared proton stretch become quite intense, for example, and exhibit extreme red-shifts as the intracluster proton-transfer process becomes available, first in the vibrationally excited states (F-.H2O) and then finally at the zero-point level (OH-.H2O). In the latter case, the loss of the water molecule's independent character is confirmed through the disappearance of the approximately 1600 cm(-1) HOH intramolecular bending transition and the dramatic (>3000 cm(-1)) red-shift of the shared proton stretch. An unexpected manifestation of vibrationally mediated charge transfer is also observed in the low frequency region, where the 2 <-- 0 overtones of the out-of-plane frustrated rotation of the water are remarkably intense in the Cl-.H2O and Br-.H2O spectra. This effect is traced to changes in the charge distribution along the X-.O axis as the shared proton is displaced perpendicular to it, reducing the charge transfer character of the H-bonding interaction and giving rise to a large quadratic contribution to the dipole moment component that is parallel to the bond axis. Thus, all of these systems are found to exhibit distinct spectral characteristics that can be directly traced to the crucial role of vibrationally mediated charge redistribution within the complex.

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PubMed2005

Vibrational predissociation spectroscopy of the (H2O)(6-21)- clusters in the OH stretching region: evolution of the excess electron-binding signature into the intermediate cluster size regime.

We report vibrational predissociation spectra of the (H2O)n- cluster ions in the OH stretching region to determine whether the spectral signature of the electron-binding motif identified in the smaller clusters [Hammer et al. Science 306, 675 (2004)] continues to be important in the intermediate size regime (n = 7-21). This signature consists of a redshifted doublet that dominates the OH stretching region, and has been traced primarily to the excitation of a single water molecule residing in a double H-bond acceptor (AA) binding site, oriented with both of its H atoms pointing toward the excess electron cloud. Strong absorption near the characteristic AA doublet is found to persist in the spectra of the larger clusters, but the pattern evolves into a broadened triplet around n = 11. A single free OH feature associated with dangling hydrogen atoms on the cluster surface is observed to emerge for n > or = 15, in sharp contrast to the multiplet pattern of unbonded OH stretches displayed by the H+(H2O)n clusters throughout the n = 2-29 range. We also explore the vibration-electronic coupling associated with normal-mode displacements of the AA molecule that most strongly interact with the excess electron. Specifically, electronic structure calculations on the hexamer anion indicate that displacement along the -OH2 symmetric stretching mode dramatically distorts the excess electron cloud, thus accounting for the anomalously large oscillator strength of the AA water stretching vibrations. We also discuss these vibronic interactions in the context of a possible relaxation mechanism for the excited electronic states involving the excess electron.

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PubMed2005

Identification of two distinct electron binding motifs in the anionic water clusters: a vibrational spectroscopic study of the (H2O)6- isomers.

Photoelectron spectroscopy of the water cluster anions, (H2O)n-, has revealed that several isomeric forms are present for most sizes, and here, we use vibrational spectroscopy to address the structure of the (H2O)6- isomer that more weakly binds the extra electron. To overcome the severe line broadening that occurs in the OH stretching region of this isomer caused by fast electron autodetachment, we concentrate on the low-energy bending modes of the perdeutero isotopomer. Sharp spectroscopic signatures are recovered for two isomers using argon predissociation spectroscopy, and the resulting bands are heavily overlapped. To extract their independent contributions to the observed spectra, we exploit the substantial dependence of their relative populations on the number of attached argon atoms in the (D2O)6-.Ar(m) clusters, determined by photoelectron spectroscopy. The vibrational spectra of each isomer can then be isolated by spectral subtraction, which is implemented with a covariance mapping approach. The resulting band patterns establish that the more weakly binding isomer does not display the characteristic electron-binding motif common to the more strongly bound isomer class. Whereas the strongly binding isomer features a single water molecule pointing toward the excess electron cloud with both of its hydrogen atoms, the spectrum of the more weakly binding isomer suggests a structure where the electron is bound by a number of dangling OH groups corresponding to water molecules in acceptor-donor binding sites.

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PubMed2005

The vibrational predissociation spectra of the H5O2 +RGn(RG = Ar,Ne) clusters: correlation of the solvent perturbations in the free OH and shared proton transitions of the Zundel ion.

