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Biomedical subjects

Jinlong Yang

Publications and source records attributed to Jinlong Yang.

At least 37 records · Page 2Linked to original sources

A first-principles study of (R)- and (S)-PPA Molecules on Cu(111).

The adsorption of (R)- and (S)-2-phenylpropionamide (PPA, C(9)H(11)ON) molecules on a Cu(111) surface has been investigated using the density functional method with supercell models. The adsorption orientations of both (R)- and (S)-PPA molecules on the surface are the same: the phenyl rings are approximately parallel to the Cu(111) surface and positioned in the hollow sites, the amino and methyl groups occupy two-bridge sites, and the carbonyl occupies the top site. After the adsorption, the bond lengths in the two enantiomers are almost unchanged, but the changes for two dihedral angles show differences, especially for (R)-PPA molecule. The first angles between the (N,C9,C7) plane and the (C9,C7,C6) plane are 19.4 and 0.7 degrees for (R)- and (S)-PPA molecules, respectively, and the second angles between the (C8,C7,C6) plane and the (C7,C6,C5) plane are 74.8 and 0.4 degrees for (R)- and (S)-PPA molecules, respectively. The adsorption energies of (R)- and (S)-PPA molecules are calculated to be -34 and -26 kJ mol(-1), respectively. The simulated scanning tunneling microscopy (STM) images of (R)- and (S)-PPA molecules on the Cu(111) surface display different features and are coincident with the experimental ones. The interaction between the adsorption molecule and the metal surface is found to be responsible for the discrimination of (R)- and (S)-PPA molecules on the surface.

Amides↗

Survival, growth, settlement and metamorphosis of refrigerated larvae of the mussel Mytilus galloprovincialis Lamarck and their use in settlement and antifouling bioassays.

Straight-hinge veliger and pediveliger larvae of the mussel Mytilus galloprovincialis were refrigerated for varying periods for use in bioassays. Straight-hinge veliger larvae grew to the umbo-veliger stage after 2 months in the refrigerator, but no pediveligers were observed during the 3-month refrigeration period. The average survival rate of larvae in the refrigerator was 79% after 1 month, but gradually decreased with the refrigeration period, and was as low as 22% after 3 months. All refrigerated larvae grew to the pediveliger stage in the incubator at 17 degrees C at the same rate as that of the control larvae that were not refrigerated. Settlement and metamorphosis of pediveligers from both refrigerated and control groups were facilitated by microbial film and epinephrine and inhibited by phentolamine. Thus, refrigeration can be used as an effective method of storing larvae of M. galloprovincialis for use in assays to assess candidate settlement inducers and antifouling substances.

Analysis of Variance↗

Hydrogen adsorption on zigzag (8,0) boron nitride nanotubes.

The chemical adsorption of H atoms on an (8,0) zigzag boron nitride nanotube is studied using the density functional theory with the supercell method. One to four H atoms per 32 B and 32 N are considered. The results show that H atoms prefer to adsorb on the top sites of adjacent B and N atoms to form an armchair chain along the tube axis. An even-odd oscillation behavior of the adsorption energy of H atoms on the tube is found, and the average adsorption energy of even H atoms is obviously bigger than that of odd H atoms. The results can be understood with the frontier orbital theory. Based on this adsorption behavior, several high-symmetric structures of H adsorbed boron nitride nanotubes with 50% and 100% coverages are studied. The pairs of lines' pattern with 50% coverage has the biggest average adsorption energy per H(2) among the chosen configurations, corresponding to approximately 4 wt % hydrogen storage.

Journal Article↗

A first-principles potential energy surface and vibrational states for hydrogen on Cu(100).

Density-functional theory calculations based on plane-wave expansion and pseudopotential treatment were carried out for atomic hydrogen on a rigid Cu(100) surface. A global potential energy surface was then obtained by using a three-dimensional spline interpolation. It is found that the minimum of the potential is located at the fourfold hollow site with a diffusion barrier of 88 meV at the bridge site. The vibrational states of atomic hydrogen and deuterium on the Cu(100) surface were calculated on the potential surface. Our calculations show that the vibrational states A(1) (0), A(1) (1), E(1), and B(2) (1) of H/Cu(100) exhibit strong localized character and very narrow band widths, whereas other excited vibrational states have considerable delocalized character and broad band widths. The vibrational frequency of 71.2 (51.5) meV for H(D) in the perpendicular direction obtained in this study is in good agreement with the experimentally observed value of 70 (52) meV.

