Biomedical subjects

Joel M Karty

Publications and source records attributed to Joel M Karty.

6 recordsLinked to original sources

PubMed2005

Enolate structure and electron affinity.

Photodetachment cross sections for a series of cyclic enolates were measured using a continuous wave (CW) ion cyclotron resonance instrument to generate and detect the ions. We report electron affinities for the radicals corresponding to the removal of the extra electron from the following anions: 2-methylcyclopent-1-enolate, 3-methylcyclopent-1-enolate, 4-methylcyclopent-1-enolate, 5-methylcyclopent-1-enolate, 2-methylcyclohex-1-enolate, 3-methylcyclohex-1-enolate, 4-methylcyclohex-1-enolate, 4-ethylcyclohex-1-enolate, 5-methylcyclohex-1-enolate, and 6-methylcyclohex-1-enolate. Some of these anions are mixed with their tautomers, derived from deprotonation of the parent ketone; the consequences of this are analyzed. The effect of alkylation on the electron affinities is discussed. The effect of vibrational modes on the lifetimes of the dipole-bound states of 4-methylcyclohex-1-enolate and 4-ethylcyclohex-1-enolate is discussed.

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PubMed2005

Molecular rotations and dipole-bound state lifetimes.

A computational model based on classical molecular rotation provides insight into the observability of dipole-bound states. The observability is related to the lifetime of the state prior to rotational autodetachment of the electron. The model tracks an ensemble of dipole-bound states. Their motion in space is integrated as a function of time, which provides a means to analyze the lifetimes of the dipole-bound states. The results are generally in good agreement with experimental data. Some exceptions show the limitations of the model but also provide insight into the autodetachment mechanism.

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PubMed2005

Y-aromaticity: why is the trimethylenemethane dication more stable than the butadienyl dication?

[reactions: see text] Resonance energies of the trimethylenemethane dication (1) and the butadienyl dication (4) were evaluated using two independent computational methodologies to provide insight into the validity of Y-aromaticity. One methodology employed density functional theory calculations and examined the resonance contribution of the C=C double bond toward the double hydride abstraction enthalpies of methylpropene (6) and 2-butene (8), yielding 1 and 4, respectively. These resonance contributions by the double bond were determined by calculating the double hydride abstraction enthalpies of both the parallel and perpendicular conformations of vinylogues of 6 and 8, in which n = 1-4 vinyl units were inserted between the central carbon-carbon double bond and each of the reaction centers. Extrapolation of the resonance contribution in each vinylogue to n = 0 yielded the resonance contribution in the respective parent molecules. The second methodology employed an orbital deletion procedure (ODP), which effectively allowed us to examine the energies of individual resonance structures. The resonance energy of each dication is computed as the difference between the most stable resonance structure and that of the delocalized species. The two methodologies are in agreement, suggesting that the resonance energy of the trimethylenemethane dication is substantially greater than that of the butadienyl dication. The origin of this difference in resonance stabilization is discussed.

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PubMed2004

Resonance energies of the allyl cation and allyl anion: contribution by resonance and inductive effects toward the acidity and hydride abstraction enthalpy of propene.

Density functional theory was employed to calculate the acidities and hydride abstraction enthalpies of propene (3) and propane (4), along with their vinylogues (5 and 6, respectively). The same reaction enthalpies were calculated for the propene vinylogues in which the terminal vinyl group was rotated perpendicular to the rest of the conjugated system (7). The contribution by resonance and inductive effects toward the acidity and hydride abstraction enthalpy of each vinylogue of 5 (n = 1-3) was computed and extrapolated to n = 0 (the parent propene system). The resonance energies of the allyl cation and anion were determined to be about 20-22 and 17-18 kcal/mol, respectively. Comparisons are made to resonance energies calculated using other methodologies.

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PubMed2003

Origin of the acidity enhancement of formic acid over methanol: resonance versus inductive effects.

Density functional theory calculations were employed to study the relative contribution of resonance versus inductive effects toward the 37 kcal/mol enhanced gas-phase acidity (DeltaH degrees (acid)) of formic acid (1) over methanol (2). The gas-phase acidities of formic acid, methanol, vinyl alcohol (5), and their vinylogues (6, 8, and 9) were calculated at the B3LYP/6-31+G level of theory. Additionally, acidities were calculated for the formic acid and vinyl alcohol vinylogues in which the formyl group and the vinyl group, respectively, were perpendicular to the rest of the conjugated system. Comparisons among these calculated acidities suggest that inductive effects are the predominant effects responsible for the enhanced acidity of formic acid over methanol, accounting for between roughly 62% and 65% of the total enhanced acidity; the remaining 38% to 35% of the acidity enhancement appears to be due to resonance effects. Further comparisons suggest that resonance effects are between roughly 58% and 65% of the 26 kcal/mol calculated acidity enhancement of vinyl alcohol over methanol, and the remaining 42% to 35% are due to inductive effects.

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PubMed2002

Conformation-dependent reaction thermochemistry: study of lactones and lactone enolates in the gas phase.

Gas-phase acidities (Delta H degrees (acid)) of lactones with ring sizes from four to seven have been measured on a Fourier transform ion cyclotron resonance mass spectrometer. Electron affinities (EAs) of the corresponding lactone enolate radicals were measured on a continuous-wave ion cyclotron resonance mass spectrometer, and the bond dissociation energies (BDEs) of the alpha C-H bonds were derived. In order of increasing ring size, Delta H degrees (acid) = 368.7 +/- 2., 369.4 +/- 2.2, 367.3 +/- 2.2, and 368.3 +/- 2.2 kcal/mol and BDE = 99.4 +/- 2.3, 94.8 +/- 2.3, 89.2 +/- 2.3, and 92.8 +/- 2.4 kcal/mol for beta-propiolactone, gamma-butyrolactone, delta-valerolactone, and epsilon-caprolactone, respectively. For their corresponding enolate radicals, EA = 44.1 +/- 0.3, 38.8 +/- 0.3, 35.3 +/- 0.3, and 37.9 +/- 0.6 kcal/mol. All of these lactones are considerably more acidic than methyl acetate, consistent with a dipole repulsion model. Both BDEs and EAs show a strong dependence on ring size, whereas Delta H degrees (acid) does not. These findings are discussed, taking into account differential electronic effects and differential strain between the reactant and product species in each reaction.

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