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Biomedical subjects

Jiyu Zhang

Publications and source records attributed to Jiyu Zhang.

3 recordsLinked to original sources

Rab10 coordinates SADS-CoV non-lytic egress through the ERGIC-TGN-lysosome trafficking pathway.

Swine acute diarrhea syndrome coronavirus (SADS-CoV) is a bat-originated alphacoronavirus that causes devastating enteric disease in neonatal piglets and possesses significant potential for cross-species transmission. While the early stages of the coronavirus life cycle have been extensively characterized, the host factors indispensable for virion assembly and subsequent export remain largely enigmatic. Here, by performing a genome-wide CRISPR-Cas9 knockout screen using a recombinant icSADS-CoV-GFP reporter virus, we identified the small GTPase Rab10 as a critical host dependency factor for SADS-CoV infection. Viral life cycle analysis revealed that Rab10 is not required for viral attachment, entry, or initial genome replication, but is essential for the virion transport and non-lytic egress. Rab10 deficiency markedly reduced the extracellular release of viral RNA, viral proteins, and infectious progeny, as well as the secretion of SADS-CoV virus-like particles. Confocal imaging showed that Rab10 and viral protein-positive intracellular structures were associated with LMAN1, TGN46, and LAMP1 positive compartments. These findings support a model in which Rab10 coordinates a virus-containing vesicles trafficking pathway associated with ERGIC-TGN-lysosome compartments. Mechanistically, Rab10 facilitates the loading of the viral envelope (E) protein into transport vesicles derived from the ERGIC. Rab10 associates with the SADS-CoV E protein, and mapping analyses implicated the C-terminal PDZ-binding motif, particularly residue V75, in efficient Rab10 association and viral release. Collectively, our findings identify Rab10 as a host regulator of SADS-CoV non-lytic egress and highlight the E-Rab10 interaction and the vesicular trafficking machinery as a potential target for developing antiviral strategies.

Animals

A novel domain of unknown function 707 protein coordinates root growth and drought tolerance.

A well-developed root system is one of the morphological mechanisms through which xerophytes adapt to drought. However, the molecular mechanisms underlying root growth are not completely known. In this work, two domain of unknown function 707 (DUF707) proteins were identified as hub genes for the response of roots to drought stress in Lespedeza potaninii, a xerophytic subshrub. We found that angiosperm DUF707 proteins can be divided into two subfamilies. LpDUF707-1 expression was strongly induced under drought stress and abscisic acid (ABA) treatment in the roots of L. potaninii, and its promoter activity in the roots was significantly induced by drought stress and mannitol treatments. The overexpression of LpDUF707-1 significantly improved root growth and drought tolerance, whereas the silencing of LpDUF707-1 inhibited root growth and reduced drought tolerance. We further revealed that the LpOBP3.1 transcription factor directly binds to the promoter region of LpDUF707-1, thereby repressing its activity. LpOBP3.1 expression was strongly suppressed under drought stress and ABA treatment in the roots of L. potaninii. The overexpression of LpOBP3.1 significantly inhibited root growth and decreased drought tolerance, whereas LpOBP3.1-RNAi lines presented the opposite pattern. Collectively, our results demonstrated that this novel module regulates root growth and drought tolerance in L. potaninii, thus providing gene targets for the development of elite crop varieties with well-developed root-mediated drought tolerance.

Drought Resistance

The genome of Lespedeza potaninii reveals biased subgenome evolution and drought adaptation.

Lespedeza potaninii, a xerophytic subshrub belonging to the legume family, is native to the Tengger Desert and is highly adapted to drought. It has important ecological value due to its drought adaptability, but the underlying molecular mechanisms remain largely unknown. Here, we report a 1.24 Gb chromosome-scale assembly of the L. potaninii genome (contig N50 = 15.75 Mb). Our results indicate that L. potaninii underwent an allopolyploid event with 2 subgenomes, A and B, presenting asymmetric evolution and B subgenome dominance. We estimate that the 2 diploid progenitors of L. potaninii diverged around 3.6 million years ago (MYA) and merged around 1.0 MYA. We revealed that the expansion of hub genes associated with drought responses, such as the binding partner 1 of accelerated cell death 11 (ACD11) (BPA1), facilitated environmental adaptations of L. potaninii to desert habitats. We found a novel function of the BPA1 family in abiotic stress tolerance in addition to the known role in regulating the plant immune response, which could improve drought tolerance by positively regulating reactive oxygen species homeostasis in plants. We revealed that bZIP transcription factors could bind to the BPA1 promoter and activate its transcription. Our work fills the genomic data gap in the Lespedeza genus and the tribe Desmodieae, which should provide theoretical support both in the study of drought tolerance and in the molecular breeding of legume crops.

Genome, Plant