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Theoretical study of nitric oxide adsorption on Au clusters.

The adsorption properties of NO molecule on anionic, cationic, and neutral Au(n) clusters (n=1-6) are studied using the density functional theory with the generalized gradient approximation, and with the hybrid functional. For anionic and cationic clusters, the charge transfer between the Au clusters and NO molecule and the corresponding weakening and elongation of the N-O bond are essential factors of the adsorption. The neutral Au clusters have also remarkable adsorption ability to NO molecule. The adsorption energies of NO on the cationic clusters are generally greater than those on the neutral and anionic clusters.

Journal Article↗

Adsorption energies of molecular oxygen on Au clusters.

The adsorption properties of O(2) molecules on anionic, cationic, and neutral Au(n) clusters (n=1-6) are studied using the density functional theory (DFT) with the generalized gradient approximation (GGA), and with the hybrid functional. The results show that the GGA calculations with the PW91 functional systemically overestimate the adsorption energy by 0.2-0.4 eV than the DFT ones with the hybrid functional, resulting in the failure of GGA with the PW91 functional for predicting the adsorption behavior of molecular oxygen on Au clusters. Our DFT calculations with the hybrid functional give the same adsorption behavior of molecular oxygen on Au cluster anions and cations as the experimental measurements. For the neutral Au clusters, the hybrid DFT predicts that only Au(3) and Au(5) clusters can adsorb one O(2) molecule.

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A first-principles study on quasi-1D alkali metal chains within zeolite channels.

We report first-principles studies on systems formed by alkali metal (Na, K, or Rb) added to zeolite ITQ-4. Geometric and electronic structures of the quasi-1D chains of intercalated alkali metal atoms at experimental loading (4 metal atoms per 32 Si) are studied. Clear differences between different kinds of alkali metal are found, with a general trend of decreased ionization and less metallic character for the lighter alkali metals. Within the zeolite channels, it is possible to form insulated and metallic alkali metal chains by doping Na or Rb. Agreeing with experiments, only Rb here is found to be a good candidate to generate inorganic electride. We also predict that a large quantity of Na can be doped into the zeolite channel, while no more than 4 Rb per 16 Si can be doped.

Journal Article↗

Electronic transport in Z-junction carbon nanotubes.

In this paper, the electronic transport in different Z-shape carbon nanotubes containing double knee junction structures on the same tube is studied. One consists of (5,5)-(9,0)-(5,5) double knee nano-metal-metal-metal junctions and another consists (6,6)-(10,0)-(6,6) double knee nano-metal-semiconductor-metal junctions. With the nearest-neighbor pi-orbital tight-binding model, quantum conductances of these double knee junctions are calculated using the Landauer formula. The interesting conductance curves are provided to exhibit a potential application in the arena of molecular electronics.

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Inorganic electrides.

Inorganic electrides are a novel kind of ionic compounds in which the anions are electrons confined in a complex array of cavities or channels and the cations are nanoscale arrays of alkali metal ions that provide charge balance. In electrides the donated electron behaves like a low-density correlated electron gas, whereby the dimensionality of the electron gas and its electronic and magnetic properties are determined by the topology of the cavities in the host matrix. Unlike traditional electrides, in which alkali cations are encapsulated within an organic cage, inorganic electrides are thermally stable. The current inorganic electrides based on alkali metal loaded zeolites can be designed as useful reduced-dimensionality materials. Inorganic electrides are powerful reducing agents, and they are able to reduce small aromatic molecules to the radical anions within the channels of the zeolite.

Journal Article↗

Direct visualization of straw cell walls by AFM.

The structural relationship of cellulose, hemicellulose, and lignin in plant cell walls is still a mystery needing to be explored. By using atomic force microscopy (AFM) the surface of straw at different layers was directly observed, and the structural characteristics were analyzed by topographic analysis and FT-IR spectra. It was found that a compact layer of wax covered the outside of the straw, which protects the straw from insects and microorganisms. At the boundary of the primary and second wall there appears a network structure of cellulose and hemicellulose, with some lignin localised on the surface of the network. It is consistent with the model of a cell wall suggested by Vincent. Inside the second cell wall, there is a layer mainly composed of a cellulose crystalline region. High-resolution AFM observation reveals that the crystalline structure consists of both triclinic and monoclinic unit cells. An AFM phase image showing the structural relation between cellulose microfibrils, hemicellulose, and lignin in the straw cell wall.