Predissociation spectra of the H(5)O(2) (+)RG(n)(RG = Ar,Ne) cluster ions are reported in energy regions corresponding to both the OH stretching (3350-3850 cm(-1)) and shared proton (850-1950 cm(-1)) vibrations. The two free OH stretching bands displayed by the Ne complex are quite close to the band origins identified earlier in bare H(5)O(2) (+) [L. I. Yeh, M. Okumura, J. D. Myers, J. M. Price, and Y. T. Lee, J. Chem. Phys. 91, 7319 (1989)], indicating that the symmetrical H(5)O(2) (+) "Zundel" ion remains largely intact in H(5)O(2) (+)Ne. The low-energy spectrum of the Ne complex is simpler than that observed previously for H(5)O(2) (+)Ar, and is dominated by two sharp transitions at 928 and 1047 cm(-1), with a weaker feature at 1763 cm(-1). The H(5)O(2) (+)Ar(n),n = 1-5 spectra generally exhibit complex band structures reflecting solvent-induced symmetry breaking of the Zundel core ion. The extent of solvent perturbation is evaluated with electronic structure calculations, which predict that the rare gas atoms should attach to the spectator OH groups of H(5)O(2) (+) rather than to the shared proton. In the asymmetric complexes, the shared proton resides closer to the more heavily solvated water molecule, leading to redshifts in the rare gas atom-solvated OH stretches and to blueshifts in the shared proton vibrations. The experimental spectra are compared with recent full-dimensional vibrational calculations (diffusion Monte Carlo and multimode/vibrational configuration interaction) on H(5)O(2) (+). These results are consistent with assignment of the strong low-energy bands in the H(5)O(2) (+)Ne spectrum to the vibration of the shared proton mostly along the O-O axis, with the 1763 cm(-1) band traced primarily to the out-of-phase, intramolecular bending vibrations of the two water molecules.

Journal Article↗

PubMed2005

Fundamental excitations of the shared proton in the H3O2- and H5O2+ complexes.

We exploit recent advances in argon predissociation spectroscopy to record the spectroscopic signature of the shared proton oscillations in the H3O2- system and compare the resulting spectrum with that of the H5O2+ ion taken under similar conditions. Very intense 1 <-- 0 transitions are observed below 1100 cm(-1) in both cases and are surprisingly sharp, with the 697 cm(-1) transition in H3O2- being among the lowest in energy of any shared proton system measured to date. The assignments of the three fundamental transitions associated with the three-dimensional confinement of the shared proton in H3O2- are carried out with full-dimensional (DMC) calculations to treat this strongly anharmonic vibrational problem.

Letter↗

PubMed2005

Argon predissociation spectroscopy of the OH-.H2O and Cl-.H2O complexes in the 1000-1900 cm(-1) region: intramolecular bending transitions and the search for the shared-proton fundamental in the hydroxide monohydrate.

We present argon predissociation vibrational spectra of the OH(-).H(2)O and Cl(-).H(2)O complexes in the 1000-1900 cm(-1) energy range, far below the OH stretching region reported in previous studies. This extension allows us to explore the fundamental transitions of the intramolecular bending vibrations associated with the water molecule, as well as that of the shared proton inferred from previous assignments of overtones in the higher energy region. Although the water bending fundamental in the Cl(-).H(2)O spectrum is in very good agreement with expectations, the OH(-).H(2)O spectrum is quite different than anticipated, being dominated by a strong feature at 1090 cm(-1). New full-dimensionality calculations of the OH(-).H(2)O vibrational level structure using diffusion Monte Carlo and the VSCF/CI methods indicate this band arises from excitation of the shared proton.

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PubMed2004

How do small water clusters bind an excess electron?

The arrangement of water molecules around a hydrated electron has eluded explanation for more than 40 years. Here we report sharp vibrational bands for small gas-phase water cluster anions, (H2O)(4-6)- and (D2O)(4-6)-. Analysis of these bands reveals a detailed picture of the diffuse electron-binding site. The electron is closely associated with a single water molecule attached to the supporting network through a double H-bond acceptor motif. The local OH stretching bands of this molecule are dramatically distorted in the pentamer and smaller clusters because the excited vibrational levels are strongly coupled to the electron continuum. The vibration-to-electronic energy transfer rates, as revealed by line shape analysis, are mode-specific and remarkably fast, with the symmetric stretching mode surviving for less than 10 vibrational periods [50 fs in (H2O)4-].

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PubMed2004

Proton transfer dynamics via high resolution spectroscopy in the gas phase and instanton calculations.

Tunneling splittings have been observed in the eigenstate-resolved electronic spectrum of the 2-hydroxypyridine/2-pyridone dimer in the gas phase. Deuterium substitution experiments show that these splittings are caused by a concerted double proton transfer reaction along the O-H...O and N...H-N hydrogen bonds that hold the dimer together, substitution of the weaker and longer N...H-N bond having the larger effect. Tunneling splittings calculated by the instanton method for the zero-point level of the ground state are in good agreement with experiment for all observed isotopomers, showing that the dynamics occurs in this state, rather than in the electronically excited state.

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PubMed2003

Base pair analogs in the gas phase.

A rotationally resolved electronic spectrum of the gas-phase dimer 2-aminopyridine.2-pyridone, an analog of the adenine.thymine base pair, has been observed and assigned, leading to precise measurements of its moments of inertia and preliminary determinations of its structure. A Watson-Crick configuration results, with N...H-N and N-H...O hydrogen bond lengths of 2.898 and 2.810 A, respectively. The two bases are found not to be coplanar; a dihedral angle of 6.1 degrees between the base planes is also estimated from the measured moments of inertia. Possible chemical and biological implications of these results are discussed.

Aminopyridines↗