Cell Wall↗

A theoretical study of small copper oxide clusters: Cu2Ox (x = 1 - 4).

Density functional theory (DFT) calculations are performed to study Cu2Ox (x = 1 - 4) clusters in their neutral, anionic and cationic states. The ground state structures are obtained and found to exhibit linear or near linear structures, which are different from the two- or three-dimensional ones suggested by the previous theoretical calculations. The calculated electron affinities of the clusters are in good agreement with the experimental ones. The low-lying excited states for the clusters are calculated using time-dependent DFT and used to assign the features in the photoelectron spectra. Our results compare well with the available experimental data.

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High-resolution scanning tunneling microscopy for molecules.

Scanning tunneling microscopy (STM) can detect individual molecular configuration with its high spatial resolution ability, but some intrinsical and extrinsic factors result in the complexities of STM imaging of single molecules. By combining STM experimental work and theoretical simulation with the local density approximation based on Bardeen perturbation method, we have explored the atomic-scale configuration of the following molecular systems: C(60) molecules adsorbed on Si(111)-(7x7); alkanethiol self-assembly monolayers on Au(111); C(60) molecule imaged by STM tip adsorbed with another C(60) molecule; O(2) molecule adsorbed on Ag(110) and CO molecule adsorbed on Cu(111) imaged by CO chemically modified STM tip. Some related problems including: molecule-substrate interactions, STM imaging mechanism, chemically modified STM tip, etc., are discussed.

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Unveiling metal-cage hybrid states in a single endohedral metallofullerene.

The local structural and electronic properties of individual metallofullerenes are studied using scanning tunneling microscopy, scanning tunneling spectroscopy, and theoretical simulations. The energy-resolved metal-cage hybrid states of a single endohedral metallofullerene Dy@C82 isomer I have been spatially mapped, supporting a complex picture consisting of the orbital hybridization and charge transfer for the interaction between the cage and the metal atom. The relative position of the encapsulated Dy atom inside the cage and the molecular orientation on the surface have been inferred by comparing the experimental results with theoretical simulations. The combined technique provides promising applications in the fields of in situ characterization and diagnostics of metallofullerene-based nanodevices.

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Disorder and suppression of quantum confinement effects in Pd nanoparticles.

Size-selectable ligand-passivated crystalline and amorphous Pd nanoparticles (<4 nm) are synthesized by a novel two-phase process and verified by high-resolution transmission electron microscopy. Scanning tunneling spectroscopy preformed at 5 K on these two types of nanoparticles exhibits clear Coulomb blockade and Coulomb staircases. Size dependent multipeak spectral features in the differential conductance curve are observed for the crystalline Pd particles but not for the amorphous particles. Theoretical analysis shows that these spectral features are related to the quantized electronic states in the crystalline Pd particle. The suppression of the quantum confinement effect in the amorphous particle arises from the reduction of the degeneracy of the eigenstates and the level broadening due to the reduced lifetime of the electronic states.

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Inorganic electride: theoretical study on structural and electronic properties.

We report self-consistent ab initio calculations of structural and electronic properties for a kind of recently synthesized inorganic electride. The optimized geometry gives zigzag cesium chains within the sinusoidal channels of the zeolite. Among the wide energy gap of the zeolite, near the conduction bands, there are two interstitial electride bands mainly contributed by 6s electrons of Cs atoms, which have a delocalized real space distribution along the channels. For all different doping rates studied, we find that a finite density of states appears at the Fermi level, which predicts a metallic behavior of this material. Detailed electronic structure reveals all the essential properties of the electride model. The shift of Fermi level and the delocalization of the highest occupied bands cause this material to be a powerful reducing agent.

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Low-temperature orientationally ordered structures of two-dimensional C60.

Orientationally ordered structures of two-dimensional (2D) C(60) at low temperature have been investigated theoretically and experimentally. Using total energy optimization with a phenomenological potential, we find the ground state is a close packed hexagonal lattice in which all the molecules have the same orientation. Several local minima of the potential energy surface are found to be associated with other 1 x 1 lattices as well as 2 x 2 lattices. The energies of the orientational domain boundaries of the 1x1 lattices are also computed, and two kinds of which yield negative values. A majority of these theoretical findings are confirmed by our low-temperature scanning tunneling microscopy study of a 2D C(60) array supported on a self-assembled monolayer.

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